LOC110501625 (LOC106582042)


Basic Information

Item Value
gene id LOC110501625
gene name LOC106582042
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25653479 ~ 25658365 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579319.2
tgtgtgtgtgtgtgcgtgcgtgcgtgcgtgtgtagggCTGTATTGAGGAGAGCTGCAGAGGGGATGTACTCGGTTCCCTGGCTCTGTGGTGTCCATGTTGCTTTGGGAGCCTCAGGCCTGCTCCCATACATCCCACTCTGGGTCTGTTGATCCTATTGTCTCCTCCGTCACCACGCATCGCCCGGCGAATAAAGGCTGTCTGGCTCCAAGCTTAAATATTGCAGCAAACTAAAAACCAACCATCAGAGCTGATTCATTCACATCTGCTCAGTGGGGCAACAAGGACAGGGCTTTAGGTGGGAAAGAGGGCAGAAGTCTACTTTTCCCCGCCGGGTGCCaagagaacaggacaggacactacAACTTCGCCGGAGCCGCATCTGTGCGCTACGGACCGATCATGGGTGACTGGAGCTTTCTGGGTAATATTTTAGAGGAAGTGAATGAGCACTCAACGGTGATCGGCCGGGTGTGGCTCACGGTCCTCTTCATCTTCCGCATCCTCATCCTGGGTACGGCGGCAGAGTTTGTGTGGGGCGACGAGCAGTCAGACTACGTCTGCAACACGCAGCAGCCCGGTTGCGAGAATGTGTGTTACGACGAGGCGTTCCCCATCTCCCACATTCGCCTGTGGGTTCTGCAGATAATTTTTGTGTCCACGCCATCTCTGGTCTACGTGGGCCATGCCGTGCACCACGTCCACATGGAGGAGAAACGCAAGGAGCGTGAGGAGGCCGAGCTGAGTCGCCAACAGGAGCTAAGTGAGGAGCGGCTGCCACTAGCGCCTGACCAGGGCAGCGTGCGCACCACCAAGGAGACCAGCACCAAGGGCAGCAAGAAGTTCAGGCTGGAGGGCACCCTGCTGAGAACCTACATCTGCCACATCATCTTCAAGACGCTGTTCGAAGTGGGTTTCGTAGTGGGCCAGTACTTTCTGTACGGCTTCCGCATCCTGCCGCTGTACAAGTGCAGCCGCTGGCCCTGCCCCAACACCGTAGACTGCTTCGTGTCCCGGCCAACAGAGAAGACAGTCTTCATCATTTTCATGTTGGCCGTGGCTTGCGTCTCGCTCTTCCTCAACTTTGTGGAGATCAGCCATCTGGGCTTGAAGAAGATCCGCTTCGTCTTCTGGAAGCCAACCCCGGGGCAAGCCCAGGGTGAAGGCCTGAGCCCCATGCCCCCCCCAGGGGGGATCCTCAAGAGCCTGCCTCCCCTGGCCGTGCCTTCCATCCAGAGGGCCAAAGGCTACAGGCTGCTGGAGGAGGAGAAAGCCCCGTCCGTGACCCACCTCTATCCTCTGGCAGAGACGTGCATGGAGGCAGGGATGTTAACCCCCCTGGCCCCACCCTTCCAGTGCATGGAGGAGAAGGCGGAAGAACTGAGGCACACGGAGGACATTTCTAAGGTGTACAATGAGTCCCTGCCCTCCTATGCCCAAACCACCGAGATAGGGGAggacacactaccactacaccaagaggagcaggagcagcaggaggtggtggaggaggacaaagaagaggaggaagtagtggaggagGCGGAGATGGAGGTGACGGATACGATAGAAGACACCAGACCACTGAGCAGATTGAGCAAAGCCAGCAGCAGGGCCAGGTCAGACGATCTCACCGTATGAACCTGTGAGAGAAAACATGCGCACACCCGCACACCGAACACAGGAGAACATACACCTAACTCTAGACAACACACACTTAAAACAGCAGGGCTTAACCAAGGGAAACACATGTAAATCCAACAGGGATAGATTCAATCACAAGTTACACATTACCCTTATGATGTGGGCAACATCATTCAACAAGGCAAAGAAAGATCTGAGCTTGTTTGTGAGATAAGTGAATATTATAAAAAGTAGCGGTTAACAAGAGGAGGGATAGATTTTTTTTCATTAAGCTCTTATGTAAAAAATGTAGAAAGGGCAAACATGCAGAAAGGGGAAAATATTTTTACTTTAACAATAACCAATGAAAGTTCACTAATGTTTACATATTCTGGTGGGGTTGAATGGGTAGGGGAAGAGATTGAGCATATATTCCTGTCTGCAAGGCAGTAACATTACTGTAGGCAGGCAAGCACTTTCATTCCCATACAGTCGGTGACAGACTGCAATTATGTAGTTGCAAACATGTTGCAGGTGGAAGGGCTCTTATACACCAAGTCCTTGCACAGAAAAATAATGGAACAAAATTTACAAACTTATGACTGACTCTTCAACACTAAGTTGATAGTCATTTTTTGGGATAAAAAATAGCATCATTTTGGCACACATTTCCTAGAGAACAGAGAACTCTGTGCAAGGCCAATATAACCCTCATATCAACTCAATTATGCTATTTACATTTCTTTCAATTGAAGGGAGATTTGCATCTATGTACAAGAACATATCTCTCCCTTTCATATTTATATGCAGCGTTGTACAGCCAAAAAGCTGGGTAGTGGAGAAAAACAAACCCCAAAAATATCACATGTTGAATGTCTCTTTTCAATGTGATTCTACAGCTCATCTCTTGGATTGCTTATATATTGTGTTGCCTATATAATGCAGAAGTGTGAACTGTTATAATGATGTCTTTTTGTGAAAGAGAGGAGTGCTGGTTTTGCCCGATCACAGACTGGACCATAGTAACAACCTCAGGCCAAATCCTCTCTTTTCGCCCTGTACAAACAGGCTTCAGAGCGATAAAGATCACGCCCGATCAGCACAAAGTATTGTGGAGCCACAGACAATAAAATAAACCACTCTCACATATGAAAAACACGCTTCCTTGACATTGTTGTGGGGGAAAAATAGTTTTACTTGATTTTATCTGCCCTTGATGTTCCTTGCCCCTGTACAAATATGAAATACTTGTTTACAaaattttgaaagaaaaacaataaATGGTGAATCTCATTGTACATAAACTATCATCCTATCTGATGTCTAATAGCAAACATAATGTTGAGACAGTTTAAGTTATGATATTATGTCTAGCTAAATTACTAGAAAACAGTCAAGAAACATCATAATGCTGCTCAAGTCACTGATTTGGTAGGGAAAATTAAGTGCTTATCAAAATTGAATCATTATTTCCATAATTACCAAAGACTTGCTTTGCAGAACTTTGACCTTTCTTATCGCTGTCCCagagatgtttttatttttacatgtTTAAAAAGTTGTTAAGAGAGCAGAATTCTCTCTTACAAGTACTTTTttaaattaaaacaaaaaaacaattccCCTTGAAAGGGATGCCTTAAAGTATGACTTATGTGTATTTAAtttaatatttctatatttttctctcttgctctctccgcTTTATTTAGATTGCTTGGCTATTTTGCTTTCCAATGTATGTGCTTTATCTGTAAATGTAAATTCTCAGATGTCTTTGTAAAGGTTAAAGCACTTCCATTGCTCTGGGAACTATGTGAATGTCATGTCTTAAATTCAACGTTTTTTTCCCTTAGCTTTCAAATAATCCTTTGTACATGCAAACACCCCCTTAATTTGTTAGGGAAATGTAAAGTTTGTCTGCAAATAACTGTACTTATTCTCAGTCTGTGCTGTGCCTTAAAGCAAAGCATTGGTCAATGCAGCAGTGGGTTTATCCAGTGGCACAGATCAAATGGTGCAGAAAAgccacaagcacgcacgcactcacacatgcatacacgtgtgcatgcacacacacacacacacttccagtgTTGGTTTTGGGGGTATGATCAAACGGCTCTAGACAAACTCTGACAGAAAGGCAGCTTTGACCCCTTTGTGACCCCTAGCCACTCAGTTGCTTCCCATAAGCCAATGCTTTGACAACATTGTGAATGAGACAACAGGCTTTTCACAAATGCAGAATAGTTTAGCCCATTTCAACACTGAAATATATTCCAAAATGTGTTCTGGTTCTCATGTGTGGTAAATTCATATAACTGGtacatgtgtgttttgtgtttcgAACAGTTCTCCTTGCTTAATCGTTTGTAAGAACATTTGACTAATCTTTGGAAAGAAAATATAACCTTTTACTAACTTCTAGTCCTCCTAGTTGTGTGACTGTATGATCTTTTGGACAGTGAACCAAGGCAATAAAAGGTCACACGTG

