glra2 (glra2)


Basic Information

Item Value
gene id glra2
gene name glra2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26586638 ~ 26597980 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579357.2
AATGGTGCGCTTGCGCGCAAAGGTAACGGGAGCTATCCAAGTGCTGAATCTGAAGAGGCGTCCACTTGTCTCCATTCCAGCAGTGGACAGTCTTCAACGCAAGGAAAGATTATGCTTCAACACTGCTATATGTTTTTGAGAACATACATCTGTTTTCAGTGAGTTTTTGAATGAAAGCGAGAACGCCTCATTGACGACTTGGCGATTTGTGTCACCTCACGACGTTTTTTTTTACAGGTTCTTTTTTGGCGGCAATGACTCAGAATTTATGATTCTGGGAACCAGTGTTTCATCAAACTAAACTATGATCCTACGAACTGGAATGCCACCTGCGTATTCTCTGTGTGCCACGAGAACACCCAACTGCGCTTTGGTCAGAAATAAAGCGACACTGCTGCTTGGATTGTGTGTTTGACCAGCATTCACATATGGAAGAAATAAAGAAGTGAAGAAATAAAAAATCAAGAGGAATGAATTGCCCCTTTATCAAAGTCTTGACTGCTTTATTTGCATGTTTAATGGAGACCAACAACAGCAGGGTGGTGGATGCCAAGGAGCATGAGTCCAGATCAGGATCTACTGCTAACTTGTCTCCCTCAGACTTTCTGGACTCATTGATGGGTAGAACATCGGGTTATGATGCACGAATAAGACCGAACTTCAAAGGTCCCCCAGTTAATGTTACCTGCAACATATTTATCAACAGCTTTGGTTCTATAGCAGAAACTACAATGGATTACAGAGTGAACATCTTCCTGCGACAGAAGTGGAGAGACCCTCGGCTGGCGTACAGCAAATACCCAGACTCCTCTCTGGACCTGGATCCATCCATGTTGGATTCTATCTGGAAACCTGACCTGTTCTTCGCCAATGAGAAAGGTGCCAACTTCCATGATGTCACCACAGACAACAAGCTCCTGAGGGTCTTCAAAGATGGTACCGTCCTGTACAGTATCAGGTTGACTCTCATTCTATCTTGTCCAATGGATCTGAAGAACTTTCCCATGGACATGCAGATCTGTACCATGCAACTGGAGAGCTTTGGCTACACCATGAATGACTTGATCTTTGAGTGGGAGAGCAAGGACAAAAATCCGGTGCAGGTGGCCGCAGGGCTGACCCTCCCCCAGTTTATCATGAGAGATGAGAAGGAGCTGGGATACTGTACCAAAAGCTACAACACCGGTAAATTTACCTGCATTGAGGTGAAGTTCCACTTGGAGAGACAGATGGGTTACTACCTGATCCAGATGTACATCCCCAGCCTCCTCATTGTCATCCTCTCCTGGGTCTCCTTCTGGATCAACATGGATGCCGCGCCCGCCAGGGTAGCGCTGGGCATCACCACCGTGCTCACCATGACAACCCAGAGCTCCGGCTCCAGAGCCTCCCTTCCTAAGGTGTCCTATGTGAAGGCCATTGATATCTGGATGGCCGTGTGTCTCCTGTTTGTATTCGCTGCCCTACTGGAATATGCTGGGGTTAACTTTGTTTCCAGGCAACAGAAGGACTTACTTCGCTTGAGGCGAAGACAGAGGCGGACTCACAAGGATGATGACATGAGGGATGGCCGCTTCAATTTCTCTGGTTACGGCATGACTCAGTGTCTGAAGGATGGGTCGGCTGTTAAAAACGCTGTCTCAAACCCCGGCCCAGCACCACCAACTCCTAAAGAGAAAGAGGTAATAAGAAAAAGGTTTGTGGACAGGGCCAAGAGGATTGACACTGTGTCCCGAGCAGCCTTCCCTATGgccttcctcctcttcaacaTCTTCTACTGGATAACATACAAGGTCATCAGGCATGAGGACATTGGCATGCAGTCAGGGTAGTCGCTCTGCCCGGCAGGTTTTACCTATGGAACCCTCATCTTTCTCTCACTCTAATTTTACTGAATGAGAAATGATTGGACAGCAGTGAGACTACTTTATGTTGTGGGACTGTACATGGAGGAGAGGCACAGTGAtgctgggggtggtggtggtgttcttTCAGGGATAATTGATAGGTGTTCAAGCAAAATCGAATAGACTAATGTTTTAGATGAACAAGTGGTGAGGCACAGATATATTCCTATGTGTTAATGCATCCTGGAGATTCTACTGGGTTTTTACTCAAGGCACAGAGCAATGATGTAAAAAGGTGGACCACATTTTATGAGACAATACTGCCTTTGCATTTGTGCAACCTTGCAATGGAGCAACATTCCATGCATTTGTATGTGCAGTAGTCTGGGCTTTAGGGTTAGACTTTTGTGTGGTTTTCATATGAAGGTTGATTTAGAGCAGTTTTATACAATTGTACTGCAGTTCCTCACTGTTTCTACAAGCAGCAGTTCTATACGAGCacaatgtatacacacacacacgttttactatccttgtggggaccaaacaattgattcccattcaaaatcctattttctctaacccctaaacctaaaccaaactctgaccttaaccttaaccccaagaCTAAGACTAAAAAAGTATTTTTCCTTGTTGGGACCggcaaaatgtccccacttgattgaattttccttgttttactgtccttgtgAGGAGTTCTGGTCCCCTCAAGtatagtaaaaccaaacacacatcTATAAGGCCTACATGTGTGAAGAGATTAAATCCAGATTGACAGTTAGAAACTGCATTTTTATAAGCTACCCAAAGCCTTAGATATCATGAATTTGGAGATAAATGGTAGGCTTCCCTATCTTTCACAAAGCAATGTCTCTTTTCGCTCAGCTGTCTGTCAGATATGAATGCACTTATTTATTTAAAACTCAGTAACATTTTGCCTAAAGGTGGTTTGTATTTTCCACTCCCCTtcaacgtacagttgaagtcagaagtttacatacacttaggttggagtcattaaaactcgtttttcaaccactccacaaattttttgttaacaaatgatagttttggcaagtcgg
>TU2053825
TGGACAGTCTTCAACGCAAGGAAAGATTATGCTTCAACACTGCTATATGTTTTTGAGAACATACATCTGTTTTCAGTGAGTTTTTGAATGAAAGCGAGAACGCCTCATTGACGACTTGGCGATTTGTGTCACCTCACGACGTTTTTTTTTACAGGTTCTTTTTTGGCGGCAATGACTCAGAATTTATGATTCTGGGAACCAGTGTTTCATCAAACTAAACTATGATCCTACGAACTGGAATGCCACCTGCGTATTCTCTGTGTGCCACGAGAACACCCAACTGCGCTTTGGTCAGAAATAAAGCGACACTGCTGCTTGGATTGTGTGTTTGACCAGCATTCACATATGGAAGAAATAAAGAAGTGAAGAAATAAAAAATCAAGAGGAATGAATTGCCCCTTTATCAAAGTCTTGACTGCTTTATTTGCATGTTTAATGGAGACCAACAACAGCAGGGTGGTGGATGCCAAGGAGCATGAGTCCAGATCAGGATCTACTGCTAACTTGTCTCCCTCAGACTTTCTGGACTCATTGATGGGTAGAACATCGGGTTATGATGCACGAATAAGACCGAACTTCAAAGGTTGGTTTTTATTTGGCTTTCCTATGACTTGTTTAGTGTGGATTACAAAACATTTGCATAAAATGCATCTGGAATTATCAGTGTTTCCACCTATATGGCTATATTTAACTTTCTAGTATTGACATCCCTTACATAAAATGATGTAGGTGTAAACATTCTCAAGCTGAACACACCCTCAACAGTCAATAGGACATATTTTGAACAATGTATACA

