LOC110501651 (LOC106582096)


Basic Information

Item Value
gene id LOC110501651
gene name LOC106582096
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26534234 ~ 26567495 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579356.2
TGTCATCAATGCTTACGTTGAAGACGCTTGAATTAATCCATGCAATGTTCTATACATTTGCATAAATGGACCTGAGATATCATATACCTATGTATATATTTGACGAGCTTGCCAAGAGTAAAAATGGCAACATATATTGTATATCAGTGGGTAGTACTGATTCATCTATCAACTTCCATGTAGCCACACTAGCCACCACAGAAGCAGTCACTTGAACAGAGTCACTTGAACATGGCGGAAGTTGGGCAGCTCGAATCAGAGCAGGACATTATTGAGAAGAAAATTGAGGAGACAAAACAGAAGTTCAAGAATGATTACGTCCAAGAATCGGACAAATATGACTCCAGAGATGTGGACAGGCTACAGAAGGATGACGCTCTGGTGGAGGCATACCTGACATGGCGACAATACTCTGTGGACGATGCCTTGAAAATGATTGACGATAGTTTCCTGTGGAGGAAAGAATTTGGTTTAAATGACCTCACTGAGAGCAGCATTCCAAAGTGGATGTTTGAGACGGGGGCTGTCTTCCTCCACGGCTACGACAAGGAAGGCAACAAGCTCTTCTGGTTCAAAGTCAAGCTACATACCAAGGATGCAAAGACCATCATGGACAAGAAGAAGTATGTTGCCTTCTGGCTGGAGCGCTATGCTAAGAGAGAGCCAGGGATGCCACTGACTGTTGTGTTCGACATGGCTGATTCAGGGATCAGCAATATCgACATGGATTTTGTGAAGTATATCATTAATTGCTTCAAAGTGTATTATCCAAAGTTTCTATCCAAAATGATCATTGTTGACATGCCATGGATCATGAATGctGCATGGAAGATTGTGAAGACATGGTTGGGTCCAGAAGCCATCAGCAAGCTCAAGTTTGCATCCAAAAACGAGATCCAGACGTTTATTGACCCTGAGTACCTCCCTCTTCACATGGGTGGAATGGACCCCTTCAAATACAGCTATCCTCCCCTTCCTGACGATGACTTCCAAACACCCACCTGTGAGAACGGACCAATCGTCAGCGAGGATGACAATGAGAGCAAGGAGGGCGAATCAGAGGGCAAGGAGTTGGAGTCAAGCTTCAGCTCTGAAGTCGCTGTCAAACCCAAAAAGGTGTATTTCTCTGAGGAGAGTCTGAGCAGTCTGAAGCTGGATGACAACGACAAAGGAGACTGTCGGACGAAGGGAGCTAGGAAGCCACTGACCACATTCAAGGGCCCTCTTCTAAACGTCAGTCCAGCAGAGGAGCTGAGTTTTGGCACCAAAGAGTCAGAGAGGAAGTGTCTTATCATCCTCGATAATGTGTCCAAGAATCAAGTGGccttcaagGTACGAACCACAGCACCTGAGAAGTACAGAGTGAAGCCCAGCAACAGCAGCTGTGAACCGGGCGCGTCTGTGGATATAGTGGTGTCTTTACATGGCGGCTACCAGGCGTCTCTGCAGGACCGCTTCTTGGTCATGGCTGCTGAAATGGAGCAGAACGCTGGTGCTGGATCACCAGAGCTCGCTCAGTTCTGGAAGGACGTGCCCAAAACCAAGATCATGGATCACAGATTACGATGTCACGTCCTGGAGAGCACTAAGCCCATTCTGAGCTATCCGAGTGGATGTGACAACCCTGTGGAAGGAGGAGCCAATGGCCACCCAGACCTGCACACAACGCTGATGCGTGTGATGGTGTGTAACGCCAGGCTGGAGCAGAAGCTGGACCAGTGTCTGTGGGTCCAGCAGGTCCTGATTGGTCTGGTGCTGGTTGTCATGATGTTCAGCTTCCTGACTCTCTACCACCTTTCTGGGGCTTCCTGACTTGACTCAACCTTGTCTACAGCAGCTTAAAGCTAAACCAACAGACAGGGCTGGTATTGGACttggtgataaaaaaaaaaacaaaggcaAACTCTCTTCTCTACAATGTCTGTCGTCATGAAATGGAGGAACGCTTTTTAATGTAGCAGTGAACTAGGGACATGTGGAGTTGTCAGTCAGTTGCCCAGAGAGATTCTTCATAGTCTCCTTGGCGTTGTGAGAGGTACCGTAGCTAAAGACTCGATACCGTGAAATGAAGTCAATAATGTATTTTTGTTACTAATCATGGAATTATAAATTAAGTATTTATTGCAATATGTAACATATTCATTATTTCAATATGTAATATGTAACATGATGAAGGAGATTTAGTTAATTTTTCTGATCCTAATGAACATTTCATTTGAAATATATAGTATAAAAATATCAGGTCAAGAATAAACGTGCACTTTTTCTTTAAACCAA

Function

NR:

description
motile sperm domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579356.2 True 2277 mRNA 0.45 15 26534234 26567495

Neighbor

gene id symbol gene type direction distance location
LOC110501648 LOC106582099 coding downstream 17915 26499603 ~ 26516319 (-)
LOC110501646 LOC106582100 coding downstream 87014 26388417 ~ 26447220 (-)
LOC110501645 LOC106582048 coding downstream 213149 26317235 ~ 26321085 (-)
LOC110502076 LOC106582039 coding downstream 234326 26294460 ~ 26299908 (-)
LOC110501642 LOC106582101 coding downstream 309437 26123770 ~ 26224797 (-)
glra2 glra2 coding upstream 19143 26586638 ~ 26597980 (-)
LOC110501655 LOC106582091 coding upstream 147202 26714697 ~ 26752657 (-)
LOC110502078 LOC106582090 coding upstream 237923 26805418 ~ 26913306 (-)
LOC110501658 cenpj coding upstream 355345 26922840 ~ 26933846 (-)
LOC118943583 cenpj coding upstream 366025 26933520 ~ 26944274 (-)
G1794527 LOC106582097 non-coding downstream 9307 26524070 ~ 26524927 (-)
G1794100 NA non-coding downstream 36224 26495978 ~ 26498010 (-)
G1794101 LOC106582098 non-coding downstream 42713 26483269 ~ 26491521 (-)
G1794009 NA non-coding downstream 131394 26398591 ~ 26402840 (-)
G1793945 NA non-coding downstream 152701 26381278 ~ 26381533 (-)
G1794633 NA non-coding upstream 143904 26711399 ~ 26712490 (-)
G1794663 NA non-coding upstream 193037 26760532 ~ 26760738 (-)
G1794685 NA non-coding upstream 228253 26795748 ~ 26796885 (-)
G1794736 NA non-coding upstream 291420 26858915 ~ 26859289 (-)
LOC110501627 LOC106582113 other downstream 822615 25709599 ~ 25744218 (-)
G1792433 NA other downstream 1547966 24985959 ~ 24986268 (-)
G1792345 NA other downstream 1676349 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 1684482 24848591 ~ 24849752 (-)
G1791405 NA other downstream 2207107 24326729 ~ 24327127 (-)
G1794978 NA other upstream 701167 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 1173877 27741372 ~ 27770708 (-)
G1795850 NA other upstream 1413169 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 1442160 28009421 ~ 28019116 (-)
G1796204 NA other upstream 1766729 28334224 ~ 28334621 (-)

Expression


Co-expression Network