Gene
RNA
| Item | Value |
|---|---|
| gene id | tnfsf13b |
| gene name | tnfsf13b |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048586.1 |
| NCBI id | CM023240.2 |
| chromosome length | 52474311 |
| location | 24774718 ~ 24778935 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| tnfsf13b | Predicted to enable receptor ligand activity. Involved in B cell homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Orthologous to human TNFSF13B (TNF superfamily member 13b). |
| description |
|---|
| tumor necrosis factor ligand superfamily member 13B |
| id | name | namespace |
|---|---|---|
| GO:0006955 | immune response | biological_process |
| GO:0005615 | extracellular space | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0005125 | cytokine activity | molecular_function |
| GO:0005164 | tumor necrosis factor receptor binding | molecular_function |
| id | description |
|---|---|
| K05476 | TNFSF13B, TNFSF20, CD257; tumor necrosis factor ligand superfamily member 13B |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| NM_001124564.1 | True | 2081 | mRNA | 0.49 | 7 | 24774718 | 24778935 |
24,773,000
24,774,000
24,775,000
24,776,000
24,777,000
24,778,000
24,779,000
24,780,000
24,781,000
24,782,000
24,783,000
24,784,000
24,785,000
NC_048586.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110502073 | myo16 | coding | downstream | 18868 | 24519574 ~ 24755850 (-) |
| LOC110501998 | LOC106582131 | coding | downstream | 510431 | 24157993 ~ 24264287 (-) |
| naxd | LOC106582132 | coding | downstream | 626732 | 24141838 ~ 24147986 (-) |
| LOC110502019 | LOC106582134 | coding | downstream | 633121 | 24138664 ~ 24141597 (-) |
| LOC110502032 | NA | coding | downstream | 688987 | 24082096 ~ 24085731 (-) |
| LOC110501608 | LOC106582128 | coding | upstream | 470 | 24779405 ~ 24785002 (-) |
| LOC110501610 | LOC106582126 | coding | upstream | 320506 | 25099441 ~ 25149856 (-) |
| LOC110501612 | LOC107389858 | coding | upstream | 384254 | 25163189 ~ 25176805 (-) |
| LOC118943630 | NA | coding | upstream | 452326 | 25231261 ~ 25234195 (-) |
| LOC110501615 | LOC106582053 | coding | upstream | 494933 | 25273868 ~ 25278632 (-) |
| G1791855 | NA | non-coding | downstream | 213195 | 24561323 ~ 24561523 (-) |
| G1791788 | NA | non-coding | downstream | 325201 | 24449195 ~ 24449517 (-) |
| G1791474 | NA | non-coding | downstream | 404627 | 24369637 ~ 24370091 (-) |
| G1791242 | LOC106586666 | non-coding | downstream | 449985 | 24319442 ~ 24324733 (-) |
| G1792026 | NA | non-coding | upstream | 53329 | 24832264 ~ 24832586 (-) |
| G1792037 | NA | non-coding | upstream | 60288 | 24839223 ~ 24839788 (-) |
| G1792041 | LOC107663003 | non-coding | upstream | 64112 | 24843047 ~ 24843264 (-) |
| G1792347 | NA | non-coding | upstream | 82162 | 24861097 ~ 24861333 (-) |
| G1792354 | NA | non-coding | upstream | 96846 | 24875781 ~ 24876036 (-) |
| G1791405 | NA | other | downstream | 447591 | 24326729 ~ 24327127 (-) |
| LOC110501997 | LOC106582152 | other | downstream | 1314358 | 23368423 ~ 23460589 (-) |
| G1790280 | NA | other | downstream | 1605355 | 23164481 ~ 23169363 (-) |
| G1789581 | NA | other | downstream | 2355220 | 22418130 ~ 22419498 (-) |
| LOC110501594 | LOC106581696 | other | downstream | 2953773 | 21788428 ~ 21913721 (-) |
| G1792342 | LOC106582127 | other | upstream | 69656 | 24848591 ~ 24849752 (-) |
| G1792345 | NA | other | upstream | 77889 | 24856824 ~ 24857885 (-) |
| G1792433 | NA | other | upstream | 207024 | 24985959 ~ 24986268 (-) |
| LOC110501627 | LOC106582113 | other | upstream | 931638 | 25709599 ~ 25744218 (-) |
| G1794978 | NA | other | upstream | 2489727 | 27268662 ~ 27286095 (-) |
