LOC110502076 (LOC106582039)


Basic Information

Item Value
gene id LOC110502076
gene name LOC106582039
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26294460 ~ 26299908 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110502076
ATGGGTTGCGTCAAGCAGTACCAGTGGAGGACCAGTCTCCTGTTCTTCTTGAGTGGACTCATCCAATGGGGCGGGGCTACGGTGCTTGTGGAGGTGCAGTCTGGCCCTCTGTATCGTGTGATTGGCTACCCTTTCTTCATGTCCTGCAACGTGAGTAGTTTCTCTAACCAGGCAGCCCGGCAGGACTTCAGAATCTCCATCTACAAGCCAAACAGACCCACCTGTGAAATACAGATCATCAGCACAGACGACAACAACTATGCCATGGCGTCCGCGTCAGGGGCGGTGGCATCACTCTGGAGTGCCGGTCAGTGACTTCGGTCCTCTTCCACGTGAAGAGTCTGGAGGAGGGGAACGAGGGCGAGTATGAGTGCCTCACCCCAAACTCAGAGTTAGAATATAACGGGACGTACAATGCTAATGCCACATTGAAGGgtaatATAGTGATCAAGGACACCCTGACCACCTCCTACACTGGCCACGCTTCCTTCAGCCTGTCAGAGGGGGTTGCCCTAACCCTGCAATGCCTCGCTTCCAGCAACACCTTCCAGCACACCCACCTGTCCGTCACCTGGTATCTCCATGGAGACGGGAGGCCTTGCCCCACCCCATCATCTCTCTGGACTGTGATTTGACGGTGAGTCTGGGTCAGGGGTTTGAAGGACGGTACCAGGCAGTGTTCATTGGTCTGGACATGCTGGAGGAGGCCACATACAGGCTGAAGATGGCCAGGATTTAGCTGTCCGATGCAGGGAGGATCTACTGCCATGCCCAGGAGTGGATCCAAGACCCAGACCTGAGCTGGTACCCAATCTCCCATAAAGACGCACAGGCAACCACGTTGCCAGATTGGGCCAACTGGCATCCTGTCTGTGGGGCCGGAGtacggtgggagagagagcgggggcgAGCTGAGAGCTGTGCGGACGGGGGAGAAGACACACCTGCTTACCCTGCGGCCCAGAGGTTTGGCCGTTGCCATGGAGAACCAGAAGGTGAGCGTTGACGAAGGGGACGAGCTACAACTCGCCTGTAGAGTGAGCGGGGTCAAGGGTCAGCTCTCCGTCCCCTGGAAATACAGATCAGCCTCCACGACAATGGGCCCTTCCCGCGAGGGGGGGTCGGCCCCGGACAACATCCTGACACTGTTGCACACCGGTGACATCATGTGGCGCGGTGACCAGAGTAACTACCAGTTGAGGGTGACCACCAGCAAGGGGGAAGTGCATCACATCCTCTGCATCATCAGAGCAAGCCGCGGGGAGGCAGGGTGCTATCAGTGTGTGATCTCAGTGTTCCTGCAAGGGAGACACAGGAATCCGCAGAACTCCAACCTGCTGGCTGTGTTGGTCCAGACTCTAGagGGTGTACTTACCCTGTCCTCTAGCCCCTCCCCTCTGGATCAGACCATCAACGCAGTCATACAGACGGAATGCTCCGTTGTCAAGGCAACTTCTAACTCATCCCGCTTCGCTGTCACCTGGTTGGCCCAGAAGAAGGGGGTGGGGAACCAGACCGTCCTCAGCTCAGACCGCGATGCAGTGATAACACTAGGGGCGGAATTAGGCACAGAACAGCGAATCAGTATGAGAAGACGTGAGAGGTGTAGCTTCGAACTAACCATTCGACAAGCCCGTAGCTGGGACAGGGGGAGGTACTACTGTGTGGTGGAGGAGTGGCTACAGGATCCTCACGGCGTATGGTACAAGCTACTACATGGTACAAGCTCCTCTTCTGCAGCTATGGAACTCCGCCTACAAGAGACGGGTGAATTATtctctctctttctgtctctatgtctctctctcccagtgagTGACCTCAGTGTTAACAAGACAGATCTGGACATGGAGGTCAGAGATGGGAAGCGGGTGGAGCTGACCAGCACTTTGACCTCAGGTGACCCTGCCTCTCTCTACGCACTCACCTGGTTCTACATGAGGCgtggctcctcctcctctcacagggTGACCCTGGTGATTCTAGGCCATGATGGCACCCTGAAATACCCAGATGACAACCAAGGGCTCCAGGCCCAGAAGGGGAGGCTGATCTTCTCCAGGAACACTCATGGTACCTTTCTGCTGGGTCTACAGGGAGCTCGTCAGGATGACAGTGGAGTTTACCAGTGCAATGTGGATCAGTACAAGTACAGTCATGACGGCAACTGGGAATGTAGTGCCTCCAACCAATCAGGCAGAACCAACCTCACTGTATGACGACCAATAGGTATGATGTCATAATTTATGAGTCCATGATGTCGGACTATACAAATACAACTGAATCACAATCTGTTGGTTTTTATCTTaccttcctctgttctctccctctccagaacTTGAGTCTGAGTTGCTGTCTGAATCAGAATTCCCCACTGGATTAGTTATACTCATCTTCATCCCTCTTGTCTGTATCCTGGCAATTGTCATCATGATGCTGTCAATCAAGCTGAAGGGGCGGGGTTCAGCTGGAAACAAGAAACACGCCAACTCTCTGTGGGTGGAGGAAAACCCACTGAAGCCATGCCCAGAagaatgagaacagaggagaggtgaggagggagatagagagaggatg