Function

NR:

description
gap junction alpha-8 protein-like

GO: NA

KEGG:

id description
K07617 GJA8, CX50; gap junction alpha-8 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579319.2 True 4118 mRNA 0.45 3 25653479 25658365

Neighbor

gene id symbol gene type direction distance location
LOC110501623 fstl1 coding downstream 149628 25445076 ~ 25503851 (-)
LOC110501622 lrrc58 coding downstream 209376 25425372 ~ 25444103 (-)
LOC110501620 gpr156 coding downstream 237139 25389774 ~ 25416340 (-)
LOC110501621 gpr156 coding downstream 252503 25396050 ~ 25400976 (-)
gsk3ba LOC106586650 coding downstream 266001 25344651 ~ 25387478 (-)
LOC110501627 LOC106582113 coding upstream 51234 25709599 ~ 25744218 (-)
LOC110501630 LOC106582112 coding upstream 111568 25769933 ~ 25789301 (-)
LOC110501631 LOC106582111 coding upstream 133453 25791818 ~ 25799792 (-)
LOC110501632 LOC106582041 coding upstream 156456 25814821 ~ 25842967 (-)
LOC110501633 LOC106582109 coding upstream 186131 25844496 ~ 25891165 (-)
G1793311 NA non-coding downstream 4188 25648501 ~ 25649291 (-)
G1792801 NA non-coding downstream 341416 25311816 ~ 25312063 (-)
LOC110501616 LOC106582122 non-coding downstream 341728 25299369 ~ 25311767 (-)
G1792525 NA non-coding downstream 387681 25221865 ~ 25265798 (-)
G1793339 NA non-coding upstream 17698 25676063 ~ 25676470 (-)
G1793374 NA non-coding upstream 74707 25733072 ~ 25733526 (-)
G1793375 NA non-coding upstream 75737 25734102 ~ 25734356 (-)
G1793376 NA non-coding upstream 78688 25737053 ~ 25737347 (-)
G1792433 NA other downstream 667211 24985959 ~ 24986268 (-)
G1792345 NA other downstream 795594 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 803727 24848591 ~ 24849752 (-)
G1791405 NA other downstream 1326352 24326729 ~ 24327127 (-)
LOC110501997 LOC106582152 other downstream 2193119 23368423 ~ 23460589 (-)
G1794978 NA other upstream 1610297 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 2083007 27741372 ~ 27770708 (-)
G1795850 NA other upstream 2322299 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 2351290 28009421 ~ 28019116 (-)

Expression


Co-expression Network