LOC110502071 (LOC106582043)


Basic Information

Item Value
gene id LOC110502071
gene name LOC106582043
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24053262 ~ 24072305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959586.1
ggtattgaccgaactgaggctggctggtgtccgagttaactgtgaagaccgctagcagtggctaactgactaatGGGCCTAGCTCAAAAGCAAACAGAtagtaacagatccataccatgttgggtgaggcgggttgcaggagagtatattcagtccgtagatggaaagtgggattaaaatataTACCAAATATATACGGGAGGAAAACTATTATttacacgggacaagacaaaacacacgtccgactgctacgccatcttgggaaAAAATGAGCATGTGTAGGGCTGTGacttcaatcaaatcaaatgtatttataaagcccttcttacatgtcataaagtgctgtacagaaacccagcctgaaaccccaaacagcaagcaatgcaggtgtagaagcacagtggctaggacaAACTAGCCAAAGACTTGAATGGAATATGACTGAAGGAGTGGGATATTTATTTTTCATGTGTCTCTTTTTTAAATTTTGTATATCGTTTTTTCCCCTTTCCAACTATCGATATTTGTTCCATAGTTTACCAtccgtacagtaggtggcggcatgcatcTCTAACGATTATTTGCGGACCGCcataataccatagaagaagaaggTTATTTCGGTCGAGGAACGTCACCTGCGTCTGTCTGTAAGGTGTTCCGAAGCCAGGGAAGGGATGACCGGCGAGACGGAGGCTGATATACCTGAAACGGGAGCAGTCTTCACCTTTGGGAAGAGCAAGTTTGCTGATAATATGCCCAGTAAATTCTGGCTGAAGAATGACCATCCAGAGGAAATCTCATGTGGGGGGGATCACACTGCTGTCATAACAGGCCATGGCAGGCTGTTCATGTTTGGAAGTAATACCTGGGGTCAGCTAGGACTTGGGTCAGAGATCAATGTCAACATCAACAAGCCCACCGCTGTGAAAGCGTTGAAGTCTGAAAAAGTTAAGTTTGCATCATGTGGGAGAGACCACACAATAGTGTGCACATGGAGTGGGCGTGTTTATGGTGCTGGCAGTAACCAGGAGGGGCAGCTTGGTTTGGGACACTGTGACGACACAAACACCTTCCACCTGCTTCATCCTTTCTCCGACCATGCACCCATCAAAATGCTTGCTGCTGGCTGCAACACCTCAGCTGCCCTAACAGAGGACGGCAGGCTGTTCATGTGGGGTGATAACTCTGTGGGCCAGATCGGTCTGGGCACAGAGAGCTACACCTCAGAGCCCAGAGATGTGATGGTGGGACAGCCAGTGGCCTGGGTGTCTTGTGGATACCACCACTCAGCGTTTGTCACAGTGGATGGGGACCTCTACACGTTTGGGGAGAGTGGGAGCGGAAGACTGGGGGTATTCCCAGACCAGCTAGCCAATCACAGAGTCCCTCAACGTGTGGAAAGCATCCAGGACCCGGTCATCCAAGTGTCCTGTGGAGGGGAGCACACAGTGGCACTCACAAAGGACAATGTGTACGCATTTGGGCGGGGGCAGCATGGGCAGCTAGGCCATGGGACCTTCCTGTTCGAGGTACCTTTGCCAAAAGCACTGGACCACTTCCGGAATGGCAGAGTCAGTCACGTAACCTGTGGAGAGAACCACACTGCAGTGATCACAGACAGTGGGATTCTATACACCTTTGGGGACGGTCGCCAGGGTAAACTAGGACTGGGGGAAGAGAACTTCACCAACCAGTTCAGACCAACACTGTGCCCACGCTTCCTCAAATACAGTGTCCAGTCAgTGGCATGTGGCGGCTCTCACATGCTGGTGCTGGCTATGCCCAGACTCCCAGAGGTTGAGGAAGTGGTGATAGAGGAGGATGATGTTACAGAGAGCATTCTGGAGTCTCTGGAGACCTACACCGAGCTGCTCCTGATGGACCCCTCCTTCCTGATGCCCAACTCACAAACCACACCTCCTCTCTGGACCCTGTCTGCTAGGGCCCGCCGCAGGGAGAGGGAGAGTTCTCCAGAGCAGTTTGGCCAGATGTTCCGTAACCTTCCGCCTCTGATGTCAGGCTTCCTCAACACCTCCCTGCCCCTGTCCAGAAATATCCGCATCTCCAGAACACCATCTGAAGACCTCTGCACCTCCTCACTGTCCTCCAATCCCTCCTCAAACGACCCCCCCAGCCCCTCACTCTCCCTTAAATCCAGATCCAAAACCCCATTAACACCGTCACCCAAGTTCATATTCCCAGACCCTCCTAGCCCTTCACTCTCCTCCAAGTTCTCCCCTAAGAAGAGGCTCAGCCCATCAAAATCCCCCAAATATGCATCTAAAGAACACCTCACCCCCCCACAGTCCTTTAAATCCACACATAAACTCATCCCCACCTCCTCAGTGTCCCCTAAACCCTCCTCTGTAAAGCCCACAGATGACAAACAATCCTCCAAAATGCTGTCTGAGGGTCCCACCACACCACAGACAGAGAGGACCAAGGACACTGTGATAGAAGCAACTGACAACCGGATGCTCATTGAGAATTTGGAGAAGAACATGGATGAAGAGGACAATAAAGACATGTTGCCAGACCTGGCATTACCATCAGGAGGAGATTTTGGCGATGAGACTGGGACTACATCTGCAGAACAGAAGGATAAGGAACATAAAAAGGGTCGGGCTCTGAGGAGAGCTGTTAAGGAGGCAGAAATGGAGGTTGAACAAGCCCGGGCCAACAGGAAGCCGCAGCTACTTTCTCATAAGGCCCTTCCCACCGAGCTTCTGAGAGGCTCCAGCTTGAGTTCATTAAAGGCAGAGGGCACGCCCCCAAAGAGCCCCAAATGCTTAATGAACCCTCAGACCCCAGCCAGCGGCAAGGAAAACATTGTCTTGACAGGAGAAAATTCTGGCATCAAAGTGAACACCAGTAAACTGACAGGTAGTAATCTGCAAAGCACAGGTAAAGCAGGGTCTAAACCAATTTCACCAGCAAAGAAACAAAGCAAGTTATCCGTATCGAAACCTAGCACTCCTACACACAGCCAGATCCAGATATCTGTGTCTAAACCCAGCGCTCCAAAACATGGTCAAAACAAACTGTCTGAATCTAAACCCAGCACTCCAAAACATGGTCAAAACAAACCTTCTGAATCTAAACCCAGCACTCCAAAACATGGTCAAAACAAACTGTCTGAATCTAAACCCAGCACTCCAAAACATGGTCAAAACAAACTGTCTGAATCTAAACCCAGCACTCCAAAACATGGTCAAAACAAACTGTCTGAATCTAAACCCAGCACTCCAAAACATGGTCAAAACAAACTGTCTGAATCTAAACCCAGCACTCCAAAACATGGTCAAAACAAACTGTCTGAATCTAAACCCAGCACTCCAAAACATGATCAAAACAAGCTGTCTGAGATGAATAAAGGTACAGAGATGAAAGGTAAAGGCCCTGTAAAAGTTCAAGGTAAAGAGGCTTTCAAAGACAAGAAATCTAAAATTACAGCAGAAGATACTAAAACAATTGAAGTTCAAAATAAACCACTTCAAGAGATCGTGTCCCCTCCAGTCAAAGTTAAAGGTAAACCTGTGGAAAAGGAAACAACTCCAATTAACGCTACTGCTGAAACCATTCCTTTGAAAGTAAAGAGCATTCCCAAGAAGATTGTAGATGATAACAAACCATCTGAATGTAAAGGCACTCCAATAAAAGCAAAAAAGAAGGCAAAAGAGGTGAATGAAGAGAAGATGGAAGAGTCTATTACTTTCAACGAGTCAGGGACAACAGTGGGGAACAAAATGGCAGTTAAAGATAAAGGCAAAGAAAAAGAAAGTGCACCCACCAAAACAAAAAATGTGCCCAAACCAAAAGATGTTGAAGCGAAACTAACTGAGTTAGAGGGAGCCCCAGTGAAACTGAAAAGCAAGCCAACAGAGGTTTCCAGCCAAGCAGTCTTAGTAGAACCTACCTCAAAGGCCAAATCACCAGTCACATCACTCTCATTATCAGATGCACTACCTCAAAATGCTGGAGATAAGAAGTCAACAAAGTCACTTGTTGTCTGTCAGGTCAGGGATAGAGTGGAGGTCCCAGGGGAAGATGCCTTTGATGAATCCCAGGAGGGGAAGCCTAGCTGGGGAGGATTTCTCAGCGATGCAGCCTCTCTCCTTCCAGATGTGGGGATGGCGGGGACAGCCATGGGGGTCCTGAGTGAGGCGGTGACCAGCGTGAGGGGGATTCAGTCGGAGAGTGACACAGACACTTCTATCCCTCCTCGGCGGTCCAGCCGGGTAGAGAGGTTCACCAAACAGAGCGCCATCACCCAGCCTTCCTCCACATCACCCTCTTCTTCAACATCAGATCCAAGCACAGCTGAGCAAAGCAAGAGGACTGACACCCGCATCGGCACCCTCAGGAATTCTGATCGGGAAGTGGGGAGCAGGATTTTTGAGAAGGACCCAGAAACCACAGAGGCTGCTAGCGAGAGGTCAGGAGGTCAGGCCAAGGTCGATTATGATGAGAACTCTAGTAGTCAAAGTTCGGGAGCTGAGGATGATGAAGATAAAGAGTCCACAAAGAGACATGGAGATGGGACAGAAATGGAGAGCACCAAACAAGAGGAAAAAGAGGATTACAGAAGTGTTAAGGGTCTGGAAGATAACAGTGAAGACAGTGATACTGTGGCcagcggagagggagaggagggtagagaagaAAAGAGTGAAGACAGCGAGGGCGCGGAAGAAGAAAAGAGTGAAGAGAGCGAGGGCGCAGAGGCAGAAGAAAAGAGTGAAGACAGCGAGGGCGCGGAAGAAGAAAAGAGTGAAGACAGCGAGGGCGCAGAGGCAGAAGAAAAGAATGAAGACAGCGAGGGCGCGGAAGAAGAAAAGAGTGAAGAGAGTGAGGGCGCGGAAGAAGAAAAGAATGAAGAGAGCGAGGGCGCGGAAGAAGAAAAGAGTGAAGAGGATGCGGAGGCGGAAGAAGAAGAAACGAGTGATAGTGTGGGGacaggagggggggaggaggaagacgagAGGTGTGAGAGTgaggggacaggagggggggaggaggaagacgagAGGTGTGAGAGTGAGGGGACAGGAGAGTgggaacagggagagaagagTGATAGTGATGTGACTAtaaagggggaggaggaagaagagaaaatTGATGAGGGCACAGtacagggggaggagaaagaagagaagagtGATAGTGAGGGGACAAGTGATGGGGAGGAGAGCAAAGAGAGTGATTCTGAGGCAAgcctagaggaggagggagacgagACGAGTGCACagagtgagggggaaggagaagagggCGAAAGTGGTTCTGGGacaagtagagaggaggagatgagtgaAGAAGAGTCCAGTGATGAAGAGAGTggggataaagaggaagaggaggagagcaaTTCGAGTGAGTATGAAAATGAGGAGAGTGGTGATGAATCCAGAAGTGAGGCTGAGAGCAAGAGTGAGGTATCAGCAGAAGAGAAAGAAGATAAACAAGCAGAAAGTAAAGCCACTGAGTCagcagaggaggaaggagagaaccaagaagaggaagagagtggagcagaggaggaaggagagaaccaAGAAGACGAAGAGAGTGGAGCAGAGGAGGTAGGAGAGAaccaagaagaggaagagagtggagcagaggaggaaggagagaaccaAGAAGATGAAGAGAGTGgagcagaggaggaaggagagaaccaAGAAGACGTAGGGAGTGgagcagaggaggaaggagagaaccaAGAAGATGAAGGGAGTGgagcagaggaggaaggagagaaccaAGAAGATGAAGAGAGTGgagcagaggaggaaggagagaaccaAGAAGACGTAGGGAGTGgagcagaggaggaaggagagaaccaAGAAGATGAAGAGAGTGgagcagaggaggaaggagagaaccaAGAAGATGAAGAGAGTGgagcagaggaggaaggagagaaccaAGAAGACggagaggagaaggaaagtAGTGAAAGTAAAGAAAATGAGGAGGAGGCAGGCGTaagtgaggaggagggggaggaagatgaAGAAAGTGGAGAAGGTGAGGATGATGCAGGAGAGGGGGAAGCAGTTGAGGGTGAGGATGAAAAGGAAGGTGAAAAGGATGAGAACAACGAAGttgaagagggtgaggagggacGAGAAGATGATGAGAAAGAAgccaggggagaggaagaggttgaAGGTGgaaaaggtgaggaggaggaggaagaagaagaagaagaagaagaagaagaagagggagacaAAGAAGCAGAAGGAgaaaaggaaggagaggaagagggagaggaggaggaagaagaaagacagcaaggagagggggaggatgaaggaaaggaagagggtgAAGAAGAAGAGGAAATTAAGAATAGAGAAGATCAAGGAGAAGGAAAGGATGAGGAtatgaaagaaagagaagagaataatgagaagaaaggagaggatgagagtgAAAAGGGGGATGGTGAAaaacaggaagaggagaaagaggaaagaagagtgcatgaagagagagatgaggaagcaAATAAACAAAAAGAGGAAAGGGAGTGgcaagaggaggaagatgaggaagtgAAGGGAAAAaacggggagggggaggagaaggggggaggTAAAAAAGAAGGGAAAGAAAATAAGACAAGTGATTTGGAGGTAGaacaagaggaggaagaagagggcgCATGTGAACAGAAAGGGGAGATGGATGAGGAGGAaacgggagaggaggaaggggaaggagaagaagaggaagaggagaaagatagtaaaggagaggaagaggaggaagagggagaggaagaagaagagggagagggggaggaagaagaagagagaaaatcACAGAAAGGGATAAAGAAAGGGTCACAGAGCGTACCACCTAAAGCAGCTCCCCCCAGCAGGAAAGGGAAGGAAGAGCCCCCAATGGAGAAACCCAAACCACCGGCCCGCACCAAGCTGAGGACCACAGGGGGAAAACAGGCCAATGGAACCCAAGAATCCCAACAGTTCTGGAACAATGTCTTACCCCAGTACCTGGAGCTGAAGTGAAATATACTGGACATCAATGGTTCCCAATTTTATTTGGGTCAGAACCCATAACCTGACTGTTAATAACAGCTGGAATGGGTCTGGACCTCAGAAAACTAAGCCAGGTGCTCAATATACAGCACGACCCTACGTAAACTCCTTGAATTTAATCAATATCTGCATACAATTTACACAATATGCCCACTGTACTGTAAGGTACTGAACTGAGTGTACTCatgcactatactgtactgaattgtaatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacat

