LOC110501638 (LOC106582105)


Basic Information

Item Value
gene id LOC110501638
gene name LOC106582105
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25945133 ~ 26001224 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579339.2
ccGAGCAGTTACTTGCTCCAGCTCCGCCTTGATCTAAACAGGAAGCCTGTTGGACCTTAGTGCAGCTGAAAGCAAGCCCTTTGGACCCTAGTGTAGTTGTAAGCAAGCGGGTCGGATCTGCTAGCTATCTGCTGGAGAAGCAGCAACACCGCCTCTGGATCAGTTGGATTTGCAGCCTAGGTGTGCCCAGCTGTAAACATAGCAGCTTGTTTTCACGCCAAAACGCGGAGTGAAGGAATGTCGCCAACATAAAAAGGTCAATGTGTCGACTACAGGACCTCTACAGGGTTGTTGTCAATGTAGGTCCCTGACGTCTTCAGTCTGCTGCCAGTCTGTTTAGTTAGTTAACCCATCTCTTCCTGCATCAGACCACCATCACCCTCCTGCATCACACCCAGGCACCCTCCTCAGACACCTGGCCAATCGCTTGTTCTGAACAGCGTTACCATGGACACCGAGTCCACCCACTCTGGCTACTCCAACAGATCCAACAGACATGGggagcaGAGTCGGCGTGAGCGGCGTAAGCTCAGCAGTAAGGACAGCAGCCGGTCAGAGCGGTCTGTAATCATCAACAGCCCCTACGGGCCCACTCAGGCCTCCCCCAACCACAACAGCGAGCCCCTGCTAGAAGTCCCCAGCTCTGTGGCTGGAGACGAGGCTCCAAGCCTCCAGgATGATAACTGGGGGGAAACCACCACGGCGGTGACTGGCACCTCAGAGCTTAGTCTATCCCAGGAGGAGGTGGTTGGTCTGGGGAAGAGGTCAGAGGACGGCCTGGGGCAAGGCTGTCGGCGTTACGCTCCCCTAGCTCTGGGCCTCTGTGTGGGGCTACTGGTCCTGGCCACCCCTCTGGCCTTCCTGGTCCTCCCGGCGGTGCTGTGGCCGGCCAGGCTGCAGGCCTGTGGCTCAGCCTGCGAgggcctcttcctctctgtgtcctGTAAACTTCTCATCCTTCTGCTAGCTGTGTGGGCGATCTTCCTGCGCCAGGCCCGTGCCAGCCTgcccagggtgtgtgtgtaccgAGCCCTCCTGGCCATGCTCACACTGCTGCTCACAATCTCCTACTGGCTGTTCTATGGGGTCCGCATTCTCGACTCACAGGATGAGGACTACCAGGGTATCGTCCAGTTCGCTGTGTCTCTGGTGGACTCTCTGCTGTTTGTCCACTACCTGGCCATTGTTCTGCTGGAGCTCAGACAGCTCCAGCCCTGCTACAGCCTGTGTGTTATACGCTCCACTGACGGAGAGACACGCTACTACAACCTGGGACAGCTCAGtattcAGAGGGCAGCGCTGTCTCTGCTGGAGTTCTACTACAGGGACTTCCCTCTCCATAACCCTGCCCTTCTCTCCGCCTCCAAGCACCGTGCCGCCAAGCACCTGGCCGGCCTCAAGGTCTACACCGTGGACGGCCCAGTGAACCCAGCGGGGCCAGCAGGGGGATCAGGGGGATCGCAGGTGGGGGGTCAACCGCGGGCCATGATCTCTGCAGCAGCCAGGCGCAGAGACGCCACTCACAACGAACTATACTACGAAGAGGCCGACCATGACCGACGGGTCCGCAAACGCAGAGCCAgGCTAGTGGTGGCTGTGGAGGAGGCCTTCATGCATGTGAGGCGGATGCAGCAGGAGGAGCAGAAAGCATCCCCTGGGGATGTGATGGACGTACGGGAAGCGGCCCTGGCCATCTTCCCCTCCATGGCCCGCGCCCTGCAGAAATACCTCCGAACCACCAGAAGGCAGCACTGCCACAGCATGGACAGCATCCAGAGACACTTGGCCTTCTGCCTCACACACAACATGAGCCCCAAGGCATTCCTGGAGGCCTACCTGTCCCCTGGTCCTACGCTACAGTATGGTCGAGAGCGCTGGATGGCCGGTCAGTGGACTCTGGTCAGCGAGGCTGCGGTCACTAGCGGTCTAAAGGAGGACACAGTCTTCTCACTGAGGTGTCTAGATTTCAGCCTAGCGGTAACAGTCAAGTCCATCCCCTACATTGAAATGACAGAGGAGTACGTCGATCCAAAGTCACACAAGTTTACCCTGAGTCTCCAATCTGAAACATCAGTCTAACAGACGCATGTAGAAGAACTGTGGGAATTCTAGACTTGTCTTTTTTGAGTTCAGTTTCTTAAACCCTCTTTTACTTTGACATGCTATTTTGCTTTTGTCTTCTATTTATATTACCGGTGTTCATAAAGATTATTTTGGCTACTTTGAGATTTGTTATTGTACGTAATTGATATGAACAGATGCATATTGGATATTGTAACAAGATGAAGTGTTAGCTGGTCATATAATAGTTAATAAATGGTAGGGATCCCCAGCCCTATGGCTCTTTTGGAGTGAAGATGACCGATGGAGAGAGTTAGGGAACATGCTCTGATTTCTATTGTCCTGAGGCACACTGGAACATTGAATTATGTCAGCGGGTTTTCAATACACTGTAGATGACCCTCCCGCATTTTGttcttcctctgtgtgtgtgtgtgtctgtgtgtgtgtgcgtgtgtgtgtgactgtgtgtgtatgtagggggGTATTTTCATATGGTCTGCCCTGCTAATATGAATGAAATACTACCTAATAATCACAAACAGTTCAGGTTCAGTTTTATCAAACTAAGAATTGCTTTTCTTTACAGTTAATGGATTGTACATGTGTGTTTTTATatacggttgaagtcggaagtttacatacacttaggttggagtcattaaaactcgtttttcaaccactccacaaatttcttcttaaaaaactatagttttgtcaagtcggttaggacatctactttg
