rab20 (LOC106582135)


Basic Information

Item Value
gene id rab20
gene name LOC106582135
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24148044 ~ 24157384 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579928.2
GTTTCACCACAACTTTGAAATTCACTTTCAACAAGTGGACGAGAGAGGGAAGATCGGTGTTCTTCCGATTAGTCGTGCTTTTTGGTCGTATTGATAATCGCTTGAGTAATATCGAAGACCAAGGACgatgtatgtgtgttttaatctGTTTATGTTAAGTAGCTATGTTTTTTAATGGCAATCTGTACCTACATTGCTCTTTATCCGTAAACTAAAGGAAAGTAAAGCAAAGTTAGTTTGGAGTGTGTCTGCTACACGGCTGAGGAAGGCTGTCAAGCGGCGCGGGGCAATAACCATGCCCGAGCTTTCCAAGATGAGGAAGCCCGATGTCAAGGTTGTCATTCTGGGTGACATGAACGTTGGGAAGACCTCACTGCTCCACAGGTACATGGATAGGAAGTTTAAAGACACCATGAGCACCGTCGGAGGGGCGTTTTTCCTCAAACAGTGGGGACCTTACAATATCTCAATTTGGGACACTGCTGGTCGGGAGCAGTTCCACGGGCTGGGCTCCATGTACTGCCGGGGCGCTGCTGCTGCCATCCTCACCTACGATGTGACCAACTGGCAGAGCCTGGCTGAGCTGGAGGAGCGCTTCCTGTCCCTCACCGACACGGCCAATAACGACTGCATCTACGCCATCGTGGGCAACAAGGCTGACCTCACAGACCCCCAGGCCCAGCTGCTAGCCAACCAGGATGGCCTGACAGCGGACCAAAGAGTGGGGGACTGGGAGAGGACTGGGGAGCCCAGGGTGCCTTCTGCTTGTCCCACCCCTCCAGcctcccccatctccctgtcAGGGGTGTCAGTCAACAAGCAGGTGAGCCGGGAGGACGCAGAGGCGTTGTATGGGAGGATCCTTAGATACAAGGGTCTGGAAGAGACGAACAGCCTGCCTGCGGACAAGATGTGCTTTGAGACTAGTGCCAAGACAGGCTACAACGTAGACGCTCTGTTTGAGACGCTGTTCGACATGGTGCTTCCCTCCGTCCTCAAgaagaggactgagagagagggatcgtCCACCGTGGACCTGGAAGAGTGCAAAGGGACAGGAAAACGGGCTAGGGCCGCCTGCTGCTAGGGATTAGGGGTAGGTGGGGAGGGATGGATAaactgtttgggggttttagacTGACCGTAAAGAGAGGAGTTCATGTCATCTCTGTATTGGTCTCCCAGGACATTCTGAGAATTTTCAGCGGTGACTGTTTGAtatacacacacctgcacacacattCTTTCAATCAAGCTGTCAATCAAATTAATAATTAAAACAAGTCATTTAATTATTATTTCAATGAGCCGGAAAGTACTATATTGGAGAGCTGGAGTAAGGCGTTCTTGGATTTTAAACATCTTCGAGAGGTTCTGTATGGACTTGAGTTCAGGCCAGAATTTCTGTATGTGTAGAGCAGATTAGCGTTTTATGTAATTAATCTTCTcggcagagtggtcactagctggcgcagccacaaagtcataaaatcagatttttaaacttaaccacactgctaaacataaccttaaattaagagcaaaaagctatttttttgttttcatgaatttttatgaTATTGCCCATTTTGACTTTGCAGGTGGCCAATCTATTGGCTCTAGGGCAAGATGCATGACATGTCAACCTGGATATGGGAAATAGACTACTGGTTCACCTGTTTATAAATCAATCATTTAATTCTTGTTCATGTTTTGGAATGAGAATGTCACTGACtttgtttccatccacagtttttatgcgagtaaagtcattCTGTATCCCCAAAACAATCACGACAACTGTGAGGGAAACAGGACGTTTCGGTACAGTTTTATAAATGCCAACAGATTTGTTCGTTTGACATGGTGGCATCTTTCTGTCGGCGAAATTAATTGTGCGAGAAATGGAGTTGGAAATGCCTTTATGCGCAGATATTGTTACAATAACCagcatatcgaagtaaacttggagtcacgcgatatGATGTGTGTGGTCCCCCAATACGACTCGGGATAAGATAAGTTATGACGAACtttacagggtggtgaaagtgcatggtgATGAGAGAGCTGGTCCTTTTCAATAAATATCAAGTGACGTGTGACGTGAttatcgatgcttgactgccgtttgaccAATAAAAATATCCATAATCT

Function

NR:

description
ras-related protein Rab-20-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07911 RAB20; Ras-related protein Rab-20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579928.2 True 2157 mRNA 0.46 2 24148044 24157384
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110502026 ube2al coding upstream 10119 24125893 ~ 24137925 (+)
LOC110502017 LOC106582137 coding upstream 29798 24084901 ~ 24118246 (+)
LOC110502003 LOC106582138 coding upstream 125507 23956163 ~ 24023376 (+)
LOC110502009 LOC106582142 coding upstream 246061 23881233 ~ 23901983 (+)
LOC110502020 LOC106582143 coding upstream 279205 23840898 ~ 23868839 (+)
LOC110501999 LOC106586666 coding downstream 106947 24264331 ~ 24324757 (+)
LOC110501605 LOC106582130 coding downstream 249566 24394068 ~ 24423067 (+)
LOC110501609 fam155a coding downstream 691130 24848514 ~ 25013655 (+)
LOC110501611 pdzd1 coding downstream 997713 25155097 ~ 25162839 (+)
LOC110501614 ox2g coding downstream 1036051 25193435 ~ 25223476 (+)
G1790801 NA non-coding upstream 6847 24140772 ~ 24141197 (+)
G1790825 NA non-coding upstream 24846 24122814 ~ 24123198 (+)
G1790814 NA non-coding upstream 70276 24077538 ~ 24077768 (+)
G1790785 NA non-coding upstream 96881 24050880 ~ 24051163 (+)
G1790803 NA non-coding downstream 167509 24324893 ~ 24325151 (+)
G1791414 NA non-coding downstream 176491 24333875 ~ 24334595 (+)
G1791424 NA non-coding downstream 181815 24339199 ~ 24339878 (+)
G1791450 NA non-coding downstream 200203 24357587 ~ 24357951 (+)
G1791460 NA non-coding downstream 204537 24361921 ~ 24362147 (+)
G1790805 NA other upstream 28569 24118562 ~ 24119475 (+)
G1790442 LOC106582152 other upstream 715661 23416093 ~ 23432383 (+)
G1788815 LOC100136012 other upstream 2148421 21998473 ~ 21999623 (+)
G1788811 LOC106581691 other upstream 2151951 21995364 ~ 21996093 (+)
G1787719 NA other upstream 3011567 21134265 ~ 21136477 (+)
G1792040 NA other downstream 685558 24842942 ~ 24843285 (+)
G1792649 NA other downstream 1137162 25294546 ~ 25296557 (+)
G1793045 NA other downstream 1573942 25731326 ~ 25731754 (+)

Expression

rab20(LOC106582135) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
End of interactive chart.

rab20(LOC106582135) Expression in each Bioproject

Bar chart with 21 bars.
rab20(LOC106582135) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network