LOC110502019 (LOC106582134)


Basic Information

Item Value
gene id LOC110502019
gene name LOC106582134
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24138664 ~ 24141597 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959568.1
TGGTGAGTAAGAATTGCTCGCTAGTTGCGTAGCTTTATTTTTCGTGTTCAGACAATAATTAGTTTGAAGGCTAACGTCACTGCTAGCTTAGCTGTCGTTAGTTCGCTTCCAGGCTGTTAGCTCGTTTATGGGAAAGCTAGCTTTGTGTGGACTTCGACAGAAGAACATGCTAAATCCGGCAAACGGTGACCCGGTCCACGTCGTTACAAATTATGTGGAAGAATATTTGGACTTGGTCGAGTCACTACCATTCGACCTACAGAGGAGCGTGTCTCTTATGAAAGAAATTGACGCAAAATACCAAGATGTCCTGCAGGAGCTGGATGATGCTTATGAACGCTACCGTCGGGAGTCTGACCCTCTCCAGCGGCGCAGAATGCAGCTGTCCATCCAGAGAGCGCTCATCAGCAGCCAGGAGCTAGGAGATGAGAAGATCCAGATTGCTGGGCAGATGGTGGAATTGGTGGAGAACCGTAGCCGGCAGGTGGACTGGCATTCTGAGCTCCTCCACACCTCCCAGGAGATCCCAGAGATCCATGTACCCACATCAACTGCTATGACGACGACTACAGCCTCCATGTCAACGTTAGCAGTGACAACCACACCAGGCAAAGTGGGTCACCACGACAAGAGGCGTGACGAGGCAACGCCAGGCTCAGTCGGTGGAGGGGAAAAGTCTGGCGGGAAACGTTCGCGGCGGCAGAAGAACGGAGAGAACCGGGAGAGCTATGGAGGCATGGATCATGGTGATGAGGCAGGCATGGGGGCAGCCAGGGAAAAGAGGGCCAAAATGTCATCgtccaagaagaagaagaggtcAAAGGGCAAATCAGAGAGGGAGGTGTCACCCCCAGACCTGCCCATCGACCCAGATGAGCCCACCTACTGCCTGTGTGAACAGGTGTCTTACGGCGAGATGATTGGCTGTGATAACGACGAGTGTCCCATTGAGTGGTTCCACTTCTCCTGTGTGGGGCTACATCACAAGCCCAAGGGGAAGTGGTTCTGCCCCAAATGCAGGGGTGAGAATGAGAAGATCATGGACAAGGCCCTGGAGAGGGTGAAGAAGGAGAGGGCCTAcaacaggtagctagctagctgctctaCCTGGCCCAGTGAACGTTGTTTGTGGTCATGTTAGTGTTGTTTTTTGTTATTGTATTTTCTACTCCCAATTAGTATCAATGCTGTTTGAAAATGAAGAATTGGGGCCTCCCTAGTGGCACTTCAgtctaaggcgtcactacagacccgggttcaatcccatgctgtgtcgcagccagccgcgaccaggagacccatgaggcggcacacaattgtcccagGTTCTCCGGGTTAGGGGGAGgctttggccggccgggatgtccttgtcccatcgctctcTTGTCGctagttgtacggtgtttcctccgacacattggtgcggctggcttccgggttaagcaagcagtgtggcttggcagggttgtgttttggaggacgcatggctctcaaccttcgcctcttccGAGTCTGTACGGaattgcagcaatgggacaagactgtaactaccaattggatatcacaaagtTGGAGAGAATGGGGTTAAAAAGTACAAATGAAGAATTAGAAAGAGGGACTTGTCATTTTAGTAAAGGCTGTACTGTAAGATGGACATCCTAGTTCAGTACCACTGGTTTAGAGCAGATATGTAATACAGATTATTGTAGCCACACCAATGATTGACGCTAGTGTATCATGCATGCAACCATACTAGCCATATTGCTCCATAcgaacaaataaaacattttaaccaAGATTGCGTGCTGAAAGTCATTTTAGACATGTACTATATTACAAGGTGGCTTACAGATATGAATGCAATGTGCTTCCTATGTTGAATTGTCTTTGCATCATCTGTATTTACCATGGGATGTGACAAGAGCCATTAGTAAGGGCTGCTCTAGCAGCAAAAGTTGTTGAGATGGTTAAATTGATAATACTCATGTTTGACTGATGGCATGGGGCCTGTAGTTGTGAGGACAGTCACTTGTGACACCAGtaaaaaatgttatttaaatgCA
