LOC110501615 (LOC106582053)


Basic Information

Item Value
gene id LOC110501615
gene name LOC106582053
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25273868 ~ 25278632 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579307.2
tatactgtaaccCACTAAAAATACATATACGTGTTGGCCTACGATGTGTGAGGGAGAGGAAACAGACCTCTAAAGTAGAAGCAATAGACAAGAGAGCTATGGTAGGTAGGCTCATATGTAGGAGGACAGGAAGTGGAAAAACCCTGTAGAtgcagaggagatagagagaaagagagagagagagagagagagagagagagagagagagagaaatattcaGAACATATCGTCAGTGTCACCACTCAACTCACGTGTGTAATCACAGGCGGTTTGCTCTAACTGAGTGACACGGGCATGACCTGTCTTGAGATCTCATAAGACATTGCATCTTTGCCCTGATGGACCCACTGTGGTCTGACCACATCCTGCTggtcctctgtctcctcttcctgGTCTGCATCAATGGCAATGCTCAAGGCCCATGTGAAATTGAGGTGCCAATCAAAAGAAACACTGTTTGGAATGCTGTCCCTCAGAAACGGCTGACAATCAACTGCCCTGTAAAACATTGTGGGGAAACCTTACGTGTCACCTGGTGTAAATTTGAGGACGCCAACTGCAAACAAATCAATGAGACAGAGCAAGTCAAAATTGGATGGAAACCATTTGATAGAGGGTCAGAAAATCGTATTGCATTTTTGGATTTTAAGAAGATATCTAGGAATGACGATGGTTCGTACAGATGTGGAATGGCTGGGAAAAAATCATCAATTGTTAGCCATGCTATCAATGTCTCTGTCTCAGATATCAACCTGACAATGACTAGCACAGCAGACCACAACACAAACAACTCACCAAATGCAAAGCATGATGAGAAATATCTGAGCTGGCTGCCGTATGCTTACATCTGTGTGGGAATAGTACTGCTGGTGGTCGTGGTGACACCAATCTCCTTCTTCTATCTTTATGGATGTAAAGGACCAACAAGGTCAACAAATAACGGCATAAAGGAGCAGGCAGCACCATGTCCagacctctcctcctgctctaaGGGAACCTTTGCATTATCACCATTCACACCAAACCCTGCCCACTCTGACAATCTATACAACAATGGTCCCCATGCCAAACACATCAACAGGGCATCGGCACACAGCCTCCTGATGACAAACGGAACtctgccttcctctgacatcacagCTGGAGGTCAAGGGTCAAACCACCTTGTGTACGCTAGCCTGAACCACCAGACCCCTAGAGGGTCCCCGAAACCCCCCCATATTCCAACCCCCCATGACGAATGCTCAGAGTATGCAGCCATCCGAGTCCACTGAGCCCATAGGCTCTGAAAGAGACCTCATCCAGACCATAACGGCAGAGTGCTgctgactgttttactgtttaaGTTGTCTTCTTTGTTGGATCTTCTCACTGAAAAAGAGGAAAGCTGAACATATTTTGTGGATGAAAATGTCACTCCTTGGGGGATTCATGTTTTTTTATACATATATAAAACTAACACACACTCTTCCTGGTGTCATGGAAATGTTGAGCAGTGTGTTAACCGCAGTGCAGCAGTATTTCAGagaataaaatgtgatttaaagATGGGGGGGGATCGTGGTGAGACAGGTGGGCAAGGGTTAGAGCTAGAGAATATGTGCTTCTGAGTGTGAACCTTCCTTCACGTCACACCTCAGAGTTAGAGGAGCAAAATAACACCTGTTAGCAGTGTGTATCACAAAGGTTATCTCACACATGATGATGATAAACCATCATTTGTTATTGactatcaaaatatatattttaatgaagaAACCACTGAGACACTTTGGTGATTATTAGTGATGATTTGGGGATATAACAGGGAAAAATAACTCATACCGAACATTTTATGTCCCTGTGTGTGActaagtgtgtgtgcctgtgtctatATGTCTGCATATGACTCACTCAgtatgagtgagtgaatgagtgagtgagtgagcgagcgagcaAGTGAGTGTTGGTGTATATTTTTGCACAGATGCGCGTGTTTGTACGCATGTGCTGGCTACAGGTTGGGGGCTTTCCATGGTTTATGTAAAATGTTGAGCCCACCACATAGCCGAAACAGTGAGTTGCTGTAAATAGATGTTCTCCCTCTTGAGAGTGTATGGAAATTCCATTCAAATGTTATATGAATGTAATATGAAAGTGCATATGACTTTCTCTATGGTCATAGGAAGACAGAGGTAATAGTTTGCATAACTGTAAAATGATGTGGGCGTGGCAAGATTGTAATAGTGACACATACAGTAACAAATTCCAATCTCAGTTATTGTCAATTAATTTGAAACATGTTCGTTTGAAGGCTACATGTTTACTATGCAACTACTCAATTACAATACAGTATCCTTCAACAGAGAATAGTGCCAGAGAAATGTCCATCATTTTATAAAGAAATTGCGACAAAGACCATTGTTACCACTTGAAGCAAGAGTGGCTAGTTTTTGAGAATACAAAATAAAGCTTGGGTCTAATATC

