LOC110501631 (LOC106582111)


Basic Information

Item Value
gene id LOC110501631
gene name LOC106582111
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25791818 ~ 25799792 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958991.1
GGAAGTTATGGACGAACTCTACGCGGGAAACCCATGTTGTTTTGTCTGTGCAGTCTGCTTGTCGACTGGACTCAGCAGATAAGTGAAACAGCCGAAAAACAGCAGGATGAAGGTGATAACATGTGAGATTGCGTGGCACAACAAAGAGCCTGTCTACAGTCTGGACTTCCAGCACAACTCAGAGGGCCGCATACACAGGCTGGCCACAGCAGGAGTGGACACCACTGTCAGGCTGTGGCGTGTGGAGATGGGGCCTGATGGGAAGGCAGTGGTGGACTTCCTGTCAAACCTGGCGCGGCACACCAAGGCCGTCAACGTGGTGCGCTTCTGCCCCAACAGCGAGCTGCTCGCCTCTGGAGGAGATGATGCAGCCATCCTGCTGTGGAAGCTAAACGACAGTAAGGAGCCTGAACAGGCCCAATCgttccaggaggaggaggacagtcaGCTCAACAAGGAGAGCTGGAGCGTGGTCAAGACCCTGAGGGGACACATAGAGGATGTGTATGATATCAGCTGGACCCGGGATGGGAACTTCATGGTCTCTGGTTCTGTGGACAACACTGCCATTATGTGGGATGTCACAAAGGGTCAGAAGCTGTGCATCTTTAACGACCATAAGAGCTATGTGCAGGGAGTGACCTGGGACCCGCTGGGCCAGTATGTGGCCACACTCAGCTGTGACCGggTGATGCGTGTGTACAGTACTCAGAGCAGGAGGAAGGCCTACAGTGTCAGTAAGATGAGCTCTGGATCAGCTGTCGAGGGAGAGGTGAAACAGTACCGAATGTTCCATGACGACAGCATGAAGTCTTTCTTCAGGCGACTCACCTTCACACCGGACGGATCCTTTCTGCTTGCCCCAGCGGGGTGTGTGGAGGCAGGGGAGAACGTCACCAACACTACATACGTCTTCTCCAGGAAGAGCCTCAAGAGGCCCATAGCTCACCTGCCCTGCCCTGCTAAAGCCACCCTGGCTGTACGCTGTTGCCCTGTCTACTTCGAGCTGAGGACCAAGAAGGGAGATGATGGCAGTGCCCAGCCCCTGCCCAACATGTTTGGCTTGCCATACAGACTGGTGTTTGCTGTGGCATCAGAGGACTCCATCTTCATCTATGACACTCAGCAAACCCTACCCTTCGGCTACGTGTCCAACATCCACTACCACACACTCAGCGACCTCACCTGGTCTCGGGACGGTTCTTTCCTGGCGGTGTCTTCTACAGACGGCTACTGctccttcctttccttctctcctggTGAGCTGGGCACCCCCCTGAAGGAGCCCCCAGTCCTGGAGGTCGTCACCCCTGGCAATGGCCCAGAGAAGAAGGGCAAGAAGGCTGCCATGACTCGCAGGGTGTCCCCCGTCCCTAAAACCACAGAGAGCACCGCCACTGTCCACGCCATTCCTAAAGAGACCCCCAGCACCTCCCATGCCACCCCCCTGGTCCCTGGGGGTGAGGAGAATAACAACCCTGGCAAGGCCAAGCTACAGCCCCGTAGGATCACCCTCAACACCCTGGAGGGATGGGGCAAGCCCAGCACCCCCAAAGCCACTGCTGCTAATTCCCCCAAGATCCCTACCACAGCCAACATCAGcgccccctccaccccccagcAGCCTCACCTCATCGCCTCTACCCCCAACACCCGCCTCACCCCCTCTACAGCCCAGCCCTGCCTCACCCCAACGGCCCACAGAAACACTCTTGGTCCCAGCACCCCTAAAGCTAGCACCACCCCTAAAGAACCTGTCCCCAGACGGATATCTCTGACTCCCGTCGTCTCTAGATCTTCAGCTGCCTTCACCACACCCTCCTCCACGGAGAAAGCCAAACGTGAACAACCCTCTCCCCCCACCGAACCAGTGTGCCAGCCCCCAGAATCCAAGCGGCCCAAGACCAGCACCCTGGCACGCAAGACAGGGGTGGCTCCAGCCTCAAGGGCCACACCCAACCCCTAAGGACCCCTCATTGCCAAGAACCCTCTGCAGGACAGAGTGGTGTCAACATGCAACTCGCATATTatcatcctacacacacacacacactcacaagtgTCTAGCCTATAGAACTGCTTAGAGACTGGTGTGAcctaatttacacacacacactcacaaaagttcacGGAGCAAAGACTGGTGTTTCCTCCTAATGCAATTTTCTGTATATTTTTGTAATTTCACATCCTGAATTGTTCTGTAGATCATTTTATTGGATAAGCAGGTAGTTATTTAAGTCATAATGCCCGAGAAGCAGTGTTagccgtgccaatatatcctccaaacacagtCTTTGAGGGCATTATCAATTTTATACagtgggttaccaacatattcaaataaggttattttcatgaatttattcatgctatttcatccttcctcaagatatagtcccgacacaaatctagggttctacccaagccggctggtcattcgttcagtctttttgttctgtatctatgccatactggctggcaacgtccttatcccttgcttgctaacTACCAACTACGGCTACCatagtcacgtcaaacagtgcagacagaataacagtagctgcatttgtttaagctgctttctagtgacatttattttgaaacatccataacaatgagcttaTGAGACAATGTGCTCTCATCAGggcactgttgttcagaggagctagctaaAAACACAGCTACAATAACTTCAAAgggaagctggaaagactgcaaactagctttgtttcatttgaccttttttcaattgacatttctttgtttgTATTCATAAAAATTATGCCagttgattcatgatttcgactggctgagaaacgcttgCCTGTCTTTCTCGTCCCGATCCCTAGaagttcattactatgggacagctggagattgaaTTTGACTATTGaagcaaatgtcagagagacagacagcaaggttcaTACAAATCTCCATTGTTGAAAagtaaatgttagtctaaaagaaatgtgagaatgtctagatgctttttaaagtttataacttccctgcctaggctgatgagacagtggattacgCATTCAGATGGAGCAGAGTAAAtgggcattttaacatcataggtttagccagtggtaacttgtggaaagACACGGGCTGGAATGCGCTTTTAACCGATCAGCTTTctggattagacccacccgttgtataatttaaattaaaaactgtggttccagccctgaatgctgattggatgacagccatggtatatcagaccgtataccacgggtatgaaaaaacatttatttttactgctctatgctggtaaccagtttataatagcaataaggcagttctggggtttgtggtgtatggccaatataccacggcgaTGCGtagtgcctaagaacagccctcagctgtagtatattggccatatgccacACCCCCTCATGCGATAATtcttaaataaaaatgtacctggctaaaaaTAAAGGATAAGAAACAGAAAGTTACATATAAGATAAAACCACCCCAGGCCAAATTATGCTTAGCTCATGTATGAAATTGTACAATGGTCATTGACTTTAGTCTGAATGGTTGTCTGTAGTGGTATATTGGGGTTGTTTCTCCTTTTTATATGAATGTTTGTGTATTGTACTTTTGGGATTTTGGTAACACTTCAATGCAGTAATGCTTGtctaaaaaaata
>XM_021579329.2
ctcctatcactGTTGACTTCTCTACCGGAAGTTATGGACGAACTCTACGCGGGAAACCCATGTTGTTTTGTCTGTGCAGTCTGCTTGTCGACTGGACTCAGCAGATAAGTGAAACAGCCGAAAAACAGTAGCAGGATGAAGGTGATAACATGTGAGATTGCGTGGCACAACAAAGAGCCTGTCTACAGTCTGGACTTCCAGCACAACTCAGAGGGCCGCATACACAGGCTGGCCACAGCAGGAGTGGACACCACTGTCAGGCTGTGGCGTGTGGAGATGGGGCCTGATGGGAAGGCAGTGGTGGACTTCCTGTCAAACCTGGCGCGGCACACCAAGGCCGTCAACGTGGTGCGCTTCTGCCCCAACAGCGAGCTGCTCGCCTCTGGAGGAGATGATGCAGCCATCCTGCTGTGGAAGCTAAACGACAGTAAGGAGCCTGAACAGGCCCAATCgttccaggaggaggaggacagtcaGCTCAACAAGGAGAGCTGGAGCGTGGTCAAGACCCTGAGGGGACACATAGAGGATGTGTATGATATCAGCTGGACCCGGGATGGGAACTTCATGGTCTCTGGTTCTGTGGACAACACTGCCATTATGTGGGATGTCACAAAGGGTCAGAAGCTGTGCATCTTTAACGACCATAAGAGCTATGTGCAGGGAGTGACCTGGGACCCGCTGGGCCAGTATGTGGCCACACTCAGCTGTGACCGggTGATGCGTGTGTACAGTACTCAGAGCAGGAGGAAGGCCTACAGTGTCAGTAAGATGAGCTCTGGATCAGCTGTCGAGGGAGAGGTGAAACAGTACCGAATGTTCCATGACGACAGCATGAAGTCTTTCTTCAGGCGACTCACCTTCACACCGGACGGATCCTTTCTGCTTGCCCCAGCGGGGTGTGTGGAGGCAGGGGAGAACGTCACCAACACTACATACGTCTTCTCCAGGAAGAGCCTCAAGAGGCCCATAGCTCACCTGCCCTGCCCTGCTAAAGCCACCCTGGCTGTACGCTGTTGCCCTGTCTACTTCGAGCTGAGGACCAAGAAGGGAGATGATGGCAGTGCCCAGCCCCTGCCCAACATGTTTGGCTTGCCATACAGACTGGTGTTTGCTGTGGCATCAGAGGACTCCATCTTCATCTATGACACTCAGCAAACCCTACCCTTCGGCTACGTGTCCAACATCCACTACCACACACTCAGCGACCTCACCTGGTCTCGGGACGGTTCTTTCCTGGCGGTGTCTTCTACAGACGGCTACTGctccttcctttccttctctcctggTGAGCTGGGCACCCCCCTGAAGGAGCCCCCAGTCCTGGAGGTCGTCACCCCTGGCAATGGCCCAGAGAAGAAGGGCAAGAAGGCTGCCATGACTCGCAGGGTGTCCCCCGTCCCTAAAACCACAGAGAGCACCGCCACTGTCCACGCCATTCCTAAAGAGACCCCCAGCACCTCCCATGCCACCCCCCTGGTCCCTGGGGGTGAGGAGAATAACAACCCTGGCAAGGCCAAGCTACAGCCCCGTAGGATCACCCTCAACACCCTGGAGGGATGGGGCAAGCCCAGCACCCCCAAAGCCACTGCTGCTAATTCCCCCAAGATCCCTACCACAGCCAACATCAGcgccccctccaccccccagcAGCCTCACCTCATCGCCTCTACCCCCAACACCCGCCTCACCCCCTCTACAGCCCAGCCCTGCCTCACCCCAACGGCCCACAGAAACACTCTTGGTCCCAGCACCCCTAAAGCTAGCACCACCCCTAAAGAACCTGTCCCCAGACGGATATCTCTGACTCCCGTCGTCTCTAGATCTTCAGCTGCCTTCACCACACCCTCCTCCACGGAGAAAGCCAAACGTGAACAACCCTCTCCCCCCACCGAACCAGTGTGCCAGCCCCCAGAATCCAAGCGGCCCAAGACCAGCACCCTGGCACGCAAGACAGGGGTGGCTCCAGCCTCAAGGGCCACACCCAACCCCTAAGGACCCCTCATTGCCAAGAACCCTCTGCAGGACAGAGTGGTGTCAACATGCAACTCGCATATTatcatcctacacacacacacacactcacaagtgTCTAGCCTATAGAACTGCTTAGAGACTGGTGTGAcctaatttacacacacacactcacaaaagttcacGGAGCAAAGACTGGTGTTTCCTCCTAATGCAATTTTCTGTATATTTTTGTAATTTCACATCCTGAATTGTTCTGTAGATCATTTTATTGGATAAGCAGGTAGTTATTTAAGTCATAATGCCCGAGAAGCAGTGTTagccgtgccaatatatcctccaaacacagtCTTTGAGGGCATTATCAATTTTATACagtgggttaccaacatattcaaataaggttattttcatgaatttattcatgctatttcatccttcctcaagatatagtcccgacacaaatctagggttctacccaagccggctggtcattcgttcagtctttttgttctgtatctatgccatactggctggcaacgtccttatcccttgcttgctaacTACCAACTACGGCTACCatagtcacgtcaaacagtgcagacagaataacagtagctgcatttgtttaagctgctttctagtgacatttattttgaaacatccataacaatgagcttaTGAGACAATGTGCTCTCATCAGggcactgttgttcagaggagctagctaaAAACACAGCTACAATAACTTCAAAgggaagctggaaagactgcaaactagctttgtttcatttgaccttttttcaattgacatttctttgtttgTATTCATAAAAATTATGCCagttgattcatgatttcgactggctgagaaacgcttgCCTGTCTTTCTCGTCCCGATCCCTAGaagttcattactatgggacagctggagattgaaTTTGACTATTGaagcaaatgtcagagagacagacagcaaggttcaTACAAATCTCCATTGTTGAAAagtaaatgttagtctaaaagaaatgtgagaatgtctagatgctttttaaagtttataacttccctgcctaggctgatgagacagtggattacgCATTCAGATGGAGCAGAGTAAAtgggcattttaacatcataggtttagccagtggtaacttgtggaaagACACGGGCTGGAATGCGCTTTTAACCGATCAGCTTTctggattagacccacccgttgtataatttaaattaaaaactgtggttccagccctgaatgctgattggatgacagccatggtatatcagaccgtataccacgggtatgaaaaaacatttatttttactgctctatgctggtaaccagtttataatagcaataaggcagttctggggtttgtggtgtatggccaatataccacggcgaTGCGtagtgcctaagaacagccctcagctgtagtatattggccatatgccacACCCCCTCATGCGATAATtcttaaataaaaatgtacctggctaaaaaTAAAGGATAAGAAACAGAAAGTTACATATAAGATAAAACCACCCCAGGCCAAATTATGCTTAGCTCATGTATGAAATTGTACAATGGTCATTGACTTTAGTCTGAATGGTTGTCTGTAGTGGTATATTGGGGTTGTTTCTCCTTTTTATATGAATGTTTGTGTATTGTACTTTTGGGATTTTGGTAACACTTCAATGCAGTAATGCTTGtctaaaaaaata