>XM_021579924.2
GCATACACATGTACAGTTCTCCACGTTGGACCAGACGCAATCAATACATAGTTGAGTTACAAGATTCTCCAGTTGGATTGAATACATTGTATGAAGTTCATTAAACGGCAAATATAAAGTTGCTGATGTCCTGCAGGAGCTGGATGATGCTTATGAACGCTACCGTCGGGAGTCTGACCCTCTCCAGCGGCGCAGAATGCAGCTGTCCATCCAGAGAGCGCTCATCAGCAGCCAGGAGCTAGGAGATGAGAAGATCCAGATTGCTGGGCAGATGGTGGAATTGGTGGAGAACCGTAGCCGGCAGGTGGACTGGCATTCTGAGCTCCTCCACACCTCCCAGGAGATCCCAGAGATCCATGTACCCACATCAACTGCTATGACGACGACTACAGCCTCCATGTCAACGTTAGCAGTGACAACCACACCAGGCAAAGTGGGTCACCACGACAAGAGGCGTGACGAGGCAACGCCAGGCTCAGTCGGTGGAGGGGAAAAGTCTGGCGGGAAACGTTCGCGGCGGCAGAAGAACGGAGAGAACCGGGAGAGCTATGGAGGCATGGATCATGGTGATGAGGCAGGCATGGGGGCAGCCAGGGAAAAGAGGGCCAAAATGTCATCgtccaagaagaagaagaggtcAAAGGGCAAATCAGAGAGGGAGGTGTCACCCCCAGACCTGCCCATCGACCCAGATGAGCCCACCTACTGCCTGTGTGAACAGGTGTCTTACGGCGAGATGATTGGCTGTGATAACGACGAGTGTCCCATTGAGTGGTTCCACTTCTCCTGTGTGGGGCTACATCACAAGCCCAAGGGGAAGTGGTTCTGCCCCAAATGCAGGGGTGAGAATGAGAAGATCATGGACAAGGCCCTGGAGAGGGTGAAGAAGGAGAGGGCCTAcaacaggtagctagctagctgctctaCCTGGCCCAGTGAACGTTGTTTGTGGTCATGTTAGTGTTGTTTTTTGTTATTGTATTTTCTACTCCCAATTAGTATCAATGCTGTTTGAAAATGAAGAATTGGGGCCTCCCTAGTGGCACTTCAgtctaaggcgtcactacagacccgggttcaatcccatgctgtgtcgcagccagccgcgaccaggagacccatgaggcggcacacaattgtcccagGTTCTCCGGGTTAGGGGGAGgctttggccggccgggatgtccttgtcccatcgctctcTTGTCGctagttgtacggtgtttcctccgacacattggtgcggctggcttccgggttaagcaagcagtgtggcttggcagggttgtgttttggaggacgcatggctctcaaccttcgcctcttccGAGTCTGTACGGaattgcagcaatgggacaagactgtaactaccaattggatatcacaaagtTGGAGAGAATGGGGTTAAAAAGTACAAATGAAGAATTAGAAAGAGGGACTTGTCATTTTAGTAAAGGCTGTACTGTAAGATGGACATCCTAGTTCAGTACCACTGGTTTAGAGCAGATATGTAATACAGATTATTGTAGCCACACCAATGATTGACGCTAGTGTATCATGCATGCAACCATACTAGCCATATTGCTCCATAcgaacaaataaaacattttaaccaAGATTGCGTGCTGAAAGTCATTTTAGACATGTACTATATTACAAGGTGGCTTACAGATATGAATGCAATGTGCTTCCTATGTTGAATTGTCTTTGCATCATCTGTATTTACCATGGGATGTGACAAGAGCCATTAGTAAGGGCTGCTCTAGCAGCAAAAGTTGTTGAGATGGTTAAATTGATAATACTCATGTTTGACTGATGGCATGGGGCCTGTAGTTGTGAGGACAGTCACTTGTGACACCAGtaaaaaatgttatttaaatgCA