Function

symbol description
glra2 Enables extracellularly glycine-gated ion channel activity. Predicted to act upstream of or within chloride transport and ion transmembrane transport. Predicted to be located in cell projection and postsynaptic membrane. Predicted to be integral component of plasma membrane. Predicted to be part of chloride channel complex. Is expressed in dorsal telencephalon; hindbrain; spinal cord; and ventral telencephalon. Orthologous to human GLRA2 (glycine receptor alpha 2).

NR:

description
glycine receptor subunit alpha-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579357.2 False 2950 mRNA 0.45 9 26586638 26597980
TU2053825 True 796 lncRNA 0.39 2 26596462 26597897

Neighbor

gene id symbol gene type direction distance location
LOC110501651 LOC106582096 coding downstream 19143 26534234 ~ 26567495 (-)
LOC110501648 LOC106582099 coding downstream 70319 26499603 ~ 26516319 (-)
LOC110501646 LOC106582100 coding downstream 139418 26388417 ~ 26447220 (-)
LOC110501645 LOC106582048 coding downstream 265553 26317235 ~ 26321085 (-)
LOC110502076 LOC106582039 coding downstream 286730 26294460 ~ 26299908 (-)
LOC110501655 LOC106582091 coding upstream 116717 26714697 ~ 26752657 (-)
LOC110502078 LOC106582090 coding upstream 207438 26805418 ~ 26913306 (-)
LOC110501658 cenpj coding upstream 324860 26922840 ~ 26933846 (-)
LOC118943583 cenpj coding upstream 335540 26933520 ~ 26944274 (-)
LOC110501659 NA coding upstream 341780 26939760 ~ 26943228 (-)
G1794528 LOC106583515 non-coding downstream 5325 26519122 ~ 26581313 (-)
G1794527 LOC106582097 non-coding downstream 61711 26524070 ~ 26524927 (-)
G1794100 NA non-coding downstream 88628 26495978 ~ 26498010 (-)
G1794101 LOC106582098 non-coding downstream 95117 26483269 ~ 26491521 (-)
G1794009 NA non-coding downstream 183798 26398591 ~ 26402840 (-)
G1794633 NA non-coding upstream 113419 26711399 ~ 26712490 (-)
G1794663 NA non-coding upstream 162552 26760532 ~ 26760738 (-)
G1794685 NA non-coding upstream 197768 26795748 ~ 26796885 (-)
G1794736 NA non-coding upstream 260935 26858915 ~ 26859289 (-)
G1794762 NA non-coding upstream 292751 26890731 ~ 26890949 (-)
LOC110501627 LOC106582113 other downstream 875019 25709599 ~ 25744218 (-)
G1792433 NA other downstream 1600370 24985959 ~ 24986268 (-)
G1792345 NA other downstream 1728753 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 1736886 24848591 ~ 24849752 (-)
G1791405 NA other downstream 2259511 24326729 ~ 24327127 (-)
G1794978 NA other upstream 670682 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 1143392 27741372 ~ 27770708 (-)
G1795850 NA other upstream 1382684 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 1411675 28009421 ~ 28019116 (-)
G1796204 NA other upstream 1736244 28334224 ~ 28334621 (-)

Expression


Co-expression Network