LOC110501647 (LOC106582098)


Basic Information

Item Value
gene id LOC110501647
gene name LOC106582098
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26465197 ~ 26498036 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579350.2
tctctctctgccgatGAGTGTTTGCTGCGGTCTCTTCGTTTCATTCTCAGAATCGCCGGAAACTCTATTCCACACATCCTCAGCTTTATTTAGACCTCAAGCTTCTTTAAACTTTACATCCCACACAAACATTCGCGAGGAAATATATTTTAGACCGTTTATGTTACCTTCGGAACGCAGAGATTGCACCGGTGGTCAGAACTTGAATTATGATAAGCAAAATGGGAGGAAAGTCGTTTCTTGCTCACTGAAGTTGGGGGCTATCCAAGTGGAAGAGGTGGCGGCAAGTCGGCAACACCACAAGCTCACTCTCTGAGAAAGaCTGAGTCCATCTTTACTACGTACAGTACCTCCTCCATCGAGGTGGGCTAAGATACAGTACCTCCTCCATCGAGGTGGGCTAAGATACAGTACCTCCTCCATCGAGGTGGGCTAAGATGAGTATAACCAGTGATGAAGTTAACTTCTTGGTCTACAGATATCTTCAGGAGTCAGGTTTCTCCCACTCAGCGTTCACCTTTGGAATTGAGAGCCACATCAGCCAGTCCAACATCAATGGAACTCTAGTGCCCCCTGCTGCCCTCATCTCCATCCTGCAGAAAGGCCTCCAGTATGTGGAGGCAGAGATCAGCATCAATGAGGATGGCACAGTGTTTGATGGGCGGCCCATCGAGTCTCTGTCACTCATCGACGCGGTGATGCCGGACGTGGTACAGACGCGGCAGCAGGCCTTCCGCGACAAGCTAGCCCAGCAACAGGCGGCCGGCAGCATGGCAGTTGTTGCCGCTAGCAACCAACTTAATGCAACAAAGAACGGAGAGGCCACCGTGAACGGGGAGGAAAACGGAACACACACCATCTATAACCAGAGCGAGCCCATGGAGATGGATGTGGACGTGGAGATCCCAGCTAGCAAGGCCACGGTCCTCCGAGGTCATGAGTCAGAAGTGTTCATCTGTGCCTGGAACCCTGTCAGCGACCTGCTGGCCTCTGGGTCGGGAGACTCGACAGCCCGGATCTGGAACCTTATTGAGAACAGTAACAGCAGCTCCACCCAGCTGGTGCTCAGACACTGCATCAGGGAGGGGGGCCAGGACGTCCCCAGCAACAAAGACGTCACCTCACTAGACTGGAATAGCGATGGGACACTCTTAGCAACCGGATCCTATGATGGATTTGCAAGGATATGGACAAAAGATGGTAATCTGGCGAGCACCTTGGGCCAACATAAAGGACCCATATTTGCACTGAAGTGGAACAAGAAAGGGAACTGTATCCTCAGTGCTGGTGTAGATAAGACGACaatcatttgggacgcacacacaGGAGAGGCTAAGCAGCAGTTCCCCTTCCACTCAGCTCCAGCCCTGGACGTGGACTGgcaaaacaacacaacatttgCCTCCTGCAGCACAGACATGTGCATCCACGTGTGTCGACTGGGCAGCGACCGGCCGCTCAAGACCTACCAGGGCCACAcgAATGAAGTCAACGCTATTAAGTGGGACCCGTCAGGGATGCTACTAGCCTCCTGCTCTGATGACATGACTTTAAAGATCTGGAGTATGAAGCAGGACTCATGTGTCCATGATCTCCAGGCCCACAGTAAAGAGATCTACACTATCAAGTGGAGCCCCACCGGCCCAGGCACCAGCAACCCCAACGCCAACATCATGCTGGCTagTGCCTCGTTTGACTCAACTGTGCGTCTGTGGGATGTGGAGCGAGGTGTGTGTAtccacaccctgaccaaacaccAGGAGCCCGTCTACAGTGTGGCCTTCAGCCCTGACGGGAAGCACTTGGCCAGCGGCTCCTTCGACAAGTGTGTCCACATCTGGAACACCATGACTGGAGCCTTGGTGCATAGCTACAGGGGGACCGGAGGGATTTTCGAGGTGTGCTGGAACAGCACAGGAGACAAAGTTGGTGCTAGCGCTTCAGATGGATCAGTATGTGTTCTTGATCTCAGAAAATAGCATCCTGGCAGTGACTTTGAAGTTGGACCCTGCCATCAGCAAACACTCTCATAGCTCAAAGCAGGCCTGGCAACATGGAGGACATCCTCATAGGGCGGACACAGGAGACATTTTAACAACCACAAACTACTTAATGGCAGAGGCAATCCTCAGTTTGTGGATTTGTGTCTCCTGTTTAAGACCACAAAGAACATTTCCTGGGTTAATTAACATACTGGACGAAATCCATTTTTTTTTGTTCAGCCATGTTTTAAAAGGTGCCTAAAAGGTGCCCTGCTGTTATCTGGCTATGGTCTGAATCATGAGGAAGAGGGTTTGAATAGGAAGAGGTGTGAGGAGAGACAGACTGGTGTTTTGGGTGTGTTTGACATGAAATTGTGAGAGAAAGGTTGTGTTTTAGAACCTATCTAAGCACATGTTAGCCCTATGGTGTCCTGAGTTGAGAAACAATATGGGAGACATGAGGAGAGTGACATTGTTATTGCTGCACTGGCATTCTCAAATTATGTGATGTTTAAATTGTCCTCAGTGGAGAATAGTTCCTGTTTAAACAGTACTTCTTGCAGGTTTTTCACAAACGGACTTCTGAAAGTCCGAGTTAAAAAAGGTGCCGCTATGCGGTAGTTCTGTGCTCGCATTTAATAACATCAAGGTCAACCAAAATCACCAAACTGCCAAGTTTAACTTCTCTAAGTTTGAATGACATTTAATTCACTTTAAAAAGAAAATATGCAAAAAGCGTGGTTTATAAGCATATATTCTCCCTTCTGGATGTACATTTAATGAATGTAAAGATATGTAAATTAGAAAAATACACAGActtatatactgtgtatatatgtttatatTCAGTACACTTTAACGTAATCTTCTAGACGCTCAATACTGGCTTGAGCTATCACATCTTTTCTTTGCTGATACTCGGTTACAAGACCCTGATTCAATTTAATGCACGTCAGATAGATGTTTCTTTTGTTACCATGTATGTTATTTTATTCTGACAATTATGTGTGTATCAGGTTGGTGTGTTAAGTCAGGTGGTGCTGAAGTGGACTGTAGTCATTTCACTGATGGCTCTTTACACTTTAAGCCATGGAGATCTGTGCCTCAACGTAACTGAATGGACCATGGGTAATGATGAATGGGATAAAGATGGGATGTTACATTCTGTAGGCTCTACCTGTTTTGTCGGGGTTACCCCTGGCTCAGGTCTGGGATGTGAAACAGGACCTGTCTGTATTCAGCCCTAATGACAACCATTGAAATGGAAATCAGAACAGACAGAGAGCATGCTGATTGAGAAGGAGAGGATGCTGTGAACATTTGTATTGTGTTGTCTTAATGTTGCTTTAGTAGCAGTGTCATCACTAGTCATCTACTGAGCTTTTCTTACAGTACTCCTTTGTTTGGCAGGGTGATCGTTCTGGTGGAAACCCAAGTTACACGCTGACTGATCAACCAGGCTCTGATTGGTCAAATGGAAGTCCTACTGTAGCTTCTAAGCTGTGATTGGTTGAGTTGGGTTGAGGTCCCGACATTGCCACCGCCTGATCTAATTGGTCAGATTGGACTTATTTGACTTGCCTGTATGATGGATTTAGCTTTGTGTGCAGTATGTCTACTTGTACTTATCGTGGTCTAACGTGACAGTCTTTTCAAACTAACAAGCCACCAATTTGAGAATGCCTTTTTCTGGTCCATTCTTTCAGTCAAGCTCATTTTCAGAAGGTAGGCTCAGCTTTTGTTTGGATTTGTGCTGAAAGAGGAAGGCCagcattttatttcattttttttatatatataaataatccgGCGTTAATGTTTTTTTGCTGAGAGCCAATATTGTCTGTGTCAGACTGAGAATCGGGCTATGGTTGGTGGCCATCTTGGCATGTTGAGAAGCCCAGTGTGGAATAAAATGCTGTGACTGACAGCGATCTCTCTCCTACCCCAGTCTAGGATATGGTCATCTGTTTCCAAGACTAAACAATGAATTCACACTCAATGTCTCAAATAAATCACTCTATTTTGATATGAGAAAACACTG

