LOC110501612 (LOC107389858)


Basic Information

Item Value
gene id LOC110501612
gene name LOC107389858
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25163189 ~ 25176805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959587.1
atgttgaggatcagcgtggtggaagGGTTATTGCCGACCATCACCAGTTGGGGTCAGCCcGAGCGGATTGAATACTCCAAGACATTCCAGGGGAAATACTTCAACTTCCTGGGTTATTTCTTCTCCATCTACTGTGTGTAGAAAATCTTTATGGCCACCATTAACATTGTGCTTGACTGTGTTGGGAAGACTGATCCAGTGATTAGAGGGATTGAGATCACTGTTAACTACCTAGGCATTCAGTTTGATTTAAAGATCTGGTCTCAGCACATCTCCTTCATCCTGGTGGGCATCATCATCGTCACTTCTATTAGAGGCCTTCTCATCACACTCACCAAGTTCTTCTATGCCATCTCCAGCAGCAAGTCCTCCAATGTTATAGTGCTGGTCCTAGCTCAAATCATGGGGATGTACTTTGTCTCGCCCGTTCTCCTCATGAGGATGAGCATGCCTCTAGAGTATCGCTCTATCGTGACCGAGGTGCTGGGCGAGTTGCAGTTCAACTTCTACCACCGATGGTTCGACGTCATCTTTCTCGTCCGTGCCCTCTCCAGCATCCTTTTCCTCTACCTCGCCCACAAACAGGCTCCCGAGAAGCACATGACCCCCTGACCCCACTTTGAACTTGACCCTTTACCTGGAAGCTCAGCTGGCGTCCAGATCTGAACTTTGAGTCTGTGGGATTTAGATTTTCTCTTTTTAAATCTCTGGTCCGTCTGTGTGGTGGCGAGAAGAAGACGTTTTGCCTGTGTTTCCTGAATCAGGAAGGGCCGACGCTTGGCCATGTGGACCATTGGTGTCGGGGGGATTCAATGGAGGGGAATTGGTGCCATGGAACGCTGGACTAATGTTGGGGTGAACGTGGGGGTGGAATGACTAAAACAATGTGGATGTGTCATCGTGCTGTTGAGCCGTTGGACACAGGTTCTGTCTAGCCTTAAATGAATCTGACCACAGGAGAACTGCATAGTATACAGCACAGACCAGCTTCACTGCAAACACTAGCTTTGTTGTATGAATGGATTGTAAAGACCATCACTACCTGAAGTGTACACTCTATTTTTGATAAACAGAATACTCAAAATTAAAGAAGAAATGTATCCCCAATGTCCATGATGCTATTTGCTAGCATCATTCATTGTGTCCAGTCTGTACATGTACCTAGGGTTGTTTGTTGGTGTATGTGTGCgaatatctactgtactctactgtgctttcACACAGGTGGGAAAGCTACAGAATAAACCAATTTATGTGGTTATTAGTTACTCCGTTCCCTTTCTTTTAAGTACTGCAATGCCACTACATTTACCAGTTAAACAGAGAATAAGTGAATAGTG
>TU2051651
CTTCACATACAGTCAGTTTATCATATCCACATCAGGCCCCAAAACCATATCTGTAGTAACCCTGTTTTTTGTCCCTCTAAGGCCACCATTAACATTGTGCTTGACTGTGTTGGGAAGACTGATCCAGTGATTAGAGGGATTGAGATCACTGTTAACTACCTAGGCATTCAGTTTGATTTAAAGATCTGGTCTCAGCACATCTCCTTCATCCTGGTGGGCATCATCATCGTCACTTCTATTAGAGGCCTTCTCATCACACTCACCAAGGTAAGCCAACTACAGACAGGAAGTAGTCAGTCTACCGAGGCATGTTATGATGTATCCTAACACTGATCTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959587.1 False 1340 mRNA 0.46 6 25163189 25176805
TU2051651 True 337 lncRNA 0.43 2 25164363 25164879

Neighbor

gene id symbol gene type direction distance location
LOC110501610 LOC106582126 coding downstream 13333 25099441 ~ 25149856 (-)
LOC110501608 LOC106582128 coding downstream 378187 24779405 ~ 24785002 (-)
tnfsf13b tnfsf13b coding downstream 384254 24774718 ~ 24778935 (-)
LOC110502073 myo16 coding downstream 407339 24519574 ~ 24755850 (-)
LOC110501998 LOC106582131 coding downstream 898902 24157993 ~ 24264287 (-)
LOC118943630 NA coding upstream 54456 25231261 ~ 25234195 (-)
LOC110501615 LOC106582053 coding upstream 97063 25273868 ~ 25278632 (-)
LOC110501616 LOC106582122 coding upstream 125014 25299369 ~ 25311767 (-)
gsk3ba LOC106586650 coding upstream 167871 25344651 ~ 25387478 (-)
LOC110501620 gpr156 coding upstream 212969 25389774 ~ 25416340 (-)
G1792531 NA non-coding downstream 27610 25135180 ~ 25135579 (-)
G1792530 NA non-coding downstream 32668 25129471 ~ 25130521 (-)
G1792514 NA non-coding downstream 57434 25105520 ~ 25105755 (-)
G1792471 NA non-coding downstream 66627 25095492 ~ 25096562 (-)
G1792571 NA non-coding upstream 14352 25191157 ~ 25191361 (-)
G1792525 NA non-coding upstream 45060 25221865 ~ 25265798 (-)
G1792801 NA non-coding upstream 135011 25311816 ~ 25312063 (-)
G1792433 NA other downstream 176921 24985959 ~ 24986268 (-)
G1792345 NA other downstream 305304 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 313437 24848591 ~ 24849752 (-)
G1791405 NA other downstream 836062 24326729 ~ 24327127 (-)
LOC110501997 LOC106582152 other downstream 1702829 23368423 ~ 23460589 (-)
LOC110501627 LOC106582113 other upstream 533768 25709599 ~ 25744218 (-)
G1794978 NA other upstream 2091857 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 2564567 27741372 ~ 27770708 (-)
G1795850 NA other upstream 2803859 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 2832850 28009421 ~ 28019116 (-)
G1792557 NA non-coding upstream 2544 25167423 ~ 25167652 (-)

Expression


Co-expression Network