LOC110501622 (lrrc58)


Basic Information

Item Value
gene id LOC110501622
gene name lrrc58
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25425372 ~ 25444103 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579316.2
GTATCCCCAATGCAATTATAAGGtctaatacatccacagtttgtATTTTTGTAAAATTAACTAACACTTGTCTTTTAACATTACAACCTTGTTTGACATGATCTAGTGCAAATGTGGCGTGCTTCCACTTTTTTCCTCCGTTTGCATCAGTTTCAACGGCGACTTTTACTTTGAAGGCAATTCCACTACTGTCGCTCACGGTAATGTTGTTCATGACACCCACATGCAACTCGGGCCATTGGCATTGGACTCCTCTCTTTATTTGGAGAACCACAAAGAGTGCAATCACCAGTGTGTCCACAATATTGAAGAGTAGCCTACGCTGCGAAATGGATTTGCATGAAGGAGCCGCACACGGACATGGTGAGGGTGTTTTAGACTTGTCGCGTCTGAATTTGAACACTTTGAGCTTGGTCGAAATCAGCGAGGAGCGAAAGATGGGCACCAAGCAGTTGTATCTAAGCTTCAACCGACTGCCCTCGCTTCCCGGATCGGTTTGCATGTTCTCCAACCTCGAATTTCTTGACATTAGCAACAACGGACTATCGGTAATCTGTGAAGGCATTTCTTGGTTAACGAAGCTCAGAACACTAATAGCCAAGAACAACCGTCTGGACGAATTCTCGCTTCCCAAGGAGTTCGGGTCTTTGCCGTTGGAGGTGTTGAATCTAAGTGGCAATAGGTTTGAGGAGATGCCAGCGCAGTTCCTAAAGTTGCAGCGGCTACAATCACTTTCCCTGGGGGGAAACAGACTCCAAAGTATTCCTGCAGAAATTGAGAATTTAACCAGtcttgAGATGCTGTATTTGGGTGGTAACCTGATCACCTCTATTCCTCCTGAGCTGGCCAACCTGCCCTACCTCAGCTATCTGGTCCTGTGTGACAACCGCATACAAGGTGTACCCCCGCAGCTCACCAGgctCCACTCCCTGCGCTCCCTGAGTCTCCATAACAACCTGCTGACCTACCTGCCCCGGGAGATCCTCAGCCTGGTGCGCCTGCAGGAGCTCAGTCTTCGTGGCAACCCCCTAGTCGTGCGCTTTGTCAAGGAGATGACCTACGACCCCCCATCACTGCTGGAGCTGGCGGGTCGTACCATCAAGAGCCGGAACGTTCCATACTCGTCCTGCGACATGCCCTCTCACCTGTTGCACTACCTAGACCTGGCCAGCAAGTGTCCCAATCCTAAGTGTGCCGGCGTGTACTTTGACTCGTGCGTGCGCCACATCAAGTTTGTGGACTTCTGTGGGAAGTACCGGCTGCCCCTCATGCACTACCTGTGCTCCCCAGAGTGCACTTCACCCTGCAGCTCCAACCCCCAGAGCGACGCCGAGTCAGAGGATGAGATCAGCGTGCCCGCCTACCGCCTGCAGAGGGTGCTGCTGGGATAGCAGGAAGTGGAAGGGCCTCCAGTCCTAACCATATCAATAGCCTCAGAACCCGTCTTTCTCTCTGTGACTGGACGGTACTGTAGGGATGAAATCTGACCCCTCTGGTCTCGTGTGTGTTTGATGCAAGACGCTAGATGCACAAGCACAAAGACATaccctcacacacaaacacactcacatgtGAGAGATATCCGGTTGTCAATGTGGACCTAAACCAGGACAAATGTCTTTAGTTGGGTATGTCCCCTGGAACCCATTGACTCAGTCACTTTAGCCATCTAAAACTGGGGGACAAATGATGGGAGGGATCTTACCTCTATTTCTCAGTAACACTACAGATCACTGATGCCTTCAGACTTTGAGCAGTGCCTTTAACAGATGAAGCATTTCACTCCATTCCTGATGGTTTCATGGGTAAACATAGGAGGGCAGTAGAAACCATAACTTTGCCAACTCGCTATGTGAGCTATTGAAAGGTGTTTCATGATTTTAGAACACTATCACACCATTCCTTAGAGTCAGGTTATGAACAATTTAAGATTTCTAATTGCCTGAAAACAGGAAGTGTGTGCCCCGGTTCTTTGTAAAAGCTTTgtttttctctcacacacaggaaGTCGATCTAGGCCAGGCAGAGTGTGAATAGACTCCTGAAAGGAGAAAATCAAACGTATCTGACAAGATGCAATGAACGTTTGTATTTCCAGCTCTTGGTTTTCTCTAAATTTGACAAATATGTATTAACACTTTGTATGTGGGAACATTTAGACAACTTCTCCAGAAGGTACATGTTTAAGGTAACCGGAAGAATAATACAGTAGCTGGCCTTTCAATAATGCTGGTCTATTGTTACAGTATCATGTAGAAGTGCTTTtgaatgtatgtgtatatacCTTATTGAAGAGGGAAGGAATTCTAGAAAGAAAACAAAGTGAGaaaagaacaaaacaaacatttttctTGTACCCTGAAATATGTAACAATTCACTTTTTTTAATTTTCTATTTATGATCCATTAAAACTTTACTTGACACCTAGTGTCATAACATGTTATGAAACattcataacagctgacataacctgtcgtaacactgtcatgacacatatttAGACCTCTTGTGacatattgcattattttattGCTGGTTATGACCCCTACATAAAACCTACCACAAAAGGCAAAACATCCATTACACCATAACCTACATCAACTGTATTTTTATGTTTatataacattttctgaaatgtaccctattaaattatcattgtaattgtgcacacattgatgtcagacatgcagcTACCACAATgttctgttgctgatgactgggatcagatttcaggagcaggactgATGACTAACATAGGCCTATCATGTACATGCCCTTATCTGGCATATATGATactgatggtcataatgcttcttgacagtgtcgaagtgtattttcttagtccaagtaaagtgacataGGATGGTCATAGTGCTTCTTGACAGTGTTGAAGtatattttcttagtccaagtaaagtgacataGGATGGTCATagtgcttcttgacagtgtcgaagtgtattttcttagtccaagtaaagtgacataGGATGGTCATagtgcttcttgacagt