Function

NR:

description
PREDICTED: immunoglobulin superfamily member 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110502076 True 2577 mRNA 0.54 7 26294460 26299908

Neighbor

gene id symbol gene type direction distance location
LOC110501642 LOC106582101 coding downstream 69663 26123770 ~ 26224797 (-)
LOC110501639 LOC106582104 coding downstream 280485 26010941 ~ 26013975 (-)
LOC110501638 LOC106582105 coding downstream 293236 25945133 ~ 26001224 (-)
LOC110501636 LOC100194724 coding downstream 390066 25897760 ~ 25904394 (-)
LOC110501633 LOC106582109 coding downstream 403295 25844496 ~ 25891165 (-)
LOC110501645 LOC106582048 coding upstream 17327 26317235 ~ 26321085 (-)
LOC110501646 LOC106582100 coding upstream 88509 26388417 ~ 26447220 (-)
LOC110501648 LOC106582099 coding upstream 199695 26499603 ~ 26516319 (-)
LOC110501651 LOC106582096 coding upstream 234326 26534234 ~ 26567495 (-)
glra2 glra2 coding upstream 286730 26586638 ~ 26597980 (-)
G1793721 NA non-coding downstream 164263 26129939 ~ 26130197 (-)
G1793720 NA non-coding downstream 164690 26129531 ~ 26129770 (-)
G1793594 NA non-coding downstream 172802 26121378 ~ 26121658 (-)
G1793593 NA non-coding downstream 173658 26120585 ~ 26120802 (-)
G1793842 klhl6 non-coding upstream 3476 26303384 ~ 26304276 (-)
G1793874 NA non-coding upstream 36524 26336432 ~ 26336659 (-)
G1793875 NA non-coding upstream 37782 26337690 ~ 26337921 (-)
G1793934 NA non-coding upstream 73437 26373345 ~ 26373547 (-)
G1793945 NA non-coding upstream 81370 26381278 ~ 26381533 (-)
LOC110501627 LOC106582113 other downstream 582841 25709599 ~ 25744218 (-)
G1792433 NA other downstream 1308192 24985959 ~ 24986268 (-)
G1792345 NA other downstream 1436575 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 1444708 24848591 ~ 24849752 (-)
G1791405 NA other downstream 1967333 24326729 ~ 24327127 (-)
G1794978 NA other upstream 968754 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 1441464 27741372 ~ 27770708 (-)
G1795850 NA other upstream 1680756 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 1709747 28009421 ~ 28019116 (-)
G1796204 NA other upstream 2034316 28334224 ~ 28334621 (-)

Expression


Co-expression Network