>XM_021579923.2
GATTTGTTTCTGATATGATGCGCATGCGCATACACATGTACAGTTCTCCACGTTGGACCAGACGCAATCAATACATAGTTGAGTTACAAGATTCTCCAGTTGGATTGAATACATTGTATGAAGTTCATTAAACGGCAAATATAAAGTTGCTGCTTTGTGTGGACTTCGACAGAAGAACATGCTAAATCCGGCAAACGGTGACCCGGTCCACGTCGTTACAAATTATGTGGAAGAATATTTGGACTTGGTCGAGTCACTACCATTCGACCTACAGAGGAGCGTGTCTCTTATGAAAGAAATTGACGCAAAATACCAAGATGTCCTGCAGGAGCTGGATGATGCTTATGAACGCTACCGTCGGGAGTCTGACCCTCTCCAGCGGCGCAGAATGCAGCTGTCCATCCAGAGAGCGCTCATCAGCAGCCAGGAGCTAGGAGATGAGAAGATCCAGATTGCTGGGCAGATGGTGGAATTGGTGGAGAACCGTAGCCGGCAGGTGGACTGGCATTCTGAGCTCCTCCACACCTCCCAGGAGATCCCAGAGATCCATGTACCCACATCAACTGCTATGACGACGACTACAGCCTCCATGTCAACGTTAGCAGTGACAACCACACCAGGCAAAGTGGGTCACCACGACAAGAGGCGTGACGAGGCAACGCCAGGCTCAGTCGGTGGAGGGGAAAAGTCTGGCGGGAAACGTTCGCGGCGGCAGAAGAACGGAGAGAACCGGGAGAGCTATGGAGGCATGGATCATGGTGATGAGGCAGGCATGGGGGCAGCCAGGGAAAAGAGGGCCAAAATGTCATCgtccaagaagaagaagaggtcAAAGGGCAAATCAGAGAGGGAGGTGTCACCCCCAGACCTGCCCATCGACCCAGATGAGCCCACCTACTGCCTGTGTGAACAGGTGTCTTACGGCGAGATGATTGGCTGTGATAACGACGAGTGTCCCATTGAGTGGTTCCACTTCTCCTGTGTGGGGCTACATCACAAGCCCAAGGGGAAGTGGTTCTGCCCCAAATGCAGGGGTGAGAATGAGAAGATCATGGACAAGGCCCTGGAGAGGGTGAAGAAGGAGAGGGCCTAcaacaggtagctagctagctgctctaCCTGGCCCAGTGAACGTTGTTTGTGGTCATGTTAGTGTTGTTTTTTGTTATTGTATTTTCTACTCCCAATTAGTATCAATGCTGTTTGAAAATGAAGAATTGGGGCCTCCCTAGTGGCACTTCAgtctaaggcgtcactacagacccgggttcaatcccatgctgtgtcgcagccagccgcgaccaggagacccatgaggcggcacacaattgtcccagGTTCTCCGGGTTAGGGGGAGgctttggccggccgggatgtccttgtcccatcgctctcTTGTCGctagttgtacggtgtttcctccgacacattggtgcggctggcttccgggttaagcaagcagtgtggcttggcagggttgtgttttggaggacgcatggctctcaaccttcgcctcttccGAGTCTGTACGGaattgcagcaatgggacaagactgtaactaccaattggatatcacaaagtTGGAGAGAATGGGGTTAAAAAGTACAAATGAAGAATTAGAAAGAGGGACTTGTCATTTTAGTAAAGGCTGTACTGTAAGATGGACATCCTAGTTCAGTACCACTGGTTTAGAGCAGATATGTAATACAGATTATTGTAGCCACACCAATGATTGACGCTAGTGTATCATGCATGCAACCATACTAGCCATATTGCTCCATAcgaacaaataaaacattttaaccaAGATTGCGTGCTGAAAGTCATTTTAGACATGTACTATATTACAAGGTGGCTTACAGATATGAATGCAATGTGCTTCCTATGTTGAATTGTCTTTGCATCATCTGTATTTACCATGGGATGTGACAAGAGCCATTAGTAAGGGCTGCTCTAGCAGCAAAAGTTGTTGAGATGGTTAAATTGATAATACTCATGTTTGACTGATGGCATGGGGCCTGTAGTTGTGAGGACAGTCACTTGTGACACCAGtaaaaaatgttatttaaatgCA

