LOC110501639 (LOC106582104)


Basic Information

Item Value
gene id LOC110501639
gene name LOC106582104
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26010941 ~ 26013975 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579340.2
TATTCCTCATGCTGCAGTCACTCCCCGCGAGGCTTTATTATGGGTTCGGCTCTTCTTATCTCTCACACAATCTGGCACGCACAAGAGAGTCAGCACGCGCGAAGGTGAGACACGAGCAGGCGGAAGGATTCCCTGTAATCGTTCCCCTCACAGAAGAATGGTCCCTGGCATGCAGTTTACTAAAGCCCATCATAATATCACGGAAAAACAAGGCGGACTAAAGGAGTCACTCTCTCCACGAGCGCACCCTCTCCTCACAACAACCTCATTTGTTTTCTTCAGCGGAGGTCAAGAGACAACACTTAAGAAAATCTGTCCTCAAACAATCAAGTGATGCTCAAATGAAAAAAACGAAAGTACGACAACAGAAACACCTGTCGTCCGCTTATAATTAGTTAATGGACACGTAAAATCGTTTTGAATAGACTAACATCTAATTTGAAGTTGGTCTCACCTATAAtcaaatacatgttgatgagaaggGTTGGAGATGTGTGACCGTGGGTGACACCAACGAGAGTTTTTACAGTGGAAATAACTCCTCAGGGGTGCACCCTTGGATAAAGTTGAGCAAATTAAAATTGGGGTTGAACCTTTGATCTGAAAACAGACCACAAAACAGACGGCCTGAAGATGATGCTGAGTCCTGACCAGCCAGACGTTGACCTGCCCTGGGGGCAGCCCGACACAGAGACCCTGCTGAACAGCATCAAGATGGAGTGCGCCCCCCTGCCCGCGGAGCCCGCAGAGGGCGAAGGCAAGGCGCGCTCTCTGTCCATTCCTTCCCTCagcagggaggagaagaggaggcggaggcgCGCTACAGCCAAGTACCGGTCCGCGCACGCAACAAGAGAGCGCATTCGCGTCGAGGCTTTCAACGTTGGGTTCGCCGAGTTGAGGAAGCTTCTCCCGACACTTCCGCCAGACAAGAAGCTGTCCAAGATTGAGATCCTCCGGCTCGCAATCTGCTACATCACCTACCTCAACCATGTGCTGGATGTGTAGGTCATCAGTCAAGGATGGACACCGTCagtgaaggagagaagaagactgAAGATGGAGACTGGGTAGGGTGGACTGCATACGAATGCTTGATAGACATTGTTGACACATATCTGGCCTGGGAGCACTGCTGTGCCTGTAGTGTGTGCCCAAGTGCCCTGTGTGCTGCCACTCTAGGCCAGAGTCACACAGTAAAACAGGACCTaatgtccttctctttctcagtgTTGTGAAGGAAAGAAACTGCTGCCCCACTGGACTTACCCACAGACTTACCCAATTGAATCCAAATTTGCAGTGTCAGAAAACGCAATAATGTCGGGTGATCCTACTTCTTATAGGTTTATTAGCCTAGTATTGAAAAGCTGTCCTGTTAGCCAATACTTACCATGGCGAAACTTCTCTCCGGACAGGGCTGATTTAAAGGATCTGTAGCTGTAGAGATTCGCTGAAATCAGTGATGAAGTTCAAAGTAGAATATAAGTGCCACTTATTTACAGATATGATATGTTGTATATTATATTCgttatttgtttttgtattaGGCTTAGTAAGTTACGTATTTATCAATTCATGTTTACATTGTAATGTCTTATGTCTGGTGTTTGCACATACatatttatttgtaatatatATAACAATTATTTATACTCTGACAACAGAACAAATACTGTTGCTCTTTATTGCACTTTTTAATCGGATTTTATCTATTAAAGATTTCCCAAAATGTTTTTGAAATCCCTGTTAAATCCAGAGGTTGCAAGTGAGATTGCAGTGTTTTGTTTGGTAGGGTGAGACACAGTTTCAGCTTTAGGCCTACAATTTCATTATTAGCTTTTTCGATTGTCCAGAAGTTTGTTGGTTTCATGTTCAGCTTTTAAGGACAATAACATTTTTTTTCTGTGACAAACTCCATAGTTTACTTTAGCCAATACGTGCTTTCCAAAGATTGCTTAACATTTCAGGGTGTCCTTTTGTAGTATGCCATATATAACACACCTAAACAGCTTTTgttaataaattaataaattgttaatacatttttttatcttAAA

Function

NR:

description
helix-loop-helix protein 2-like

GO: NA

KEGG:

id description
K09075 NHLH, HEN, NSCL; nescient helix-loop-helix protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579340.2 True 2060 mRNA 0.44 2 26010941 26013975

Neighbor

gene id symbol gene type direction distance location
LOC110501638 LOC106582105 coding downstream 9717 25945133 ~ 26001224 (-)
LOC110501636 LOC100194724 coding downstream 106547 25897760 ~ 25904394 (-)
LOC110501633 LOC106582109 coding downstream 119776 25844496 ~ 25891165 (-)
LOC110501632 LOC106582041 coding downstream 167974 25814821 ~ 25842967 (-)
LOC110501631 LOC106582111 coding downstream 211149 25791818 ~ 25799792 (-)
LOC110501642 LOC106582101 coding upstream 109795 26123770 ~ 26224797 (-)
LOC110502076 LOC106582039 coding upstream 280485 26294460 ~ 26299908 (-)
LOC110501645 LOC106582048 coding upstream 303260 26317235 ~ 26321085 (-)
LOC110501646 LOC106582100 coding upstream 374442 26388417 ~ 26447220 (-)
LOC110501648 LOC106582099 coding upstream 485628 26499603 ~ 26516319 (-)
G1793433 NA non-coding downstream 91429 25919270 ~ 25919512 (-)
G1793356 NA non-coding downstream 197226 25811335 ~ 25813715 (-)
G1793361 NA non-coding downstream 203138 25806417 ~ 25807803 (-)
G1793380 NA non-coding downstream 269908 25740701 ~ 25741033 (-)
G1793377 NA non-coding downstream 273153 25737529 ~ 25737788 (-)
G1793593 NA non-coding upstream 106610 26120585 ~ 26120802 (-)
G1793594 NA non-coding upstream 107403 26121378 ~ 26121658 (-)
G1793720 NA non-coding upstream 115556 26129531 ~ 26129770 (-)
G1793721 NA non-coding upstream 115964 26129939 ~ 26130197 (-)
LOC110501627 LOC106582113 other downstream 299322 25709599 ~ 25744218 (-)
G1792433 NA other downstream 1024673 24985959 ~ 24986268 (-)
G1792345 NA other downstream 1153056 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 1161189 24848591 ~ 24849752 (-)
G1791405 NA other downstream 1683814 24326729 ~ 24327127 (-)
G1794978 NA other upstream 1254687 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 1727397 27741372 ~ 27770708 (-)
G1795850 NA other upstream 1966689 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 1995680 28009421 ~ 28019116 (-)
G1796204 NA other upstream 2320249 28334224 ~ 28334621 (-)

Expression


Co-expression Network