Function

NR:

description
chromatin assembly factor 1 subunit B-like

GO: NA

KEGG:

id description
K10751 CHAF1B; chromatin assembly factor 1 subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958991.1 False 3676 mRNA 0.49 14 25791818 25799766
XM_021579329.2 True 3705 mRNA 0.49 14 25791818 25799792

Neighbor

gene id symbol gene type direction distance location
LOC110501630 LOC106582112 coding downstream 2517 25769933 ~ 25789301 (-)
LOC110501627 LOC106582113 coding downstream 47600 25709599 ~ 25744218 (-)
LOC110501625 LOC106582042 coding downstream 133453 25653479 ~ 25658365 (-)
LOC110501623 fstl1 coding downstream 287967 25445076 ~ 25503851 (-)
LOC110501622 lrrc58 coding downstream 347715 25425372 ~ 25444103 (-)
LOC110501632 LOC106582041 coding upstream 15029 25814821 ~ 25842967 (-)
LOC110501633 LOC106582109 coding upstream 44704 25844496 ~ 25891165 (-)
LOC110501636 LOC100194724 coding upstream 97968 25897760 ~ 25904394 (-)
LOC110501638 LOC106582105 coding upstream 145341 25945133 ~ 26001224 (-)
LOC110501639 LOC106582104 coding upstream 211149 26010941 ~ 26013975 (-)
G1793380 NA non-coding downstream 50785 25740701 ~ 25741033 (-)
G1793377 NA non-coding downstream 54030 25737529 ~ 25737788 (-)
G1793376 NA non-coding downstream 54471 25737053 ~ 25737347 (-)
G1793375 NA non-coding downstream 57462 25734102 ~ 25734356 (-)
G1793374 NA non-coding downstream 58292 25733072 ~ 25733526 (-)
G1793361 NA non-coding upstream 6625 25806417 ~ 25807803 (-)
G1793356 NA non-coding upstream 11543 25811335 ~ 25813715 (-)
G1793433 NA non-coding upstream 119478 25919270 ~ 25919512 (-)
G1793593 NA non-coding upstream 320793 26120585 ~ 26120802 (-)
G1793594 NA non-coding upstream 321586 26121378 ~ 26121658 (-)
G1792433 NA other downstream 805550 24985959 ~ 24986268 (-)
G1792345 NA other downstream 933933 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 942066 24848591 ~ 24849752 (-)
G1791405 NA other downstream 1464691 24326729 ~ 24327127 (-)
G1794978 NA other upstream 1468870 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 1941580 27741372 ~ 27770708 (-)
G1795850 NA other upstream 2180872 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 2209863 28009421 ~ 28019116 (-)
G1796204 NA other upstream 2534432 28334224 ~ 28334621 (-)

Expression


Co-expression Network