Function

NR:

description
inhibitor of growth protein 1-like isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959568.1 False 2063 mRNA 0.49 4 24138664 24141447
XM_021579924.2 False 1883 mRNA 0.49 3 24138664 24141570
XM_021579923.2 True 2075 mRNA 0.49 4 24138664 24141597

Neighbor

gene id symbol gene type direction distance location
LOC110502032 NA coding downstream 52933 24082096 ~ 24085731 (-)
LOC110502071 LOC106582043 coding downstream 66359 24053262 ~ 24072305 (-)
LOC110502010 LOC106582139 coding downstream 88082 24022387 ~ 24050582 (-)
LOC110502070 NA coding downstream 180105 23951016 ~ 24038256 (-)
LOC110502014 LOC106582141 coding downstream 199942 23933860 ~ 23938722 (-)
naxd LOC106582132 coding upstream 241 24141838 ~ 24147986 (-)
LOC110501998 LOC106582131 coding upstream 16396 24157993 ~ 24264287 (-)
LOC110502073 myo16 coding upstream 377977 24519574 ~ 24755850 (-)
tnfsf13b tnfsf13b coding upstream 633121 24774718 ~ 24778935 (-)
LOC110501608 LOC106582128 coding upstream 637808 24779405 ~ 24785002 (-)
G1791249 ube2al non-coding downstream 461 24129108 ~ 24138203 (-)
G1791303 NA non-coding downstream 63091 24075351 ~ 24075573 (-)
G1791301 NA non-coding downstream 64613 24073803 ~ 24074051 (-)
G1791297 NA non-coding downstream 86836 24051613 ~ 24051828 (-)
G1791296 NA non-coding downstream 87102 24051300 ~ 24051562 (-)
G1791344 NA non-coding upstream 76270 24217867 ~ 24218370 (-)
G1791242 LOC106586666 non-coding upstream 177845 24319442 ~ 24324733 (-)
G1791474 NA non-coding upstream 228040 24369637 ~ 24370091 (-)
G1791788 NA non-coding upstream 307598 24449195 ~ 24449517 (-)
LOC110501997 LOC106582152 other downstream 678304 23368423 ~ 23460589 (-)
G1790280 NA other downstream 969301 23164481 ~ 23169363 (-)
G1789581 NA other downstream 1719166 22418130 ~ 22419498 (-)
LOC110501594 LOC106581696 other downstream 2317719 21788428 ~ 21913721 (-)
G1787166 NA other downstream 3682681 20390516 ~ 20455983 (-)
G1791405 NA other upstream 185132 24326729 ~ 24327127 (-)
G1792342 LOC106582127 other upstream 706994 24848591 ~ 24849752 (-)
G1792345 NA other upstream 715227 24856824 ~ 24857885 (-)
G1792433 NA other upstream 844362 24985959 ~ 24986268 (-)
LOC110501627 LOC106582113 other upstream 1568976 25709599 ~ 25744218 (-)

Expression


Co-expression Network