>XM_021579338.2
tccGAGCAGTTACTTGCTCCAGCTCCGCCTTGATCTAAACAGGAAGCCTGTTGGACCTTAGTGCAGCTGAAAGCAAGCCCTTTGGACCCTAGTGTAGTTGTAAGCAAGCGGGTCGGATCTGCTAGCTATCTGCTGGAGAAGCAGCAACACCGCCTCTGGATCAGTTGGATTTGCAGCCTAGGTGTGCCCAGCTGTAAACATAGCAGCTTGTTTTCACGCCAAAACGCGGAGTGAAGGAATGTCGCCAACATAAAAAGGTCAATGTGTCGACTACAGGACCTCTACAGGGTTGTTGTCAATGTAGGTCCCTGACGTCTTCAGTCTGCTGCCAGTCTGTTTAGTTAGTTAACCCATCTCTTCCTGCATCAGACCACCATCACCCTCCTGCATCACACCCAGGCACCCTCCTCAGACACCTGGCCAATCGCTTGTTCTGAACAGCGTTACCATGGACACCGAGTCCACCCACTCTGGCTACTCCAACAGATCCAACAGACATGGggagcaGAGTCGGCGTGAGCGGCGTAAGCTCAGCAGTAAGGACAGCAGCCGGTCAGAGCGGTCTGTAATCATCAACAGCCCCTACGGGCCCACTCAGGCCTCCCCCAACCACAACAGCGAGCCCCTGCTAGAAGTCCCCAGCTCTGTGGCTGGAGACGAGGCTCCAAGCCTCCAGgATGATAACTGGGGGGAAACCACCACGGCGGTGACTGGCACCTCAGAGCTTAGTCTATCCCAGGAGGAGGTGGTTGGTCTGGGGAAGAGGTCAGAGGACGGCCTGGGGCAAGGCTGTCGGCGTTACGCTCCCCTAGCTCTGGGCCTCTGTGTGGGGCTACTGGTCCTGGCCACCCCTCTGGCCTTCCTGGTCCTCCCGGCGGTGCTGTGGCCGGCCAGGCTGCAGGCCTGTGGCTCAGCCTGCGAgggcctcttcctctctgtgtcctGTAAACTTCTCATCCTTCTGCTAGCTGTGTGGGCGATCTTCCTGCGCCAGGCCCGTGCCAGCCTgcccagggtgtgtgtgtaccgAGCCCTCCTGGCCATGCTCACACTGCTGCTCACAATCTCCTACTGGCTGTTCTATGGGGTCCGCATTCTCGACTCACAGGATGAGGACTACCAGGGTATCGTCCAGTTCGCTGTGTCTCTGGTGGACTCTCTGCTGTTTGTCCACTACCTGGCCATTGTTCTGCTGGAGCTCAGACAGCTCCAGCCCTGCTACAGCCTGTGTGTTATACGCTCCACTGACGGAGAGACACGCTACTACAACCTGGGACAGCTCAGtattcAGAGGGCAGCGCTGTCTCTGCTGGAGTTCTACTACAGGGACTTCCCTCTCCATAACCCTGCCCTTCTCTCCGCCTCCAAGCACCGTGCCGCCAAGCACCTGGCCGGCCTCAAGGTCTACACCGTGGACGCGTTTAAAGCTAAAGTGAGAGCTTACCTTTTGGACAATGACAGCCCAGTGAACCCAGCGGGGCCAGCAGGGGGATCAGGGGGATCGCAGGTGGGGGGTCAACCGCGGGCCATGATCTCTGCAGCAGCCAGGCGCAGAGACGCCACTCACAACGAACTATACTACGAAGAGGCCGACCATGACCGACGGGTCCGCAAACGCAGAGCCAgGCTAGTGGTGGCTGTGGAGGAGGCCTTCATGCATGTGAGGCGGATGCAGCAGGAGGAGCAGAAAGCATCCCCTGGGGATGTGATGGACGTACGGGAAGCGGCCCTGGCCATCTTCCCCTCCATGGCCCGCGCCCTGCAGAAATACCTCCGAACCACCAGAAGGCAGCACTGCCACAGCATGGACAGCATCCAGAGACACTTGGCCTTCTGCCTCACACACAACATGAGCCCCAAGGCATTCCTGGAGGCCTACCTGTCCCCTGGTCCTACGCTACAGTATGGTCGAGAGCGCTGGATGGCCGGTCAGTGGACTCTGGTCAGCGAGGCTGCGGTCACTAGCGGTCTAAAGGAGGACACAGTCTTCTCACTGAGGTGTCTAGATTTCAGCCTAGCGGTAACAGTCAAGTCCATCCCCTACATTGAAATGACAGAGGAGTACGTCGATCCAAAGTCACACAAGTTTACCCTGAGTCTCCAATCTGAAACATCAGTCTAACAGACGCATGTAGAAGAACTGTGGGAATTCTAGACTTGTCTTTTTTGAGTTCAGTTTCTTAAACCCTCTTTTACTTTGACATGCTATTTTGCTTTTGTCTTCTATTTATATTACCGGTGTTCATAAAGATTATTTTGGCTACTTTGAGATTTGTTATTGTACGTAATTGATATGAACAGATGCATATTGGATATTGTAACAAGATGAAGTGTTAGCTGGTCATATAATAGTTAATAAATGGTAGGGATCCCCAGCCCTATGGCTCTTTTGGAGTGAAGATGACCGATGGAGAGAGTTAGGGAACATGCTCTGATTTCTATTGTCCTGAGGCACACTGGAACATTGAATTATGTCAGCGGGTTTTCAATACACTGTAGATGACCCTCCCGCATTTTGttcttcctctgtgtgtgtgtgtgtctgtgtgtgtgtgcgtgtgtgtgtgactgtgtgtgtatgtagggggGTATTTTCATATGGTCTGCCCTGCTAATATGAATGAAATACTACCTAATAATCACAAACAGTTCAGGTTCAGTTTTATCAAACTAAGAATTGCTTTTCTTTACAGTTAATGGATTGTACATGTGTGTTTTTATatacggttgaagtcggaagtttacatacacttaggttggagtcattaaaactcgtttttcaaccactccacaaatttcttcttaaaaaactatagttttgtcaagtcggttaggacatctactttg