Function

NR:

description
calponin homology domain-containing protein DDB_G0272472-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959586.1 True 7364 mRNA 0.49 15 24053262 24072305

Neighbor

gene id symbol gene type direction distance location
LOC110502010 LOC106582139 coding downstream 2680 24022387 ~ 24050582 (-)
LOC110502070 NA coding downstream 94703 23951016 ~ 24038256 (-)
LOC110502014 LOC106582141 coding downstream 114540 23933860 ~ 23938722 (-)
appb LOC106582144 coding downstream 217615 23803577 ~ 23835647 (-)
LOC110502024 LOC106582147 coding downstream 264649 23776064 ~ 23788613 (-)
LOC110502032 NA coding upstream 9791 24082096 ~ 24085731 (-)
LOC110502019 LOC106582134 coding upstream 66359 24138664 ~ 24141597 (-)
naxd LOC106582132 coding upstream 69533 24141838 ~ 24147986 (-)
LOC110501998 LOC106582131 coding upstream 85688 24157993 ~ 24264287 (-)
LOC110502073 myo16 coding upstream 447269 24519574 ~ 24755850 (-)
G1791297 NA non-coding downstream 1434 24051613 ~ 24051828 (-)
G1791296 NA non-coding downstream 1700 24051300 ~ 24051562 (-)
G1791293 NA non-coding downstream 17086 24035538 ~ 24036176 (-)
G1791207 NA non-coding downstream 105957 23930604 ~ 23947305 (-)
G1791301 NA non-coding upstream 1498 24073803 ~ 24074051 (-)
G1791303 NA non-coding upstream 3046 24075351 ~ 24075573 (-)
G1791249 ube2al non-coding upstream 56803 24129108 ~ 24138203 (-)
G1791344 NA non-coding upstream 145562 24217867 ~ 24218370 (-)
G1791242 LOC106586666 non-coding upstream 247137 24319442 ~ 24324733 (-)
LOC110501997 LOC106582152 other downstream 592902 23368423 ~ 23460589 (-)
G1790280 NA other downstream 883899 23164481 ~ 23169363 (-)
G1789581 NA other downstream 1633764 22418130 ~ 22419498 (-)
LOC110501594 LOC106581696 other downstream 2232317 21788428 ~ 21913721 (-)
G1787166 NA other downstream 3597279 20390516 ~ 20455983 (-)
G1791405 NA other upstream 254424 24326729 ~ 24327127 (-)
G1792342 LOC106582127 other upstream 776286 24848591 ~ 24849752 (-)
G1792345 NA other upstream 784519 24856824 ~ 24857885 (-)
G1792433 NA other upstream 913654 24985959 ~ 24986268 (-)
LOC110501627 LOC106582113 other upstream 1638268 25709599 ~ 25744218 (-)

Expression


Co-expression Network