tnfsf13b (tnfsf13b)


Basic Information

Item Value
gene id tnfsf13b
gene name tnfsf13b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24774718 ~ 24778935 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124564.1
CTTATACAACATTACAGTACAGGGTGcagacactgagacaggagagaagAAGGCAGGTCATGCAGCCtgtttgactacagaggaggCTGTCTGGGCCCTGTGATGGCATCTGCAGGTCCAAATCCCGAGGGTGGTAGACCTGCTTCCAGGCAGGAGTCTGGAGGTCGGAGGCTGTCCTGGCTGGTCCTGCTGCTGACTCTGGCAGCGGTcacctcctcgtctctctctgctctgtctctgtaCCACCTGCTGGCCCTTAGGGCCGAAGTTGAGGAGCTCCGGTCAGAGGTCTTCCGTAGGAGAGAGGAGCAACAAGAGGCTAGGCATGGAGAGACACTGCAGCAGATGAGCAGCAGAGCCAGAAGAAGCAGCCCAGACCATCCACACCCCCCTGACCCCCAGCCTGGGCTATCTTTCGTCAGGAAGAGGAGTGTGGGCACAGGAACTGAGAACTCAGTGTCTCAGCCTTGTCTACAGATGCTGGCAGATAGCAACAGGAAAACATTCCAGAAAGAGTTTGCGCTGGAGCCTTACACAGGGATCCCCTGGCAGGCGGGGCTTAGAAGAGGCTCCGCCCTGGAGGCAGAGAGCGACAGCATCCTGGTCAGAGAGGAGGGATACTACTTTGTCTACAGTCAGGTGTACTACATGGATACGACCTTTGCCATGGGTCATGTGGTGATCAGGAAGAAGAGGAACGTGGTGGGAGATGAAGCTCAGCATGTCACATTGTTCCGCTGTATCCAGAACATGAACCCTGTCTACCCATACAACACCTGTTACACAGGGGGTATAGTGAAGCTGGAGGTCGGGGACAGTGTGGAGCTGTTGATCCCTCGCTCTACAGCCAAAGTTTCTCTGGATGGAGACTCCACTTTCCTGGGCGCTGTCAGACTGGCCTGACCCTGACCAGGGGAGTTGGACTGGGGGGACTAGGAGATACAATTGCCATCATGTGGAAATGGACACTGCTGGTACTAGAAGTTTTGATCTGGTAGATACTGGTGGTGGTGTACAATAATTATTTTAAATGAACTATGGCTTCTGGGTCTGATAGCTACATTATCTATTCTACTATGATGCCATCTGCTTTACAGAGTGACTGAAGGACGGACGGACTCAGAATCATGGCCTATTACTGGAGAGCCTGGCTGATGATgccattgatgatgatgatgatgatgatagcaGTGTCAGCCTCTGTCACTGTGTGTGATCTGAAATGTTAGATGCTTATTCTGGCAGGTGTCTCACCATTCACTCATAAACTTCTTAAATGTTATGATCATATACAATACACACAGTCAAGACACAGTCCCAGCCATGACTACACAGTCCCAGCCATGACTACACAGCGCCAGCCATGACTACACTTTGATGCCTTGATGATCATTTTGACCACCTGCATACTAGTAAAATAGGCCCTGTTGTATTTCATGGTGTTGTATCCTGTCTATGACAATGTTATTGAATGGTGCAGAGTGAGTTGTCATCATTCTACCAGAAGGGAGCAGCAGCACTCAATTAATTGGTTTCCCAAGCAGCACCTGACCATGTGTTACAATAAATGCAGTTAATCACTATGGCTGGTGGTAATGATAGCGATATTATCCCATCCTGAGAGGGGGTTTGTTGTACACCTTGTGACCACCAGAGGGAAACCTTCCCACGGGAAACAGCActgtaacacagtacagtactggTGCTTCTATGGTGATTCTCCCTCAgattcagtgtttaatagtcacatgtacagggttgcagttGTGATTATCTTAGGCTTCAagctccaacatgcaggactaagtgaaataaaataactAAAATTGTAATAAAAAAAACTAGAAATAGCACTATATTATAGAGCTCCCGAGAGGCACAGCggttaaggcactgcatctcaatgcaagaggcgtcactacagtccctggttcaaatccaggctgtatcacatccggctgtgattgggagtcgcatagggcggcacacaattggcccagtgtcgtccggggtaggcagtcattgtaaataagaatttgttctgacttgcttagttaaataaataaaaaaatatatacata

Function

symbol description
tnfsf13b Predicted to enable receptor ligand activity. Involved in B cell homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Orthologous to human TNFSF13B (TNF superfamily member 13b).

NR:

description
tumor necrosis factor ligand superfamily member 13B

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005164 tumor necrosis factor receptor binding molecular_function

KEGG:

id description
K05476 TNFSF13B, TNFSF20, CD257; tumor necrosis factor ligand superfamily member 13B

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124564.1 True 2081 mRNA 0.49 7 24774718 24778935

Neighbor

gene id symbol gene type direction distance location
LOC110502073 myo16 coding downstream 18868 24519574 ~ 24755850 (-)
LOC110501998 LOC106582131 coding downstream 510431 24157993 ~ 24264287 (-)
naxd LOC106582132 coding downstream 626732 24141838 ~ 24147986 (-)
LOC110502019 LOC106582134 coding downstream 633121 24138664 ~ 24141597 (-)
LOC110502032 NA coding downstream 688987 24082096 ~ 24085731 (-)
LOC110501608 LOC106582128 coding upstream 470 24779405 ~ 24785002 (-)
LOC110501610 LOC106582126 coding upstream 320506 25099441 ~ 25149856 (-)
LOC110501612 LOC107389858 coding upstream 384254 25163189 ~ 25176805 (-)
LOC118943630 NA coding upstream 452326 25231261 ~ 25234195 (-)
LOC110501615 LOC106582053 coding upstream 494933 25273868 ~ 25278632 (-)
G1791855 NA non-coding downstream 213195 24561323 ~ 24561523 (-)
G1791788 NA non-coding downstream 325201 24449195 ~ 24449517 (-)
G1791474 NA non-coding downstream 404627 24369637 ~ 24370091 (-)
G1791242 LOC106586666 non-coding downstream 449985 24319442 ~ 24324733 (-)
G1792026 NA non-coding upstream 53329 24832264 ~ 24832586 (-)
G1792037 NA non-coding upstream 60288 24839223 ~ 24839788 (-)
G1792041 LOC107663003 non-coding upstream 64112 24843047 ~ 24843264 (-)
G1792347 NA non-coding upstream 82162 24861097 ~ 24861333 (-)
G1792354 NA non-coding upstream 96846 24875781 ~ 24876036 (-)
G1791405 NA other downstream 447591 24326729 ~ 24327127 (-)
LOC110501997 LOC106582152 other downstream 1314358 23368423 ~ 23460589 (-)
G1790280 NA other downstream 1605355 23164481 ~ 23169363 (-)
G1789581 NA other downstream 2355220 22418130 ~ 22419498 (-)
LOC110501594 LOC106581696 other downstream 2953773 21788428 ~ 21913721 (-)
G1792342 LOC106582127 other upstream 69656 24848591 ~ 24849752 (-)
G1792345 NA other upstream 77889 24856824 ~ 24857885 (-)
G1792433 NA other upstream 207024 24985959 ~ 24986268 (-)
LOC110501627 LOC106582113 other upstream 931638 25709599 ~ 25744218 (-)
G1794978 NA other upstream 2489727 27268662 ~ 27286095 (-)

Expression


Co-expression Network