LOC110501998 (LOC106582131)


Basic Information

Item Value
gene id LOC110501998
gene name LOC106582131
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24157993 ~ 24264287 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579872.2
CACTTCAACTTTTGACTGTTAGGATAAAGACAGGATAAAGACTGCCCTCAGTCTTTTGGTAattttgtctgtatatttgagGATAGTGTGGTGAGCGGGCGACCGGGACAACTGTGCGGTGATTTGAGTTCTTGCCGCGAGACTCTTCCCCGAAAGCGCAACACGTCCCAGGAAGAGTGCACACAACGACTTTTCGTTCGTGGCCCACCCGATATGCATTAGGGTAGTCGCACCTGGAGAAGAAGATAGGCGCAGTAATAATGAAGTTTGAAGTTCGGATGAGCGGGACAATGCAGACAAGACACCGGATTGAACTGAAGAGCCTGAAGTTTCTGTTTCTATGTCTTTCTGTGGCCATCCTAGCATCAGGAGTTGACGCAGGTGGTAAGAAGCACAATGGGCCATGTGGAGGAAGAGACTGCAGCGGGGGATGCAAATGTTTCCCTGAGAAGGGCGCCAGGggcCAACCTGGTCCTCTTGGCCCGCAGGGACCCCATGGGCCTCCAGGGGGCCTAGGGGATCCAGGAGTACAAGGAGTCCAAGGAGAGAAGGGCGACCGGGGCAGAGGAGGCTTCATCGGCCCCAAGGGTTCTGTGGGGATGACTGGTGTTCCTGGGTTTTCTGGATCTGACGGTATTCCTGGCCATCCAGGACAGGCAGGGACTCGTGGGAAACCTGGAGCAGACGGGTGCAACGGAACACACGGAGATTCAGGGTTGTCAGGGAAACCAGGCTACGATGGCCAGCCCGGGTATAATggtcaggcaggcagaaagggACAGAAGGGAGACACTCTGGAGCTTAGTGTGTTCATGGAGCGGTTCAGGGGAGATTCAGGACAGCCCGGATATCCTGGATTTGTTggtccTCAAGGTTACCCAGGTCGGTCGGGCTACAGAGGACTACCAGGACCACAGGGCCCATTAGGGTTCCCTGGCCTTCCTGGACCAAAGGGCACCATGACCAAAGTGTTGAAGGGGGTCAAAGGAGAAGCGGGTGAGGCTGGACAGCAAGGTCCCCCAGGGAACTCCACCCATCCTCATACCAGCCCACTTACCGGACCCTACGGCAGAAAGGGTGAAAAAGGGTTGAAAGGTGAAACTGGAGTTGAGGCTGACAACAAAGGAGAGACTGGGATTATGGGGATGCCTGGGCAAAGGGGTGTCCCTGGTCGGGATGGAGAGCAAGGACTAAGGGGGGACCTTGGAGAACCAGGATTTAGGGGCAGAGATGGCCAAAAGGGTGCCATCGGAGAACCTGGGGAGTTGATCTATTATGAAGGTCCCTCAGGAGGGCCTAACAGAGTTGGTCCCCCTGGACAGCTGGGACCCCAGGGAGAGATGGGTTTGCAGGGGGAGAAAGGTCTGCCAGGCCGGGCTGGACCTCCTGCTAGGAAGAGTGATAGTCAAATACAAGTGGAGTACCTGTGGGGTCCGTTCGGGGAACCGGGGGTAAAGGGAGAGACGGGCCCACCTGGAGAGCCAGGTATCCCTGCTCTCAGCCCCGGACCCCCAGGTATCGGCGGAATATCTGGGTTGAGGGGCCCACCTGGACCACCAGGATCATGGGCGGACTTCTACAAGGGATTTGCTGGGTCGAGAGGGCGGCCAGGCTCTGCGGGGAGAAAAGGACTGAAAGGTGATCACGGGTTGTGTGAGTGCAACATTGTCCACTCTCCTCCGGGCCTGCCTGGCCCTGCTGGTAGCCAAGGCGACCCTGGAATGAGTGGCGAGTTTGGTCAGCAGGGCGATCCAGGCGAGCCAGGACCCCGAGGTGTCATCGGACTGCCTGGGTTCCCTGGTGCCACAGGACAACCGGGTCCAAAGGGCAGGAAGGGCGAGTTAATTTGGGCCAAAGAGAAAGGATATGCTGGGGACCCAGGAGACCCGGGTGCGACTGGTGAACCAGGATTGCAGGGCTTCCCTGGGCCAAGTGGGATCAATGGATTCCCTGGGAACCGTGGTCTTTCAGGGGACGCACCTGAGGGACTCACTGGAGAAAAGGGTTATCCTGGCCGGTCGGGTCTCCCTGGGTTGTttggagagatgggagaaccgGGACGGGTTCTAGGTGCCACTAAAGGGGTCAGAGGGTTACAAGGCGATGATGGGGAGCCGGGTTACGCTGGTGTCGAAGGTCGAGCTGGAGATCCAGGAGTGTCTGGCTGTAGTCCGAGAGGAGATGGACGACTGAATGACAAAGGCGATTGTGATGCCGTACCCGGACCACCCGGTATGCCAGGACCACCAGGACCCCAAGGGTTAGTGGGTTTCCCAGGCATCCCAGGTCAAAATGGATTCACAGGTCCACTTGGAGATGACGGGGCCAAAGGAGAGATAGGAGAGCAAGGCATAGGAGGGTCTCCCGGACAGCCAGGTTTCACTGGCCCCCGTGGAGACTTGGGTCAGCCCGGCGCCAAGGGTAAACCTGGAGATCAAGGTCTGCCAGGCCAACAGGGCCGGGACGGGGAGTCCGGGGAAAAGGGACCACACGGAGAGATCTGGGGAGCGTCAACCGGACAAACTGGAGAAGTGGGTCTTCCTGGAGAGCAGGGACCTAAAGGTTTTAGCGGAGAGCCTGGAAACGAGGGCTACCCAGGGATGGGTGGCATGCCTGGGATGATTGGGTTCAAGGGCGACGTGGGTCCTTCAGGTCTACAAGGGGAGCAAGGAAGACCGGGAGATGCTGGGAAGTACGGCTGGAAAGGTGTACCCGGACAGGCGGGAGTCCATGGACCAACAGGAAGCATCGGACAACCAGGTTTGAGCGGAAGCAGGGGTGATCAGGGCGACCCTGGCGCCCCGGGGCCAATAGGACTGAAGGGGACACCAGGGGAGTTTGGAGGTCTGGGTGCTGAGGGAAACACCGGACACCTGGGTGACCCTGGAGAGCCAGGACCTACAGGACACTCTGGCCTGCCAGGGTTCAAAGGTATCAAAGGTTCTCGTGGCATGTCAGGGTTTGGAGGTATGCCCGGTGAGTCGGGCCTGAAGGGCTTCTCTGGACAGAAGGGAGAGGATGGCATACCTGGCGGATTTGGACAGAAAGGAATCATGGGCGACTATGGTTCAAAGGGTGAACGTGGTCTGAGTGGCCTGCCAGGCGAGAAACCCCTCATCCCTCGTCAGATCATCAATGACATGAAGGGGACCAAGGGAGAAGATGGAACCCTAGGACAAATCGGATTTACTGGACCCAGAGGTCCGAAAGGTTTTCCCGGAGTTCCGGGTATGGAGGGCTACCATGGCGTTCCCGGAGACCCCAGCGATGAGAAGGGTTTCCCAGGCAACCCAGGGGCGCAGGGACTTCCAGGGCCAAAAGGAATGCCAGGTCCGACTGGATCAAACGGAATCAGCGGCTTTCCTGGGATGTCTGGTCATAGGGGGGAGAAAGGTACCCCGGGTGCCTACGGATCTTTAGGAGATCCAGGAGTGAAGGGTGTCAAAGGTGAGGAGGGTCCCATAATCGACATGCCTGGATCCACAGGACTGAGGGGGGAGGATGGTTTCCCAGGGGTTCCAGGTCAGAAGGGCTACATTGGGAATCCGGGAGACAGGGGCGGTGGTGGTTTCCATGGTATTGATGGCATGAAAGGGGGGCTGGGAGAGCCTGGCATAGGAGGACCTCTAGGATCTGATGGTCAAGGAGGGTTTCAAGGCAACCAGGGTACGAAGGGATGGCCTGGGATCCCCGGAGAATCAGGCACAAATGGACGGCCAGGCTTCCCAGGacagagagGTTTTCCTGGACTGAAGGGTATATTGGGACTGGATGGACTGAAGGGTGAGAAGGGCATCCCTGGACTTCCAGGTCAGGATAACTTGGGAACCCCAGGTGTTCCTGGTGCTAAGGGAACGAGGGGTGAGACAGGTATACCCAACTCAGAGGTCGGGACCCCAGGATCGCTGGGTTTGAAGGGCGTTCAAGGACAACCAGGTGACCAGGGCCAGGTGGGACTCCCAGGGTTTCAGGGCCCCCAAGGACCACAGGGCACCTCAGACAAACCTGGACCATCAGGAGACCCTGGCTTCCCTGGACCCAAAGGGCTGCCAGGTTTCCCTGGGCCCCGTGGATATCCTGGTGAGCCCTCTCCATACGGAGAGAAGGGTTTAGCTGGCCACTATGGCTTCCctggattctctggtctgaaagGAAAGCAGGGGGATCAGGGACCATCAGGCTACAAAGGACAGAGTGGAGTGTCTGGGAAGAAAGGTGTGAAGGGAGAGCAAGGGATGATGGGAATTCCTGGTAGGTTTGGTTTCCAAGGAGACCGAGGTCCTTCTGGCCCAAAAGGAAATACTGGACTCATAGGTTACCCGGGAGCCCCAGGTAACCAGGGCCCAGCCCCAGTCCCCCCCAGGATACCAGGAGAAAGGGGTGCTCCAGGGCCTCAGGGCATCCGAGGACCTGAGGGGGTACGAGGGGAGACTGGCCCGAAAGGACCCCCTGGAGCTCCAGGCTACCTGGGCCCCCAGGGGCAGAGGGGGATGCCAGGGGTGGGTGGCAGACCGGGTACCCCTGGGTACCGTGGAAATGACGGAGGGAGGGGCCACCTTGGTCTTCAGGGCATGGAAGGACACCGTGGTAACCCAGGTACTACAGGGTTGCCTGGCATGCCTGGACGCAGTGTGAGTGTGGGATATCTGCTGGTGAAGCACAGCCAATCAGAGCAGACCCCCATGTGCCCCGTGGGCATGTCCAAGCTGTGGGatggctacagtctactgtacttTGAGGGCCAGGAGAAGGCCCACAACCAGGACCTAGGTCTGGCAGGCTCCTGCCTCCCTCGTTTCAACACCATGCCCTTCCTGTACTGCAATCCCGGAGACGTCTGCTACTATGCCAGCCGCAATGACAAGTCCTATTGGCTGTCCACCACCGCACCCCTTCCCATGATGCCCGTGGAAGAGGAAGAGATCAAACCCTACATCAGCCGCTGCTCTGTGTGCGAGGCGCCATCCGTCGCCATCGCCGTGCACAGCCAGGACATCACCATCCCACAATGCCCTGTGGGCTGGCGCAGCTTGTGGATTGGCTACTCCTTCCTTATGCACACAGCAGCAGGTGACGAGGGCGGTGGTCAGTCTCTGTCGTCCCCTGGTTCCTGTCTAGAGGACTTCCGCACCACTCCCTTCATCGAGTGTAACGGGGCCAAGGGCACCTGCCATTACTTCGCCAACAAACACAGCTTCTGGCTGACCTCCATCGAACAGTCCTTCCAGGCAGAGCCTGCCTCCGAGACCCTGAAAGCAGGCCAGTTCCTCTCACGCATCAGCCGCTGTCAGGTCTGCATGAAGAACCTGTGACCTGGCTCTCACTTAGTCCCCTTTGACCCTGTGATGTAATTTCCTGTGACCGTACCCCCCCACCACCAAACGCAATTCAGGTAGACATTAcacttaggcacagatctaggattagcTCACCCTCCCTAAATCTTAACCTTAGCCATAATGGGGAGAACACAAAACAGACCTTAGATCAGCATCTTGTGATGACTGAAGGACTGTGTGAACGCTTCAAGTGGAGAGCAGGTGTCCTGTGGTGATAATTGGAAAAGAATCCCCGGCATGAAGTCAACAGCGATATGAAATATACATGTTAatgttatttttaaaatgtttgtccTATTTGATATGGTGCTCTAACTTATTACCTCAGCtatgttatatacagtgcatttagaaagtattcagaccccttcactttttccacattgttacgttacagccttattctaaactgtattaaataaaacaaattcctgtctacacacaataccccataatggcaaagcaaaaagttaactttttattttttacaaatgcattaaaaaacacacaaaaaaacagaaataccgtaTTTACgtaagtatccagaccctttgcgatgagtctctaaattgagctcaggtgcatcctgtttctacaacttgattggagtccacatgtggtaaattctattgattggacaggatttagaaagaaacacacctgtctatataaggccccactgttgacagtgcatgtcagagcaaaaaccaagccatgaggtcaaaggaattgtctgtagaaacTCCCCAActacaggtgtgacaagcttgtagtgTCTCCAGgctgtactgagtaaagggtctgaatactaatgtaaaatgtgtttttttgtttttaatacaaaAACACTcataacctgttttcactttgtcattatggggtattgtgtgtgattGATGGGGggacaatttcatccattttagaataaggctgtactgtaacaaaatgtggaaaaagtatactatccgaatgcactgtaccaaaCATGTTTAACTGACCATACCAAGAACATACAGCTGAAAGAACCAAAGATGCCTGTGTACACACTGCTTCAGTTATCAATGAAGCTAATGATTGATAatattgattgtgtgtgtgtgcactgcttGCACTGCTTCAGTTTAGATTTAAGTGCGCTTACATTTTATTCAGGTATACAGTAATGCCACGACACTAACACTGACCCTCTACCAATTGTAAATTAGGTTTGGTTGAGGTTTAAGTGAGAAGAAATGCTCTTAACATTCAGTATTAATCTGCTTTACGTCAAGTCTTCTCACGTAACATAACATTTATGCATCAAGAGGCCTTACAGTGCAAACTGTTTGTTAGCAATGTATCAATATATATAACCCTAATCTTACATTCATATATTGTTTTGGTCACAAAATGCACTGATTTACTTTCCTACGTATATTTATATCCACTGAATGAAATTGATTTTTATGTTTCTcagaacaaaaaatatattttgtaaaaTTGGCCATGAGTTCGATGTGCTATGAATCCATTGAATTCTATTGTAATTGAGTCATAACAAAAAATTAAATGTTGTGTTTGTTATA

