LOC110501645 (LOC106582048)


Basic Information

Item Value
gene id LOC110501645
gene name LOC106582048
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26317235 ~ 26321085 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579346.2
CAGAgcgctcacagacacacagacacagtctggAGCAGGTGCAATCACTCCGTGAGAATGTCAGTGGTGATGCTGATATCTCTCATCCTCCTCGCTCTGGGGTTTGCAGGTGCCGAGGAGTGTACTATGTATGCTGCTGTTGGGAGGAACAAGGTGATTGACCATGGCCTGGAGTTGCTTGGACAGTCATTTCACTTACGGTGGTCCCATGACGATAAGATCGTTTACGACACCAGGAAGAATACTGAGTCAAAACCCCAGACCACACCGAATGGTTCTCTGTTACTAACTAACCTACAGCTGAATAATACAGGGCCTTACCAGGTCACCATCTACGACAACGCGGGAAAACTCGTGTTAGAAAAAATAACTCACCTGTGTGTGCTCTCGCCTGTGTCTAAGCCACGTCTGACACACACCTGTACGGATGCATCTGTCAGTCTGAGGTGCGATGTGGGGAACTCTGTGGATGTTAACGTGGTGTGGAGCCGTAACAGACAAACACTGACAGGATCCACTGACAAAACTCTGACAATAACCAAGGCAATGCTGAAATCTGTAGACCTCTACGTGTGTACAGTGAGTAACAAAGCCAGTGAAGAGAAGAGTGACGATGTTAACCCTGAATGTGCAGAGGATTCTTCCTCTACAGTGCTCTTGTTTGGGATGAAGCTATGGCTGATGGTGGCGATTCTGGCTGGTGGAGGTGGTCTGCTCCTCATCCTCATCGTTATCACCTTGGTGTGTGTCTGCCAGAGCCGCAGGCGGCGCGCGAGTCGCATAAAAGaagaggaggagatgagactTGCACCCCTCACCCAGCCCATGCGTCAAgcatccctccaccaccaccatcacccacaCAAGTCCCAGAGCCGAAGCCGGCCGAAAAACAGAACTCCGTCACAGGCCACCCAAAACTCCAGACCAGTGCCTCGACCCAGGTCTCCACAGCCTAAACCAGATAATGCACCGCCCATACCAATTCCCAGGCGGACAGGACCCTGGAACCACAggagttaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggggggggggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggcgccTGCATGCTTGCATTCTTGTTAACCATAGCAACCCCTGTAGTCACACAATGGTTCAAACTTTGATTGCAGCAGTTACAAATAAAGAGCAGTGCTTCACCACTTGTGTATGTGTCAGA

Function

NR:

description
T-cell surface antigen CD2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579346.2 True 1281 mRNA 0.52 5 26317235 26321085

Neighbor

gene id symbol gene type direction distance location
LOC110502076 LOC106582039 coding downstream 17327 26294460 ~ 26299908 (-)
LOC110501642 LOC106582101 coding downstream 92438 26123770 ~ 26224797 (-)
LOC110501639 LOC106582104 coding downstream 303260 26010941 ~ 26013975 (-)
LOC110501638 LOC106582105 coding downstream 316011 25945133 ~ 26001224 (-)
LOC110501636 LOC100194724 coding downstream 412841 25897760 ~ 25904394 (-)
LOC110501646 LOC106582100 coding upstream 67332 26388417 ~ 26447220 (-)
LOC110501648 LOC106582099 coding upstream 178518 26499603 ~ 26516319 (-)
LOC110501651 LOC106582096 coding upstream 213149 26534234 ~ 26567495 (-)
glra2 glra2 coding upstream 265553 26586638 ~ 26597980 (-)
LOC110501655 LOC106582091 coding upstream 393612 26714697 ~ 26752657 (-)
G1793842 klhl6 non-coding downstream 12959 26303384 ~ 26304276 (-)
G1793721 NA non-coding downstream 187038 26129939 ~ 26130197 (-)
G1793720 NA non-coding downstream 187465 26129531 ~ 26129770 (-)
G1793594 NA non-coding downstream 195577 26121378 ~ 26121658 (-)
G1793874 NA non-coding upstream 15347 26336432 ~ 26336659 (-)
G1793875 NA non-coding upstream 16605 26337690 ~ 26337921 (-)
G1793934 NA non-coding upstream 52260 26373345 ~ 26373547 (-)
G1793945 NA non-coding upstream 60193 26381278 ~ 26381533 (-)
G1794009 NA non-coding upstream 77506 26398591 ~ 26402840 (-)
LOC110501627 LOC106582113 other downstream 605616 25709599 ~ 25744218 (-)
G1792433 NA other downstream 1330967 24985959 ~ 24986268 (-)
G1792345 NA other downstream 1459350 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 1467483 24848591 ~ 24849752 (-)
G1791405 NA other downstream 1990108 24326729 ~ 24327127 (-)
G1794978 NA other upstream 947577 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 1420287 27741372 ~ 27770708 (-)
G1795850 NA other upstream 1659579 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 1688570 28009421 ~ 28019116 (-)
G1796204 NA other upstream 2013139 28334224 ~ 28334621 (-)

Expression


Co-expression Network