LOC118943630


Basic Information

Item Value
gene id LOC118943630
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25231261 ~ 25234195 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038964.1
AAGAAAGGTAGCAGCTAATGGTGATCCttaacaaatacaaatacaaggctcgggagagggAAAGATCAAGTCATGCGTCCCCAGAAACATGATGTGACAACacccgctcgcttaacccagaagccagctgcaccaatgtgtcggaggaaacatcgtTCATCCACAACAAGCCACAAACATCGCCCGGCCAGCCACAAGgtgtcgctagagcgcaatgagccaagtgAAGCCCCCCAACCGCCAAACCCgcccctaacccggaagacgctgggccaattgtgcaccaccctatatGACTCCCGGTTACGGCCAGTTGTGACaaagcctgggatcgaaccacaggctgtagtgatgccgcaacactgcgatgcagtgtcttagacggCTAtgtcactcgggaggcccagcACAGACCTTTTTTTATTTGCCTGTGCTACAAATGCCTATATCAGTCTGCtaataaaggactagtaaaggtccagtgcactacttttgcagaaaaaaataatgtaaaaaatcTTTGTTATTATTTGTGAATTTgtgatttttcagggggtgctgcatcACCCTCCGCACACCTACTTCCCACGGCTGTGATGTGTTGTGTACATCTGCAGGATGTTTATACTTATGACTGCCTCTGTTTGCAGAAACATCTCAGGATACAGAAGTGGAACTGAGTGAGCTGAGAATACAGGAAGCTGATGTAGATCAACAAAGCAGTATTTGTGACTCTATATGACCTGATGATGTGATCAAATTGACAAAATCATATCAGCTGTGTAACATCTCTTTGTCTGCCCTTGAATAATATCTATTGAGGCAGAACGTTTAATGTGAAATGTATATCAACTGTAGCTGTTGAACACAACTTGGTTGCTTGCGTAAATTAATACAGTCAAGAATGGAGAACTGCCTCAGTAATTTATTGATCAGAAGATGGCGGTATTGTAACACACTGAAAGTAGCTAAAGAAAATGGTTGCAACTGTTAATGAACTCTGATAGTGACTGAATGGAAAGCATTAGTCATCAGGTGAATGTTTCTTACCACAGGTGATGCTATACTATGTTTGCTGTACTAAGTTTGTCCACGTCCATGTTATGTTAAAGACATCCTccaaagatttttttttacttctgCTGTTGAAAAGCAACATTCCAAGTATAAATATAGTAAATTACACACATCACAAAgggtaaaaaaaagtgtttttttagACACATCTGCAAACTTCAAGAAGTAGGGATTCAAGGAGCTGTTCTGATGGTCAGGTTCCCTCTTGCTTGACGCACAATAGAAGAGCAATAGAGAACCAAAGAGGACCCACCGTGGTCTGACCACATCCTGCTggtcctctgtctcctcttcctgGTCTGACCACGGTTGGTTTGCTCTAACTGAGTGACACGAGCACTGAAGCTCATTGTCATTTAAAGCACCTATagctataatatactgtaacccaCTGGACCTCATCatcgttagtcagcacctctacactaaATCATATTCTCTTGGTGTGCGCCAGCTCAGGTTTTTATTAGACCCATTTAATACTGAAAACTTTTATTGTGTACAAGGTTGAAATACAGCAAACATGTCACTTTAACTTTCTAAAATATCCACATTATTCAGGACAAAGAAGGTCAACAAATAACGGCATAAAGGAGCAGGCAGCACCATGTCCagacctctcctcctgctctaaGGGAACCTTTCCATCATCACCATTCACACCAAACCCTGCCCACTCCGACAATCTCTACAACAATGGTCCCTATGCCAAACACATCAACAGGGCATCGGCACACAGCCTCCTGATGACAAACGGAACTCTGCCTTCCTCGGATATCACAGCTGGAGGTCAAGGGTCAAACCACCAGACCCCTAGAGAGTCCCCAAACCTCCCCATATCCCAACCCCCAGGATGAATGCTCAGAGAACGCAGCCATCTGAGTCCATTGAGCCCATCGGCTCTGAAAGAGACCTCATCCAGACCATAACGGCAGAGTGCTGCTGACTGTTTAAGTTGTCTTCTTTGTTGGATCTTCTCACTGAAAAAGAGGAAAGCTGAACATATTTTGTGGATGAAAATGTTACTCCTTGGgggattcatgtttttttttatatatatgtaactcacacacactcttcctgGTGTCATGGAAATGTTGAGCAGTGTGTTAACCGCAGTGCAGCAGTATTTCAGagaataaaatgtgatttaaagATGGGGGGGGATCGTGGTGAGACAGGTGGGCAAGGGTTAGAGCTAGAGAATATGTGCTTCTGAGTGTGAACCTTCCTTCACGTCACACCTCAGAGTTAGAGGAGCAAAATAATACCTGTTAGCAGTGTGTATCACAAAGGTTATCTCACACGTGATGATGATAAACCATCATTTGTTATTGactatcaaaatatatattttaatgaagaAACCACTGAGACACTTTGGTGATTATTAGTGATGATTTGGGGCTATAACAGGGAAAAATAACTCATACCGAACATTTTATGTCCCTGTGTGTGACTaagtgtgtgtgcgcctgtgtctATATGTCTGTATATGACTTACTCagtatgagtgagtgagtgagtgagtgagtgag

