LOC110502118 (LOC106582051)


Basic Information

Item Value
gene id LOC110502118
gene name LOC106582051
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25564668 ~ 25587687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579989.2
aggggggaccaactctatattaatgcccatgattttggaatgagatgttcgacgaacaggtgtccacacACAGGGTATTTGCATATGTCATACACTAACAAAATAACCAGAAATTGAAAGAAATGGTCATTCCTGGGTCAACTCATGAGTTGATCATGTGGTACGAATTCGACCAGTTACACCACTTCTTAACAGACAGTGATGGGGGATTCAATTAATTTGGATGTTTTGGATGTTAATTCCACTTTGAAATCAAACTCTGAGCACATAGTCAATCACTCAGTAATCGCTGCTGAATGGGTATGTGTGATGTCTCTGAGCTCCATGGTTGTGAGGTTTTAAACATCTCTGTGCTTCTCTCTAAGACGACCACTTCCTCGTTTCTCCGTCCTCCTCAGCCTGAACAGTGGTATGGTTCCTGGTTAGCTAGCTGTGGCACTGATCACTAACTCTAAAGTTCCACTCcactctgtccgtctctctctgtcagtcacgtCCAGGGTCTTCATGGCGACTCTCCTGTCCTGGGATTTGGTTTCTGTGGTCATCACGCTGTTCCTTGTCTACACAAAGTCAGCGACAAACATTAAAACAAATAAATCAGCTTCTTTGGGAGAAGATGTTTATTTGGTGTGCAATGAATCCATGACGAACACAACTAATCAAGTCATCTGGAGAAAGGACACTGTTCTTATTCTCTCTCATTCCAAGGGGAAAATAACTCACAGAAACTTCACCTCAGGCAGGATGCGTGCTGACTCTCTTACTCCTACAGAGCTTATTATATCTATTGTAGAGCTAACTGACACCGGGACCTACAACTGTACTGTCACAGATCAAAGAGGTGTTAAGACAATGGAGTGGAATTTGACTATCACAGATAACCTCATAGATAATGCTGAACATGGCCTACAGATGTTGTTGGTCTTCACAATTCCATCTGCTATTGGAGGAGTGGCTCTGTGCATTGGTATCTGCTGTATGGTCTGGCTGTGTAGGAAAATAAAAAAGGAACAGACAAGTCATTGTGAAAGGCGAGGAGAGGAGAGCAATGCCCCATCTCAAGGTCACACTGTCCGAAGAGCACAACGCCAGCGGAGTCAGTACTTCGAAAGATTCAACTCAGTCTACGGACATTACTGAACACATCAGAAGTTGAATCAATAACAAATCAATCCCCTCCCGTTTTGGTAAAAATctgagggatgggactggagaaatgtaaccactctcaaattcctggacagagctatggatgcaagaacTGATTATATAACAATTATAGTTTTTGCCATGTTTTGAGGCaccatgtttgtttacatttagtttgtttgtaaacattggagtaaaacatgcTTATATATTGGGTTCTGACAGGGTAAAACAGCTGAACTAagttcatgaggcatttataagttatattcttcaagaatcaatgggtacatatcacaAATTTATAAATTGACAAAGCTACTTCAGATTTTCCTTATAAAGTGAATTCACCTATACCTCATAAAGACCTTACTTCATGTAAATTAATTAGGAATGTGTGTAAAcctactctctcctctggctATGGAATTACACTCAAATGTACAGTAAGTGTCACGGCCGATgaaagtggaccaaggtgcagcgtggtgagcattcattttcctttttatttaaaatgttgccaacaaaacaacaaacgaaagcCACAACCATGCCGCTTACAGGgctttagtgccacaaacaaagttaactacccacactgaaggagggaaaaagggctacctaagtatga

Function

NR:

description
uncharacterized protein LOC110502118

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579989.2 True 1786 mRNA 0.41 5 25564668 25587687

Neighbor

gene id symbol gene type direction distance location
LOC118943581 NA coding upstream 156927 25401479 ~ 25407741 (+)
cfap91 maats1 coding upstream 230811 25325231 ~ 25333857 (+)
LOC110501614 ox2g coding upstream 341192 25193435 ~ 25223476 (+)
LOC110501611 pdzd1 coding upstream 401829 25155097 ~ 25162839 (+)
LOC110501609 fam155a coding upstream 556275 24848514 ~ 25013655 (+)
LOC110501624 LOC106582115 coding downstream 31491 25619178 ~ 25651263 (+)
LOC110501626 LOC106582114 coding downstream 88350 25676037 ~ 25695731 (+)
LOC110501629 ppa6 coding downstream 115209 25702896 ~ 25708893 (+)
LOC110501634 LOC106582107 coding downstream 320156 25907843 ~ 25914106 (+)
LOC110501637 LOC106582050 coding downstream 335745 25923432 ~ 25926978 (+)
G1792941 NA non-coding upstream 18594 25545871 ~ 25546074 (+)
G1792712 NA non-coding upstream 118048 25398662 ~ 25446620 (+)
G1792728 NA non-coding upstream 129941 25424834 ~ 25434727 (+)
G1792726 NA non-coding upstream 137490 25425280 ~ 25427178 (+)
G1792647 NA non-coding upstream 203162 25344679 ~ 25361506 (+)
G1792979 NA non-coding downstream 14114 25601801 ~ 25644871 (+)
G1793014 NA non-coding downstream 64680 25652367 ~ 25652905 (+)
G1793018 NA non-coding downstream 71507 25659194 ~ 25659418 (+)
G1793021 NA non-coding downstream 74296 25661983 ~ 25662213 (+)
G1792968 NA non-coding downstream 77372 25665059 ~ 25700870 (+)
G1792649 NA other upstream 268111 25294546 ~ 25296557 (+)
G1792040 NA other upstream 721383 24842942 ~ 24843285 (+)
LOC110501605 LOC106582130 other upstream 1153955 24394068 ~ 24423067 (+)
G1790805 NA other upstream 1445193 24118562 ~ 24119475 (+)
G1793045 NA other downstream 143639 25731326 ~ 25731754 (+)
G1793717 NA other downstream 728139 26315826 ~ 26316243 (+)
G1795411 NA other downstream 2315895 27898367 ~ 27912875 (+)
LOC110501693 LOC106582057 other downstream 2449241 28036917 ~ 28052019 (+)
G1795550 NA other downstream 2503878 28091565 ~ 28092116 (+)

Expression


Co-expression Network