LOC110501616 (LOC106582122)


Basic Information

Item Value
gene id LOC110501616
gene name LOC106582122
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25299369 ~ 25311767 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579308.2
ttttttttggggggggggggcaggtggaACGAGCAGCAGTGTCTTGAGGAGTACATGAGTATTGTCAGGAGCCATATAGAACAaccagagagatggggaagacaTGGATTATAGGAGTCATCTCTCTCCTGGCTGTTTCTGCAACCTGGAGCTTAGAAACAGGATATAACCACAACATTTCTGTGATCTCTCACACTTCCCCTTTCCTCACCTCCACTGCGCCTCTAGGCCTACAACACGGAGTCATTGCTGCCAGGAGTGAACATTTCCACCTGGGGAATAATGCCATCTTAAAGTGCAGCAATAAGACTTGGAGTGAGATGATCTACACCATCTGGAAAATACAACTGGGTGGAATAAAGTGTCAAATATCATCTAGTAATGATAACCAAAATCTGAACACATGCAATGATGGAAAAGCAATGCTCAACACATCCAGGGGTGAATCCTACCTGCAGATTCCAGGGTTCTCAAAGAGAGATGAAGGAATCTACCACTGTGAGTCAGCGTACAAAGCAGGAATCTACGCCGCAAACATTGATGTATCACTAATAGCCCCTCCCAATGTGTTTGCCTGGCTAGAGTGGGAGGGCAGTAGGCAGGTGGCTGTGTGTTTGGCTGAAGGGGGGAAACCAGCTGCCTCCATCTCCTGGAGTGAAAACTGGAACTCTACTTCAACCACCACATTGAACCTAGATGGCTTCAACAAAGTAGAGAGTCGATTGGTCCTGCCTGAGGGGATTGCTACGGGCAACCTGACTTGTGCTGTCACACATCCCTCCTGGGAAGAGGTGCATATGGTGACACCAGGAATCGTCATACCCTGGCGATTAGTCATAATCTCAGTGGGAACTATAAGCTTCATCATGGTTATTCTGGGGGGTTTATACTTCACACGAAAACACCCCTGCAGAATTAGCCCCAAGGCTCCTCAGtCACAGGACTATGTGGAGGAAGTAGAACCCTACGCCAGCTATGTACAAAGTGCCAATTTAATCTACAACTCCTCTGCAGGCCtgttcacataacacacacacacctctgcatgCCACGCTGCGAACTTTGAGGTTGAAGAAACTGATCCAGTAAACAGGGGAATGATGGAGGACATGACACAGGGCTTCTGTTACAAAAGGATAACCTCACAGATCTGATCACTCCTGACTGACGTGAGAAAATGGCAAAAAACAGACATTTCTACAACCGAAGAGATGTGGGCAGATGAGAGATGATCTTTCCAGTTTAACGTTTTCACAATTTGCACAATGAGAACTATGACTTGCTGTGTAGTCAGCACAACTGTATACCACTGCTCTCATAACACACGTTTGACTGTTCCCACACTCCTGCCATCTGCAAATCATGGGGAAGAGTGCAATTTTGATTTTAATCAAAATCTCAATTTATATAATACTGATGTGTAATTACagtgtttttgttgagtttatatttatgATTGAATTTAAATATCAAGTTTGTTATATAATAAAAACAGATTCTTTACATTTGAAACCTACATCCAGAGTTAATGGGGAAAGGATTTGAAGCACACACAACATTCTCTGTGGTTACATTCATGAGACAAGAGTTTGACTCTGAGAACTAAGATAACAACTAAACTTTTGAGTCGGAAAACGTGTGTTTGCAGTGGTGGAAGTACTCAAATGTAATAAAACTAAAGAGTAAAActgaagataccttaatagaaaacgactcaagtaaaagtgaaagccacccagtgtcacgttctgacctttatttcctttgttttgtcattatttagtatggtcagggcatgagttg
>XM_021579309.2
ttttttttggggggggggggcaggtggaACGAGCAGCAGTGTCTTGAGGAGTACATGAGTATTGTCAGGAGCCATATAGAACAaccagagagatggggaagacaTGGATTATAGGAGTCATCTCTCTCCTGGCTGTTTCTGCAACCTGGAGCTTAGAAACAGCTGCCAGGAGTGAACATTTCCACCTGGGGAATAATGCCATCTTAAAGTGCAGCAATAAGACTTGGAGTGAGATGATCTACACCATCTGGAAAATACAACTGGGTGGAATAAAGTGTCAAATATCATCTAGTAATGATAACCAAAATCTGAACACATGCAATGATGGAAAAGCAATGCTCAACACATCCAGGGGTGAATCCTACCTGCAGATTCCAGGGTTCTCAAAGAGAGATGAAGGAATCTACCACTGTGAGTCAGCGTACAAAGCAGGAATCTACGCCGCAAACATTGATGTATCACTAATAGCCCCTCCCAATGTGTTTGCCTGGCTAGAGTGGGAGGGCAGTAGGCAGGTGGCTGTGTGTTTGGCTGAAGGGGGGAAACCAGCTGCCTCCATCTCCTGGAGTGAAAACTGGAACTCTACTTCAACCACCACATTGAACCTAGATGGCTTCAACAAAGTAGAGAGTCGATTGGTCCTGCCTGAGGGGATTGCTACGGGCAACCTGACTTGTGCTGTCACACATCCCTCCTGGGAAGAGGTGCATATGGTGACACCAGGAATCGTCATACCCTGGCGATTAGTCATAATCTCAGTGGGAACTATAAGCTTCATCATGGTTATTCTGGGGGGTTTATACTTCACACGAAAACACCCCTGCAGAATTAGCCCCAAGGCTCCTCAGtCACAGGACTATGTGGAGGAAGTAGAACCCTACGCCAGCTATGTACAAAGTGCCAATTTAATCTACAACTCCTCTGCAGGCCtgttcacataacacacacacacctctgcatgCCACGCTGCGAACTTTGAGGTTGAAGAAACTGATCCAGTAAACAGGGGAATGATGGAGGACATGACACAGGGCTTCTGTTACAAAAGGATAACCTCACAGATCTGATCACTCCTGACTGACGTGAGAAAATGGCAAAAAACAGACATTTCTACAACCGAAGAGATGTGGGCAGATGAGAGATGATCTTTCCAGTTTAACGTTTTCACAATTTGCACAATGAGAACTATGACTTGCTGTGTAGTCAGCACAACTGTATACCACTGCTCTCATAACACACGTTTGACTGTTCCCACACTCCTGCCATCTGCAAATCATGGGGAAGAGTGCAATTTTGATTTTAATCAAAATCTCAATTTATATAATACTGATGTGTAATTACagtgtttttgttgagtttatatttatgATTGAATTTAAATATCAAGTTTGTTATATAATAAAAACAGATTCTTTACATTTGAAACCTACATCCAGAGTTAATGGGGAAAGGATTTGAAGCACACACAACATTCTCTGTGGTTACATTCATGAGACAAGAGTTTGACTCTGAGAACTAAGATAACAACTAAACTTTTGAGTCGGAAAACGTGTGTTTGCAGTGGTGGAAGTACTCAAATGTAATAAAACTAAAGAGTAAAActgaagataccttaatagaaaacgactcaagtaaaagtgaaagccacccagtgtcacgttctgacctttatttcctttgttttgtcattatttagtatggtcagggcatgagttg
>TU2051927
ggggcaggtggaACGAGCAGCAGTGTCTTGAGGAGTACATGAGTATTGTCAGGAGCCATATAGAACAaccagagagatggggaagacaTGGATTATAGGAGTCATCTCTCTCCTGGCTGTTTCTGCAACCTGGAGCTTAGAAACAGGAATCGTCATACCCTGGCGATTAGTCATAATCTCAGTGGGAACTATAAGCTTCATCATGGTTATTCTGGGGGGTTTATACTTCACACGAAAACACCCCTGCAGAATTAGCCCCAAGGCTCCTCAGtCACAGGACTATGTGGAGGAAGTAGAACCCTACGCCAGCTATGTACAAAGTGCCAATTTAATCTACAACTCCTCTGCAGGCCtgttcacataacacacacacacctctgcatgCCACGCTGCGAACTTTGAGGTTGAAGAAACTGATCCAGTAAACAGGGGAATGATGGAGGACATGACACAGGGCTTCTGTTACAAAAGGATAACCTCACAGATCTGATCACTCCTGACTGACGTGAGAAAATGGCAAAAAACAGACATTTCTACAACCGAAGAGATGTGGGCAGATGAGAGATGATCTTTCCAGTTTAACGTTTTCACAATTTGCACAATGAGAACTATGACTTGCTGTGTAGTCAGCACAACTGTATACCACTGCTCTCATAACACACGTTTGACTGTTCCCACACTCCTGCCATCTGCAAATCATGGGGAAGAGTGCAATTTTGATTTTAATCAAAATCTCAATTTATATAATACTGATGTGTAATTACagtgtttttgttgagtttatatttatgATTGAATTTAAATATCAAGTTTGTTATATAATAAAAACAGATTCTTTACATTTGAAACCTACATCCAGAGTTAATGGGGAAAGGATTTGAAGCACACACAACATTCTCTGTGGTTACATTCATGAGACAAGAGTTTGACTCTGAGAACTAAGATAACAACTAAACTTTTGAGTCGGAAAACGTGTGTTTGCAGTGGTGGAAGTACTCAAATGTAATAAAACTAAAGAGTAAAActgaagataccttaatagaaaacgactcaagtaaaagtgaaagccacccagtgtcacgttctgacctttatttcctttgttttgtcattatttagtatggtcagggcatgagttggggtgggcagtctatgtttgtttttctatgatttgggtatttctatgtttcggcctagtatggttctcaatcagaggcaggtgtcattagttgtctctgattgagaatcatacttaggtagcctgggtttcactgtgtgtttgtgggtgattgttcctgtctctgtgtttgcaccagatagggctgttttaggttttcttgtttttgttagtctgttcatgtatagttttcttcattaaagaaccatgaatagaaaccacgctgctttttgctccgcctctccttcacctcaagaaaac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579308.2 False 1803 mRNA 0.43 7 25301819 25311767
XM_021579309.2 False 1716 mRNA 0.43 6 25301819 25311767
TU2051927 True 1438 lncRNA 0.41 5 25299369 25311751

Neighbor

gene id symbol gene type direction distance location
LOC110501615 LOC106582053 coding downstream 23187 25273868 ~ 25278632 (-)
LOC118943630 NA coding downstream 67624 25231261 ~ 25234195 (-)
LOC110501612 LOC107389858 coding downstream 125014 25163189 ~ 25176805 (-)
LOC110501610 LOC106582126 coding downstream 151963 25099441 ~ 25149856 (-)
LOC110501608 LOC106582128 coding downstream 516817 24779405 ~ 24785002 (-)
gsk3ba LOC106586650 coding upstream 32909 25344651 ~ 25387478 (-)
LOC110501620 gpr156 coding upstream 78007 25389774 ~ 25416340 (-)
LOC110501621 gpr156 coding upstream 84283 25396050 ~ 25400976 (-)
LOC110501622 lrrc58 coding upstream 113605 25425372 ~ 25444103 (-)
LOC110501623 fstl1 coding upstream 133309 25445076 ~ 25503851 (-)
G1792525 NA non-coding downstream 36021 25221865 ~ 25265798 (-)
G1792571 NA non-coding downstream 110458 25191157 ~ 25191361 (-)
G1792557 NA non-coding downstream 134167 25167423 ~ 25167652 (-)
G1792531 NA non-coding downstream 166240 25135180 ~ 25135579 (-)
G1792801 NA non-coding upstream 49 25311816 ~ 25312063 (-)
G1793311 NA non-coding upstream 336734 25648501 ~ 25649291 (-)
G1793339 NA non-coding upstream 364296 25676063 ~ 25676470 (-)
LOC110501627 LOC106582113 non-coding upstream 397869 25709599 ~ 25744218 (-)
G1792433 NA other downstream 315551 24985959 ~ 24986268 (-)
G1792345 NA other downstream 443934 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 452067 24848591 ~ 24849752 (-)
G1791405 NA other downstream 974692 24326729 ~ 24327127 (-)
LOC110501997 LOC106582152 other downstream 1841459 23368423 ~ 23460589 (-)
G1794978 NA other upstream 1956895 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 2429605 27741372 ~ 27770708 (-)
G1795850 NA other upstream 2668897 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 2697888 28009421 ~ 28019116 (-)

Expression


Co-expression Network