Function

NR:

description
B- and T-lymphocyte attenuator-like

GO: NA

KEGG:

id description
K06707 BTLA, CD272; B- and T-lymphocyte attenuator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579307.2 True 2466 mRNA 0.43 6 25273868 25278632

Neighbor

gene id symbol gene type direction distance location
LOC118943630 NA coding downstream 39673 25231261 ~ 25234195 (-)
LOC110501612 LOC107389858 coding downstream 97063 25163189 ~ 25176805 (-)
LOC110501610 LOC106582126 coding downstream 124012 25099441 ~ 25149856 (-)
LOC110501608 LOC106582128 coding downstream 488866 24779405 ~ 24785002 (-)
tnfsf13b tnfsf13b coding downstream 494933 24774718 ~ 24778935 (-)
LOC110501616 LOC106582122 coding upstream 23187 25299369 ~ 25311767 (-)
gsk3ba LOC106586650 coding upstream 66044 25344651 ~ 25387478 (-)
LOC110501620 gpr156 coding upstream 111142 25389774 ~ 25416340 (-)
LOC110501621 gpr156 coding upstream 117418 25396050 ~ 25400976 (-)
LOC110501622 lrrc58 coding upstream 146740 25425372 ~ 25444103 (-)
G1792525 NA non-coding downstream 8070 25221865 ~ 25265798 (-)
G1792571 NA non-coding downstream 82507 25191157 ~ 25191361 (-)
G1792557 NA non-coding downstream 106216 25167423 ~ 25167652 (-)
G1792531 NA non-coding downstream 138289 25135180 ~ 25135579 (-)
G1792801 NA non-coding upstream 33184 25311816 ~ 25312063 (-)
G1793311 NA non-coding upstream 369869 25648501 ~ 25649291 (-)
G1793339 NA non-coding upstream 397431 25676063 ~ 25676470 (-)
G1792433 NA other downstream 287600 24985959 ~ 24986268 (-)
G1792345 NA other downstream 415983 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 424116 24848591 ~ 24849752 (-)
G1791405 NA other downstream 946741 24326729 ~ 24327127 (-)
LOC110501997 LOC106582152 other downstream 1813508 23368423 ~ 23460589 (-)
LOC110501627 LOC106582113 other upstream 431941 25709599 ~ 25744218 (-)
G1794978 NA other upstream 1990030 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 2462740 27741372 ~ 27770708 (-)
G1795850 NA other upstream 2702032 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 2731023 28009421 ~ 28019116 (-)

Expression


Co-expression Network