Function

NR:

description
collagen alpha-2(IV) chain-like

GO: NA

KEGG:

id description
K06237 COL4A; collagen type IV alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579872.2 True 6904 mRNA 0.54 47 24157993 24264287

Neighbor

gene id symbol gene type direction distance location
naxd LOC106582132 coding downstream 10007 24141838 ~ 24147986 (-)
LOC110502019 LOC106582134 coding downstream 16396 24138664 ~ 24141597 (-)
LOC110502032 NA coding downstream 72262 24082096 ~ 24085731 (-)
LOC110502071 LOC106582043 coding downstream 85688 24053262 ~ 24072305 (-)
LOC110502010 LOC106582139 coding downstream 107411 24022387 ~ 24050582 (-)
LOC110502073 myo16 coding upstream 255287 24519574 ~ 24755850 (-)
tnfsf13b tnfsf13b coding upstream 510431 24774718 ~ 24778935 (-)
LOC110501608 LOC106582128 coding upstream 515118 24779405 ~ 24785002 (-)
LOC110501610 LOC106582126 coding upstream 835154 25099441 ~ 25149856 (-)
LOC110501612 LOC107389858 coding upstream 898902 25163189 ~ 25176805 (-)
G1791249 ube2al non-coding downstream 19790 24129108 ~ 24138203 (-)
G1791303 NA non-coding downstream 82420 24075351 ~ 24075573 (-)
G1791301 NA non-coding downstream 83942 24073803 ~ 24074051 (-)
G1791297 NA non-coding downstream 106165 24051613 ~ 24051828 (-)
G1791296 NA non-coding downstream 106431 24051300 ~ 24051562 (-)
G1791242 LOC106586666 non-coding upstream 55155 24319442 ~ 24324733 (-)
G1791474 NA non-coding upstream 105350 24369637 ~ 24370091 (-)
G1791788 NA non-coding upstream 184908 24449195 ~ 24449517 (-)
G1791855 NA non-coding upstream 297036 24561323 ~ 24561523 (-)
LOC110501997 LOC106582152 other downstream 697633 23368423 ~ 23460589 (-)
G1790280 NA other downstream 988630 23164481 ~ 23169363 (-)
G1789581 NA other downstream 1738495 22418130 ~ 22419498 (-)
LOC110501594 LOC106581696 other downstream 2337048 21788428 ~ 21913721 (-)
G1787166 NA other downstream 3702010 20390516 ~ 20455983 (-)
G1791405 NA other upstream 62442 24326729 ~ 24327127 (-)
G1792342 LOC106582127 other upstream 584304 24848591 ~ 24849752 (-)
G1792345 NA other upstream 592537 24856824 ~ 24857885 (-)
G1792433 NA other upstream 721672 24985959 ~ 24986268 (-)
LOC110501627 LOC106582113 other upstream 1446286 25709599 ~ 25744218 (-)

Expression


Co-expression Network