LOC110501610 (LOC106582126)


Basic Information

Item Value
gene id LOC110501610
gene name LOC106582126
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25099441 ~ 25149856 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579294.2
ATGGATTTACAAACCCTGAACGAGACCTCTGTGTTCTTGGAGTGTGTGGAAGCGCAAGGCGCAGCGTCAAATGGAACGCCAAACTCCAGCCTGGAACTCACAAACATCACCACCTGTGGAAACGCTTACGTCGTCCTCAAACCGCAACATGTCAAACAGAAAGagGTGGACTCGCTGCGTATCCTGCTCTACTCGGTAATCTTCCTCCTCAGTGTGTTTGGCAACCTGCTAATCATTGTGGTCCTGACGGTCAACAAGCGCATGAGGACGGTCACCAACTCCTTCCTGCTGTCCCTGGCGGTCAGCGACCTGATGATGGCCATCTTCTGCATGCCCTTCACCCTCATACCCAACCTCCTGGAGGACTTCATCTTCGGGCCCACCATGTGCAAGATAGTGGCTTACCTCATGGGTGTTTCCGTGAGTATATCCACCTTCAGCCTGGTTGCCATAGCAATTGAGCGCTACAGCGCCATCTGCAACCCGCTAAAGTCACGGGCGTGGCAGACCCGTTCCCATGCCTACCGGGTGATTACTGCCACCTGGCTGCTGTCTTTCATGATCATGAGTCCCTACCCGGTGTTCAGCCACCTGGTCCATGTCCCCCTGAAGGACAACATCACCATCGCACGCATGTGTCGCCATATCTGGCCCCACAGGGAGGTGGAGCAGacctgGAATATGATGTTGCTGCTTACGCTCTTTGTTGTTCCGGGTGTGGTGATGATCGTAGCCTATGGACTTATCTCCAGAGAGCTGTACCGGGGAATCCAGTTTGAGCTGGGTCAGAAGACATCATCCCCCAGTCTAAAGAATGGCCTGACCGGCACCGTGTCTTGCGGCAGCGACGACGGCGATGGTTGCTACGTCCAGGTCTCCAAGCGTCCACACTCCATGGAGATGTCCACCCTGACATCATCTACTGCGAGCACATCCAAAGTGGAGCATGCCCGCAGCAACTCCTCAGAGGCCAAGCTCCTAGCCAAGAAGCGTGTGATCCGGATGCTGGTGGTAATCGTGGCTCTGTTCTTCCTGTGCTGGATGCCACTATACTGCGCCAACACCTGGAAGGCTTTCCACCCAGCCTCTGCCCGCCGTGCCCTCTCTGGTGCCCCCATCTCCTTCATCCACCTACTGTCCTACACCTCGGCCTGCGTTAACCCCATCATCTACTGCTTCATGAACACTCGCTTCCGCAAGTCGCTGCTTGCCACCTTTGCTTGCTGCTGTCGTCCTCCCTGCCGACGCCAAGGGCTgcgggatggagaggaggacgcAATGGCTTTGGGGGTGTCCATGTCCAAGTTTAGTTACACCACAGTCAGCACTATGGGGCGTGCTGAGGGAGGgaccactgactgactgggggACAGGGGAGACCAGAGAGATATGTGGTTATGTGATCGGTTTAGTCATTTCTATAGGGGAAAACATTAACCTGTGGTCATTAAGTATGGGGGAGATTAggtttgggcggtatccagattttcaaaCCTTCCTACCATTCCTGTACCATACCGGGGTACAAGTTATTACCGGCATTGCACACAAGGGGGGCTATTTATTTTCGAAAGCAAAAAACAACACcaacaaaacatttaaacaattcttattttttttactcaCAAAACAAATTTGGGCaggatccaggaggggattgacTTATTTAACATATAGTTATGAGCAGTGGCGTAGCATTTATATATTTACGGTATTCAAAATCATACTGTCGGAATTTCAAAATTCCCCCGGTATACCGCCCAAGGCTAGGGGAGATGCACCCACAGTCTATAGGGAAGTCAACACAAGACCATGACTGTAATGCTAATGTCAAGACCAATTGGCTCAGAGATGTATTATCTAGTTAAACTAACCTACTGTATGTCAATGGGTAGATCCAACCTGTAGTCCTTTAAAAAGGGAAAATACTCATGGCCTATGGAAAATGAATACCCAACATACCCAAAGGAAAAGGACAGTTATACACAGTTCAATAGTTGAAAAACAAAAGAAAATAATGGAAATATAATAGCACTGTTTTTCATTAGCATTTGTCCCAAGCGATGGAAAACAATGTTTCATTTAATGGTATGTAGCCTATGTAGTTATTTCGTTATCATCTGGGACTCATTAAAACAGCTTGCATTCATTTTTACTGTTGAACCCCTGATAGAGGATGGGAACTAACATCAGGGTAGAATAAAAGGGTTATGTGTTGGTATGGGGGTATATTCCTGAATGATACGCTATGAGGTTGAGGTGCAGTAGCTTGTGGAACAGGTATTAGTAATACCATTTGCAAAGTTTCTACTTATTTTCACGTTGCTTTGGGTTTTTACAATGCTGATGATGTGCTTATTATTAGTGTTGTCAATGTCCTGATGATGAGAAACTCTGTTGTGGACTATAAGTGCGTGCCTGCAAATGCTGATCTTTCTTCGAGTATCATCTGTTTGCTGTGCTGTGGACTATGTATTTCATGACGGACATTGTAAATACGGTGTTGCTACATCATGGTCTTAGCCAGACTGGATTGGATGTGGATTGGAGGCCAGACTCAACTGCGACCAAACCAACCCAACCTTACCGAAGACAGCAGCGATAATGAAAGTAAGTAAtgtggggtattagggaggtactgttactgtatatttaGGCTGTTAGTCTGGATCCAGCTCATTTGTCTCTTTTAGAGGTGCATCCTTGCTTTTTCAAAAACAGCTCGGTCTCTGCAGAAAACTGACGACACAACAACTTGTGTTGCATATCATTGATCTGCTGTGTACAGTGTATGTGCTCTGTTGCCATCTAAAGCGCCATGTTGTCCATGTATCCACTGcactgttggtgtgtgtgtttgtgttgctgcTAACAGGGTGTGTAAAGTTACTCAGCTGAGCAGGGGAAAGATTCAACAGACATTACTGATTGGCTTCAGCAACATCTAAACTGTCAAAAATGTCCTGTAATTCATACAGTAAAACACTGGCAGCACAGAAGCCTGTAGATTTACAGGACCTTTACTAAAATATCAATTTACAGCATATTACTGGAACACCTGACTACAGCCACATGCTGTATTTCTAGAATCTACAGTgtatatgtgacaataaaacatatacattgagtgtacaaaacattaatatggagttgcacccccttttgccctagGAACAGACTccattcgtcggggcatggactctacaaggtgtcaaa
>TU2051557
gaggacgcAATGGCTTTGGGGGTGTCCATGTCCAAGTTTAGTTACACCACAGTCAGCACTATGGGGCGTGCTGAGGGAGGgaccactgactgactgggggACAGGGGAGACCAGAGAGATATGTGGTTATGTGATCGGTTTAGTCATTTCTATAGGGGAAAACATTAACCTGTGGTCATTAAGTATGGGGGAGATTAggtttgggcggtatccagattttcaaaCCTTCCTACCATTCCTGTACCATACCGGGGTACAAGTTATTACCGGCATTGCACACAAGGGGGGCTATTTATTTTCGAAAGCAAAAAACAACACcaacaaaacatttaaacaattcttattttttttactcaCAAAACAAATTTGGGCaggatccaggaggggattgacTTATTTAACATATAGTTATGAGCAGTGGCGTAGCATTTATATATTTACGGTATTCAAAATCATACTGTCGGAATTTCAAAATTCCCCCGGTATACCGCCCAAGGCTAGGGGAGATGCACCCACAGTCTATAGGGAAGTCAACACAAGACCATGACTGTAATGCTAATGTCAAGACCAATTGGCTCAGAGATGTATTATCTAGTTAAACTAACCTACTGTATGTCAATGGGTAGATCCAACCTGTAGTCCTTTAAAAAGGGAAAATACTCATGGCCTATGGAAAATGAATACCCAACATACCCAAAGGAAAAGGACAGTTATACACAGTTCAATAGTTGAAAAACAAAAGAAAATAATGGAAATATAATAGCACTGTTTTTCATTAGCATTTGTCCCAAGCGATGGAAAACAATGTTTCATTTAATGGTATGTAGCCTATGTAGTTATTTCGTTATCATCTGGGACTCATTAAAACAGCTTGCATTCATTTTTACTGTTGAACCCCTGATAGAGGATGGGAACTAACATCAGGGTAGAATAAAAGGGTTATGTGTTGGTAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579294.2 False 3216 mRNA 0.47 5 25099441 25149856
TU2051557 True 953 lncRNA 0.40 1 25100435 25101387

