LOC110501648 (LOC106582099)


Basic Information

Item Value
gene id LOC110501648
gene name LOC106582099
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26499603 ~ 26516319 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579352.2
CCTGACTGGAAGAATTAAATAGAAGCACATGATGATTCAACCCGTGATTTTCACTTGAAACAGACCTCATGCCACGGACTAAATTAATGAATTTTCCTTTATTTTCTCCCCTGACACCGTAGCCTGCTTCTTTCCATCGAGTCCATGATGGCATCCCCAAGGCTGGAGACGTTCTGCTGCCCAAACCGAGACGCATCGACCGAATTTGTCATTACTTTTCAGCCCCTCTTCTTTGGCGCCATTTGCATCGGTAGTGCAAGTTTAAGTTTCATATTTTCTATTTTACAAATTTTGCCCAAACGTAGGGGTTACAGGCGCCTTGGACAGTACCCTCTTCCCAAACCAGCGTCTTCGTCGAGAATATTGTTTATCATCAGCATATGTGATATACTGGGATGTGCAGGTATCATAGTGAGGTCATCCATCTGGCTGGGCCTGCCCAACCTTGTCAGAGGGATCAATGTGGCCAACAACAGCGACATGTGGCCAGAGGTGTTCTGTGTCGGCAGTGCAATGTGGATCCAGCTGTTCTTCAGTGCATCCTTCTGGTGGACCTTCTGTTACGCTGTGGACGTCTTCCTGGTGGTCAGAAGATCTGCAGGAATCAGTACCATCATCCTCTATCACATGATCACATGGGGTCTGGCCGTGTTGCTGTGTGTGGAGGGTGTGGCTATGCTCTACTACACATCCATCTCCAGCTGCGAAAATGGCCTGCAGCATGCCATTCCTCACTACATTACTACCTACGCTCCTCTAATGCTGGTGCTTATAGTCAACCCTACACTGTTCGCCAGGACTGTGTCTGCAGTGACAGCATTATTGAAGGGACGACAAGGGATCTACACAAAAAACGAGAGACGCCTTGGAACAGAGATAAAAATACGCTTCTTCAAAATCATGCTGGTCTTCTTTATTTGCTGGCTTCCCAACATCATCAATGAGAGCCTGCTGTTTTACCTGGAGATGCAGACGGACATAAAAGCCAGTGACCTGAAAAATATACGAAACACAGCCCTCATCACTTGGTTTATCATGGGGATCCTGAACCCCATGTCAGGCTTCCTCAACACGTTGGCCTTCCATGGCTGGACGGGCTTTGATGTGGACTGCAGCCTGCAGAGGAGAAGGGAGCTGGCCTGGGATTCAGCCTCCACCTCGGCGGCTAACAACCCCATCGTGGGCTCCACCCTGCTCTACCAGAGCCACGTCCAGGAGGCCAAGAACATGACCGGCAAGAACATCAAGGGCAATGGGCAGCCAGCCTCTGACGCCATCAGCGTCCTATCAGAAGGTTCAGAGTCTAGTACAATTGAAATCGACATTTCCACTGAGCACCAAGACTATGAGGATATAGACGCAGATGGAGAATCATTGGGGAGTTCTGCAAGGCACTAGCTGCTGCATCACCTGCTGCCAGCCTCCATCTTGTTTTGTCTCTCCCCTACTGAGTTTTAGACCCTGTCCCCATCCGCTGTTTGAAAAACCTCAACTCAGACACCTCTTTGGATCCAACAGCAGTGTTAAAAATGATCTGTCTACCTGTACCATTTCATTTATTTCGCTCTTAAGAACTGCCATTTAATTACTGCTGTAGCACAGTCATAGGCTTGATGTTGTCACAGAACAACATGACACATTTGGCCACCAGTCTGCTCCTCATATGTCGTGACGATACATAACAGGACCAGTTAATTTGCCTCATCACTGAACTGGGTGGGAAAATCTATgtgttctatttctttgttggccgggtatggttcccaatcagaggcagctgtctatcattgtctctgattggggatcatacttaggcagcctgttttccacctgagtttgtgggatcttgattttgttaGTTGCTGTAttagcctgcagaactttactttcgtttatctttttttttttttttggtgttcatcaaaataaagaaagat

Function

NR:

description
G-protein coupled receptor 143-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K08470 OA1, GPR143; ocular albinism type 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579352.2 True 1937 mRNA 0.47 9 26499603 26516319

Neighbor

gene id symbol gene type direction distance location
LOC110501646 LOC106582100 coding downstream 52383 26388417 ~ 26447220 (-)
LOC110501645 LOC106582048 coding downstream 178518 26317235 ~ 26321085 (-)
LOC110502076 LOC106582039 coding downstream 199695 26294460 ~ 26299908 (-)
LOC110501642 LOC106582101 coding downstream 274806 26123770 ~ 26224797 (-)
LOC110501639 LOC106582104 coding downstream 485628 26010941 ~ 26013975 (-)
LOC110501651 LOC106582096 coding upstream 17915 26534234 ~ 26567495 (-)
glra2 glra2 coding upstream 70319 26586638 ~ 26597980 (-)
LOC110501655 LOC106582091 coding upstream 198378 26714697 ~ 26752657 (-)
LOC110502078 LOC106582090 coding upstream 289099 26805418 ~ 26913306 (-)
LOC110501658 cenpj coding upstream 406521 26922840 ~ 26933846 (-)
G1794100 NA non-coding downstream 1593 26495978 ~ 26498010 (-)
G1794101 LOC106582098 non-coding downstream 8082 26483269 ~ 26491521 (-)
G1794009 NA non-coding downstream 96763 26398591 ~ 26402840 (-)
G1793945 NA non-coding downstream 118070 26381278 ~ 26381533 (-)
G1793934 NA non-coding downstream 126056 26373345 ~ 26373547 (-)
G1794528 LOC106583515 non-coding upstream 2803 26519122 ~ 26581313 (-)
G1794527 LOC106582097 non-coding upstream 7751 26524070 ~ 26524927 (-)
G1794633 NA non-coding upstream 195080 26711399 ~ 26712490 (-)
G1794663 NA non-coding upstream 244213 26760532 ~ 26760738 (-)
LOC110501627 LOC106582113 other downstream 787984 25709599 ~ 25744218 (-)
G1792433 NA other downstream 1513335 24985959 ~ 24986268 (-)
G1792345 NA other downstream 1641718 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 1649851 24848591 ~ 24849752 (-)
G1791405 NA other downstream 2172476 24326729 ~ 24327127 (-)
G1794978 NA other upstream 752343 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 1225053 27741372 ~ 27770708 (-)
G1795850 NA other upstream 1464345 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 1493336 28009421 ~ 28019116 (-)
G1796204 NA other upstream 1817905 28334224 ~ 28334621 (-)

Expression


Co-expression Network