Function

NR:

description
B- and T-lymphocyte attenuator-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038964.1 True 2615 mRNA 0.43 3 25231261 25234195

Neighbor

gene id symbol gene type direction distance location
LOC110501612 LOC107389858 coding downstream 54456 25163189 ~ 25176805 (-)
LOC110501610 LOC106582126 coding downstream 81405 25099441 ~ 25149856 (-)
LOC110501608 LOC106582128 coding downstream 446259 24779405 ~ 24785002 (-)
tnfsf13b tnfsf13b coding downstream 452326 24774718 ~ 24778935 (-)
LOC110502073 myo16 coding downstream 475411 24519574 ~ 24755850 (-)
LOC110501615 LOC106582053 coding upstream 39673 25273868 ~ 25278632 (-)
LOC110501616 LOC106582122 coding upstream 67624 25299369 ~ 25311767 (-)
gsk3ba LOC106586650 coding upstream 110481 25344651 ~ 25387478 (-)
LOC110501620 gpr156 coding upstream 155579 25389774 ~ 25416340 (-)
LOC110501621 gpr156 coding upstream 161855 25396050 ~ 25400976 (-)
G1792571 NA non-coding downstream 39900 25191157 ~ 25191361 (-)
G1792557 NA non-coding downstream 63609 25167423 ~ 25167652 (-)
G1792531 NA non-coding downstream 95682 25135180 ~ 25135579 (-)
G1792530 NA non-coding downstream 100740 25129471 ~ 25130521 (-)
G1792801 NA non-coding upstream 77621 25311816 ~ 25312063 (-)
G1793311 NA non-coding upstream 414306 25648501 ~ 25649291 (-)
G1793339 NA non-coding upstream 441868 25676063 ~ 25676470 (-)
G1792433 NA other downstream 244993 24985959 ~ 24986268 (-)
G1792345 NA other downstream 373376 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 381509 24848591 ~ 24849752 (-)
G1791405 NA other downstream 904134 24326729 ~ 24327127 (-)
LOC110501997 LOC106582152 other downstream 1770901 23368423 ~ 23460589 (-)
LOC110501627 LOC106582113 other upstream 476378 25709599 ~ 25744218 (-)
G1794978 NA other upstream 2034467 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 2507177 27741372 ~ 27770708 (-)
G1795850 NA other upstream 2746469 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 2775460 28009421 ~ 28019116 (-)

Expression


Co-expression Network