Neighbor

gene id symbol gene type direction distance location
LOC110501608 LOC106582128 coding downstream 314439 24779405 ~ 24785002 (-)
tnfsf13b tnfsf13b coding downstream 320506 24774718 ~ 24778935 (-)
LOC110502073 myo16 coding downstream 343591 24519574 ~ 24755850 (-)
LOC110501998 LOC106582131 coding downstream 835154 24157993 ~ 24264287 (-)
naxd LOC106582132 coding downstream 951455 24141838 ~ 24147986 (-)
LOC110501612 LOC107389858 coding upstream 13333 25163189 ~ 25176805 (-)
LOC118943630 NA coding upstream 81405 25231261 ~ 25234195 (-)
LOC110501615 LOC106582053 coding upstream 124012 25273868 ~ 25278632 (-)
LOC110501616 LOC106582122 coding upstream 151963 25299369 ~ 25311767 (-)
gsk3ba LOC106586650 coding upstream 194820 25344651 ~ 25387478 (-)
G1792471 NA non-coding downstream 2879 25095492 ~ 25096562 (-)
G1792509 NA non-coding downstream 5290 25092268 ~ 25094151 (-)
G1792462 NA non-coding downstream 63650 25035327 ~ 25035791 (-)
G1792448 NA non-coding downstream 85743 25011600 ~ 25013698 (-)
G1792446 NA non-coding downstream 95494 25003723 ~ 25003947 (-)
G1792557 NA non-coding upstream 17567 25167423 ~ 25167652 (-)
G1792571 NA non-coding upstream 41301 25191157 ~ 25191361 (-)
G1792525 NA non-coding upstream 72009 25221865 ~ 25265798 (-)
G1792433 NA other downstream 113173 24985959 ~ 24986268 (-)
G1792345 NA other downstream 241556 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 249689 24848591 ~ 24849752 (-)
G1791405 NA other downstream 772314 24326729 ~ 24327127 (-)
LOC110501997 LOC106582152 other downstream 1639081 23368423 ~ 23460589 (-)
LOC110501627 LOC106582113 other upstream 560717 25709599 ~ 25744218 (-)
G1794978 NA other upstream 2118806 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 2591516 27741372 ~ 27770708 (-)
G1795850 NA other upstream 2830808 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 2859799 28009421 ~ 28019116 (-)
G1792514 NA non-coding upstream 4133 25105520 ~ 25105755 (-)
G1792530 NA non-coding upstream 28084 25129471 ~ 25130521 (-)
G1792531 NA non-coding upstream 33793 25135180 ~ 25135579 (-)

Expression


Co-expression Network