Function

NR:

description
F-box-like/WD repeat-containing protein TBL1X

GO: NA

KEGG:

id description
K04508 TBL1; transducin (beta)-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579350.2 True 4026 mRNA 0.46 15 26465197 26498036

Neighbor

gene id symbol gene type direction distance location
klhl6 klhl6 coding upstream 158016 26301139 ~ 26307181 (+)
LOC110501641 LOC106582040 coding upstream 354681 26107150 ~ 26110516 (+)
LOC110501640 LOC106582103 coding upstream 402704 26054030 ~ 26062493 (+)
LOC110502075 NA coding upstream 429458 26031487 ~ 26035739 (+)
LOC100301670 LOC100301670 coding upstream 525077 25933978 ~ 25940120 (+)
LOC110501649 LOC106582097 coding downstream 19818 26517854 ~ 26524950 (+)
fancb fancb coding downstream 69719 26567755 ~ 26577035 (+)
LOC110501654 LOC106582092 coding downstream 187926 26685962 ~ 26711540 (+)
LOC110501656 LOC106582038 coding downstream 266413 26764449 ~ 26796450 (+)
parp4 LOC106582088 coding downstream 438655 26936691 ~ 26967319 (+)
G1793954 LOC106582100 non-coding upstream 18022 26414901 ~ 26447175 (+)
G1793935 NA non-coding upstream 91133 26373812 ~ 26374064 (+)
G1793929 NA non-coding upstream 94486 26370503 ~ 26370711 (+)
G1793865 NA non-coding upstream 135499 26329473 ~ 26329698 (+)
G1793650 NA non-coding upstream 213390 26204180 ~ 26251807 (+)
G1794057 NA non-coding downstream 492 26498528 ~ 26499393 (+)
G1794031 NA non-coding downstream 1649 26499685 ~ 26500255 (+)
G1794058 NA non-coding downstream 2634 26500670 ~ 26500884 (+)
G1794177 NA non-coding downstream 182972 26681008 ~ 26681432 (+)
G1794179 NA non-coding downstream 184657 26682693 ~ 26682923 (+)
G1793717 NA other upstream 148954 26315826 ~ 26316243 (+)
G1793045 NA other upstream 733443 25731326 ~ 25731754 (+)
G1792649 NA other upstream 1168640 25294546 ~ 25296557 (+)
LOC110501609 fam155a other upstream 1451542 24848514 ~ 25013655 (+)
G1792040 NA other upstream 1621912 24842942 ~ 24843285 (+)
G1795411 NA other downstream 1405546 27898367 ~ 27912875 (+)
LOC110501693 LOC106582057 other downstream 1538892 28036917 ~ 28052019 (+)
G1795550 NA other downstream 1593529 28091565 ~ 28092116 (+)
LOC110502085 LOC106582160 other downstream 2479854 28977890 ~ 28984226 (+)
LOC110501700 LOC106582186 other downstream 2510588 28997763 ~ 29010281 (+)

Expression


Co-expression Network