Function

NR:

description
vang-like protein 1 isoform X1

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04510 VANGL; vang-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579339.2 False 2804 mRNA 0.53 9 25945133 26001223
XM_021579338.2 True 2847 mRNA 0.53 10 25945133 26001224

Neighbor

gene id symbol gene type direction distance location
LOC110501636 LOC100194724 coding downstream 40739 25897760 ~ 25904394 (-)
LOC110501633 LOC106582109 coding downstream 53968 25844496 ~ 25891165 (-)
LOC110501632 LOC106582041 coding downstream 102166 25814821 ~ 25842967 (-)
LOC110501631 LOC106582111 coding downstream 145341 25791818 ~ 25799792 (-)
LOC110501630 LOC106582112 coding downstream 155832 25769933 ~ 25789301 (-)
LOC110501639 LOC106582104 coding upstream 9717 26010941 ~ 26013975 (-)
LOC110501642 LOC106582101 coding upstream 122546 26123770 ~ 26224797 (-)
LOC110502076 LOC106582039 coding upstream 293236 26294460 ~ 26299908 (-)
LOC110501645 LOC106582048 coding upstream 316011 26317235 ~ 26321085 (-)
LOC110501646 LOC106582100 coding upstream 387193 26388417 ~ 26447220 (-)
G1793433 NA non-coding downstream 25621 25919270 ~ 25919512 (-)
G1793356 NA non-coding downstream 131418 25811335 ~ 25813715 (-)
G1793361 NA non-coding downstream 137330 25806417 ~ 25807803 (-)
G1793380 NA non-coding downstream 204100 25740701 ~ 25741033 (-)
G1793377 NA non-coding downstream 207345 25737529 ~ 25737788 (-)
G1793593 NA non-coding upstream 119361 26120585 ~ 26120802 (-)
G1793594 NA non-coding upstream 120154 26121378 ~ 26121658 (-)
G1793720 NA non-coding upstream 128307 26129531 ~ 26129770 (-)
G1793721 NA non-coding upstream 128715 26129939 ~ 26130197 (-)
LOC110501627 LOC106582113 other downstream 233514 25709599 ~ 25744218 (-)
G1792433 NA other downstream 958865 24985959 ~ 24986268 (-)
G1792345 NA other downstream 1087248 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 1095381 24848591 ~ 24849752 (-)
G1791405 NA other downstream 1618006 24326729 ~ 24327127 (-)
G1794978 NA other upstream 1267438 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 1740148 27741372 ~ 27770708 (-)
G1795850 NA other upstream 1979440 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 2008431 28009421 ~ 28019116 (-)
G1796204 NA other upstream 2333000 28334224 ~ 28334621 (-)

Expression


Co-expression Network