Function

symbol description
lrrc58 Orthologous to human LRRC58 (leucine rich repeat containing 58).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579316.2 True 3015 mRNA 0.45 4 25425372 25444103

Neighbor

gene id symbol gene type direction distance location
LOC110501620 gpr156 coding downstream 9032 25389774 ~ 25416340 (-)
LOC110501621 gpr156 coding downstream 24396 25396050 ~ 25400976 (-)
gsk3ba LOC106586650 coding downstream 37894 25344651 ~ 25387478 (-)
LOC110501616 LOC106582122 coding downstream 113605 25299369 ~ 25311767 (-)
LOC110501615 LOC106582053 coding downstream 146740 25273868 ~ 25278632 (-)
LOC110501623 fstl1 coding upstream 973 25445076 ~ 25503851 (-)
LOC110501625 LOC106582042 coding upstream 209376 25653479 ~ 25658365 (-)
LOC110501627 LOC106582113 coding upstream 265496 25709599 ~ 25744218 (-)
LOC110501630 LOC106582112 coding upstream 325830 25769933 ~ 25789301 (-)
LOC110501631 LOC106582111 coding upstream 347715 25791818 ~ 25799792 (-)
G1792801 NA non-coding downstream 113309 25311816 ~ 25312063 (-)
G1792525 NA non-coding downstream 159574 25221865 ~ 25265798 (-)
G1792571 NA non-coding downstream 234011 25191157 ~ 25191361 (-)
G1793311 NA non-coding upstream 204398 25648501 ~ 25649291 (-)
G1793339 NA non-coding upstream 231960 25676063 ~ 25676470 (-)
G1793374 NA non-coding upstream 288969 25733072 ~ 25733526 (-)
G1793375 NA non-coding upstream 289999 25734102 ~ 25734356 (-)
G1792433 NA other downstream 439104 24985959 ~ 24986268 (-)
G1792345 NA other downstream 567487 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 575620 24848591 ~ 24849752 (-)
G1791405 NA other downstream 1098245 24326729 ~ 24327127 (-)
LOC110501997 LOC106582152 other downstream 1965012 23368423 ~ 23460589 (-)
G1794978 NA other upstream 1824559 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 2297269 27741372 ~ 27770708 (-)
G1795850 NA other upstream 2536561 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 2565552 28009421 ~ 28019116 (-)

Expression


Co-expression Network