LOC110501655 (LOC106582091)


Basic Information

Item Value
gene id LOC110501655
gene name LOC106582091
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26714697 ~ 26752657 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579361.2
ATGCAGAGCTGGAGTTTGCCATCCAGCCCAACACCACCGGCAAACAGCTCTTTGACCAGAGTGCTGGAGCAGCACAAGTTGACTAAGGAACAGTGGGAGGACAGAATACAGACCTGGCATGAGGAACACACAGGCATGCTCAGagagGACTCTGTGATGGAGTATCTGAAGATAGCCCAGGACCTGGAAATGTATGGAGTCAACTACTTTGAGATCAAGAACAAGAAGGGAACCGAGTTGTGGCTGGGTGTGGATGCACTGGGACTCAATATCTACGAACATGAGGACAAGTTGACACCAAAGATTGGCTTCCCCTGGAGTGAGATCAGAAACATCTCCTTCAACGACAAGAAGTTTGTCATCAAACCCATCGACAAGAAAGCCCCAGACTTTGTATTCTACGCACCACGGTTGCGGATTAACAAGCGTATCCTGGCGCTGTGCATGGGGAACCACGAGCTGTACATGAGGAGGAGGAAGCCTGATACCATCGAGGTGCAGCAGATGAAGGCCCAGGCCCGGGAGGAGAAACACCACAAACAGATGGAGAGAGCCCAGCTAGAAAACGAGAAGAAAAAACGAGCGCacgcagagaaagagagggagaagatggagaaagagaaggatgaGCTGATCGAGAGACTCAGACAGATTGAGGAACAGACGCTAAAGGCCCAGAaagAGCTGGAGGATCAGACACGCAGGGCCCTGGAGTTGGaccaggagaggaagagagcgaaggaagaggcagagaggttggagaaagagaaacaggcaGCAGAGGAGGCCAAAGCAGAGCTGGTTAAACAGGCTGCTGACCAGATGAAGAACCAGGAACAACTGGCCGCTGAGCTAGGAGAATTCACCGCCAAAATCGCTCTGCTTGAAGAGGCCAAAAGGAAAAAGGAAGAGGAAGCGACAGAATGGCAACACAAAGCCATCTCAGCCCAGGAGGACCTGGAGAAGACTAAAGAGGAGCTGAAgtctgtgatgtcatcacccCCGGCGCCAGAGCACGATGAGCAGGATGAGACGAATGCTGAGGGTAGCACCGAGCTGCACAGTGATGGGGTCACCAGCCACCACAGCGAGGAGGAACGTGTCACAGAGGCCCAGAAGAACGAACGCGTCAAGGAACAGCTGCAGgcTCTGAGTTCAGAGTTGGCCCAGGCGAGGGACGACACCAAGAAGACCCAGAATGACATGCTACATGCGGAGAACGTGAAGGCTGGGAGGGACAAGTACAAGACCCTGCGTCAGATCCGCCAGGGAAACACCAAGCAGCGCATCGACGAGTTTGAGTCCATGTGAGAGACCTCGCCCTCCCACCCTTGCATTGCCACGACAACGGCTCGTTTTTGTGTACAGCAAAACGTGCCCGTTCCCGTCCCATTCCCCCAAATCCCTACTTGCAAAAAGGCCAGAGGTGTGTGGATTCAATGTCCCGCCAACTATGCCTTGCCAAAGCTCTGCCCACTAGCGGATGGCCAATCAAACTGCTCCATGCTTAGAGCTCTGCCTAACCACATCTGGACTCGCCTAATCTGGAATGGCAAGCAACATACTGTCGAAGAGAATTTCTCCATGAACAAAGGATAATTTTAATGCTTGCATGTCTGATGTAAGAATGGATAGAGAAATTGGTTGATATCTTGCTTTCATTGAGAGGGAACAATTGCAGTTTAACTTTTGGATGTCGCTGGCCAGCTTGTATGTAAAAGCTTTAAATACCGTACCTTACGTTTATTTGTTTGCCATTAGATTAAGAATTTTAATAGTTTTCTTTTTTTAACGAAACAGCCTTATTTGTCTCATTTAATTTCGGCTTCATATTTAACTGTGGTGAGTTAGCTGTGCTCTAGTCAGTCATGGGTCAGCTGATGTTGAACCAGTGGTTTAATTCCTCCAGAATTTGACAACAGCGTTTATCTGTCCTCCCATTCTTCTACCTATACCTTTGTGTCGTTTATCGTCAATTGAAGCATttaccatttatttattttcgttCACAATAAAGATTccatgtatgtctcttatttccAGTCAGTCAAAGTGTTCATCCCCAGGTTGAACGAGGTAAAACCAAATTGGAGGGAGGCAGCAGTGCATTATTATATGGATAGAGTGATATGAGGAACTGTTAATTTTGAACATTCCAGATTCATCACCTTCCAGACATGTAAGAATGGGGAAAATAAAAGAAGCACAAAACCGCCCTAGCCACGTTGGTTTTCTAAATCAAGGTTATGTAAGGAATGATCAGGTCAGCCACCTCCTTGAATTTACAACTGGTGTTGTTCCtggtgaaagaaaaaaaaactgttattAAATTGTAAATATCAATTGTTTTATCCTTAATGTCAATCGATGTACAACAATGAACTTTACTAACCTTTATCATCTTCAGTTACAACTTTGAACCCATTAATCATtagttaaaaacatttaaaaaataaaaatgtaatgttgTAGTAACCTTTCCAGAGATATTACCTTTCATACAGTGTTGTAGAAAGATGAcgacacattataggctattcaTTCAACTTTAT
>XM_021579359.2
AATGAACCACGCCTCGCTCCGCACCGTAAAAGTCCGACGGCCATATTGACTGACTGCATCTCCTTCTCCGCGGTGAAACTGGCTCAGTCGCGTCATACATAGCGGGGTGTCTAACGGGAAACATCTCGGTCTATTTTGGTCGCGTGGGATTTAAAGTAGACTACCAGGTGGACAGTTAACCGTTTTCAGAACGCAGTTCATCAATTGTGGCGGTGGAGCCCAGGGCGAGGCAACAAGGAGGAGGACGTTTTGTTTGCATTTTCTCTGCGGAAGGGCAAGGccggagagaggagaaagatgcCCAAACCGatCAATGTGCGTGTCACCACCATGGATGCAGAGCTGGAGTTTGCCATCCAGCCCAACACCACCGGCAAACAGCTCTTTGACCAGGTGGTGAAGACAGTGGGCCTCCGGGAGGTGTGGTTCTTTGGCCTGCAGTACACAGACAGTAAAGGTTACAGCACGTGGCTCAAACTCAATAAGAAGGTGACACAGCAGGATGTGAAGAAGGAGAACCCTCTGCAGTTCAAGTTCAGAGCCAAGTTCTTCCCTGAGGACGTGTCTGAAGAACTCATCCAGGAGATCACGCAGAGACTCTTCTTCCTGCAGGTGAAGGAGGCCATCCTGAACGATGAGAACTACTGTCCTCCAGAGACAGCCGTGTTGCTGGCCTCCTACTCTGTCCAGGCCAAGTATGCAGACTACAGCAGAGACGTCCACAAGCCTGGTTACCTCACCTCCGACCGCCTGCTGCCACAGAGAGTGCTGGAGCAGCACAAGTTGACTAAGGAACAGTGGGAGGACAGAATACAGACCTGGCATGAGGAACACACAGGCATGCTCAGagagGACTCTGTGATGGAGTATCTGAAGATAGCCCAGGACCTGGAAATGTATGGAGTCAACTACTTTGAGATCAAGAACAAGAAGGGAACCGAGTTGTGGCTGGGTGTGGATGCACTGGGACTCAATATCTACGAACATGAGGACAAGTTGACACCAAAGATTGGCTTCCCCTGGAGTGAGATCAGAAACATCTCCTTCAACGACAAGAAGTTTGTCATCAAACCCATCGACAAGAAAGCCCCAGACTTTGTATTCTACGCACCACGGTTGCGGATTAACAAGCGTATCCTGGCGCTGTGCATGGGGAACCACGAGCTGTACATGAGGAGGAGGAAGCCTGATACCATCGAGGTGCAGCAGATGAAGGCCCAGGCCCGGGAGGAGAAACACCACAAACAGATGGAGAGAGCCCAGCTAGAAAACGAGAAGAAAAAACGAGCGCacgcagagaaagagagggagaagatggagaaagagaaggatgaGCTGATCGAGAGACTCAGACAGATTGAGGAACAGACGCTAAAGGCCCAGAaagAGCTGGAGGATCAGACACGCAGGGCCCTGGAGTTGGaccaggagaggaagagagcgaaggaagaggcagagaggttggagaaagagaaacaggcaGCAGAGGAGGCCAAAGCAGAGCTGGTTAAACAGGCTGCTGACCAGATGAAGAACCAGGAACAACTGGCCGCTGAGCTAGGAGAATTCACCGCCAAAATCGCTCTGCTTGAAGAGGCCAAAAGGAAAAAGGAAGAGGAAGCGACAGAATGGCAACACAAAGCCATCTCAGCCCAGGAGGACCTGGAGAAGACTAAAGAGGAGCTGAAgtctgtgatgtcatcacccCCGGCGCCAGAGCACGATGAGCAGGATGAGACGAATGCTGAGGGTAGCACCGAGCTGCACAGTGATGGGGTCACCAGCCACCACAGCGAGGAGGAACGTGTCACAGAGGCCCAGAAGAACGAACGCGTCAAGGAACAGCTGCAGgcTCTGAGTTCAGAGTTGGCCCAGGCGAGGGACGACACCAAGAAGACCCAGAATGACATGCTACATGCGGAGAACGTGAAGGCTGGGAGGGACAAGTACAAGACCCTGCGTCAGATCCGCCAGGGAAACACCAAGCAGCGCATCGACGAGTTTGAGTCCATGTGAGAGACCTCGCCCTCCCACCCTTGCATTGCCACGACAACGGCTCGTTTTTGTGTACAGCAAAACGTGCCCGTTCCCGTCCCATTCCCCCAAATCCCTACTTGCAAAAAGGCCAGAGGTGTGTGGATTCAATGTCCCGCCAACTATGCCTTGCCAAAGCTCTGCCCACTAGCGGATGGCCAATCAAACTGCTCCATGCTTAGAGCTCTGCCTAACCACATCTGGACTCGCCTAATCTGGAATGGCAAGCAACATACTGTCGAAGAGAATTTCTCCATGAACAAAGGATAATTTTAATGCTTGCATGTCTGATGTAAGAATGGATAGAGAAATTGGTTGATATCTTGCTTTCATTGAGAGGGAACAATTGCAGTTTAACTTTTGGATGTCGCTGGCCAGCTTGTATGTAAAAGCTTTAAATACCGTACCTTACGTTTATTTGTTTGCCATTAGATTAAGAATTTTAATAGTTTTCTTTTTTTAACGAAACAGCCTTATTTGTCTCATTTAATTTCGGCTTCATATTTAACTGTGGTGAGTTAGCTGTGCTCTAGTCAGTCATGGGTCAGCTGATGTTGAACCAGTGGTTTAATTCCTCCAGAATTTGACAACAGCGTTTATCTGTCCTCCCATTCTTCTACCTATACCTTTGTGTCGTTTATCGTCAATTGAAGCATttaccatttatttattttcgttCACAATAAAGATTccatgtatgtctcttatttccAGTCAGTCAAAGTGTTCATCCCCAGGTTGAACGAGGTAAAACCAAATTGGAGGGAGGCAGCAGTGCATTATTATATGGATAGAGTGATATGAGGAACTGTTAATTTTGAACATTCCAGATTCATCACCTTCCAGACATGTAAGAATGGGGAAAATAAAAGAAGCACAAAACCGCCCTAGCCACGTTGGTTTTCTAAATCAAGGTTATGTAAGGAATGATCAGGTCAGCCACCTCCTTGAATTTACAACTGGTGTTGTTCCtggtgaaagaaaaaaaaactgttattAAATTGTAAATATCAATTGTTTTATCCTTAATGTCAATCGATGTACAACAATGAACTTTACTAACCTTTATCATCTTCAGTTACAACTTTGAACCCATTAATCATtagttaaaaacatttaaaaaataaaaatgtaatgttgTAGTAACCTTTCCAGAGATATTACCTTTCATACAGTGTTGTAGAAAGATGAcgacacattataggctattcaTTCAACTTTAT
>XM_021579360.2
CAATGAACCACGCCTCGCTCCGCACCGTAAAAGTCCGACGGCCATATTGACTGACTGCATCTCCTTCTCCGCGGTGAAACTGGCTCAGTCGCGTCATACATAGCGGGGTGTCTAACGGGAAACATCTCGGTCTATTTTGGTCGCGTGGGATTTAAAGTAGACTACCAGGTGGACAGTTAACCGTTTTCAGAACGCAGTTCATCAATTGTGGCGGTGGAGCCCAGGGCGAGGCAACAAGGAGGAGGACGTTTTGTTTGCATTTTCTCTGCGGAAGGGCAAGGccggagagaggagaaagatgcCCAAACCGatCAATGTGCGTGTCACCACCATGGATGCAGAGCTGGAGTTTGCCATCCAGCCCAACACCACCGGCAAACAGCTCTTTGACCAGGTGGTGAAGACAGTGGGCCTCCGGGAGGTGTGGTTCTTTGGCCTGCAGTACACAGACAGTAAAGGTTACAGCACGTGGCTCAAACTCAATAAGAAGGTGACACAGCAGGATGTGAAGAAGGAGAACCCTCTGCAGTTCAAGTTCAGAGCCAAGTTCTTCCCTGAGGACGTGTCTGAAGAACTCATCCAGGAGATCACGCAGAGACTCTTCTTCCTGCAGGTGAAGGAGGCCATCCTGAACGATGAGAACTACTGTCCTCCAGAGACAGCCGTGTTGCTGGCCTCCTACTCTGTCCAGGCCAAGTATGCAGACTACAGCAGAGACGTCCACAAGCCTGGTTACCTCACCTCCGACCGCCTGCTGCCACAGAGAGTGCTGGAGCAGCACAAGTTGACTAAGGAACAGTGGGAGGACAGAATACAGACCTGGCATGAGGAACACACAGGCATGCTCAGagagGACTCTGTGATGGAGTATCTGAAGATAGCCCAGGACCTGGAAATGTATGGAGTCAACTACTTTGAGATCAAGAACAAGAAGGGAACCGAGTTGTGGCTGGGTGTGGATGCACTGGGACTCAATATCTACGAACATGAGGACAAGTTGACACCAAAGATTGGCTTCCCCTGGAGTGAGATCAGAAACATCTCCTTCAACGACAAGAAGTTTGTCATCAAACCCATCGACAAGAAAGCCCCAGACTTTGTATTCTACGCACCACGGTTGCGGATTAACAAGCGTATCCTGGCGCTGTGCATGGGGAACCACGAGCTGTACATGAGGAGGAGGAAGCCTGATACCATCGAGGTGCAGCAGATGAAGGCCCAGGCCCGGGAGGAGAAACACCACAAACAGATGGAGAGAGCCCAGCTAGAAAACGAGAAGAAAAAACGAGCGCacgcagagaaagagagggagaagatggagaaagagaaggatgaGCTGATCGAGAGACTCAGACAGATTGAGGAACAGACGCTAAAGGCCCAGAaagAGCTGGAGGATCAGACACGCAGGGCCCTGGAGTTGGaccaggagaggaagagagcgaaggaagaggcagagaggttggagaaagagaaacaggcaGCAGAGGAGGCCAAAGCAGAGCTGGTTAAACAGGCTGCTGACCAGATGAAGAACCAGGAACAACTGGCCGCTGAGCTAGGAGAATTCACCGCCAAAATCGCTCTGCTTGAAGAGGCCAAAAGGAAAAAGGAAGAGGAAGCGACAGAATGGCAACACAAAGCCATCTCAGCCCAGGAGGACCTGGAGAAGACTAAAGAGGAGCTGAAgtctgtgatgtcatcacccCCGGCGCCAGAGCACGATGAGCAGGATGAGACGAATGCTGAGGGTAGCACCGAGCTGCACAGTGATGGGGTCACCAGCCACCACAGCGAGGAGGAACGTGTCACAGAGGCCCAGAAGAACGAACGCGTCAAGGAACAGCTGCAGgcTCTGAGTTCAGAGTTGGCCCAGGCGAGGGACGACACCAAGAAGACCCAGAATGACATGCTACATGCGGAGAACGTGAAGGCTGGGAGGGACAAGTACAAGACGCATCGACGAGTTTGAGTCCATGTGAGAGACCTCGCCCTCCCACCCTTGCATTGCCACGACAACGGCTCGTTTTTGTGTACAGCAAAACGTGCCCGTTCCCGTCCCATTCCCCCAAATCCCTACTTGCAAAAAGGCCAGAGGTGTGTGGATTCAATGTCCCGCCAACTATGCCTTGCCAAAGCTCTGCCCACTAGCGGATGGCCAATCAAACTGCTCCATGCTTAGAGCTCTGCCTAACCACATCTGGACTCGCCTAATCTGGAATGGCAAGCAACATACTGTCGAAGAGAATTTCTCCATGAACAAAGGATAATTTTAATGCTTGCATGTCTGATGTAAGAATGGATAGAGAAATTGGTTGATATCTTGCTTTCATTGAGAGGGAACAATTGCAGTTTAACTTTTGGATGTCGCTGGCCAGCTTGTATGTAAAAGCTTTAAATACCGTACCTTACGTTTATTTGTTTGCCATTAGATTAAGAATTTTAATAGTTTTCTTTTTTTAACGAAACAGCCTTATTTGTCTCATTTAATTTCGGCTTCATATTTAACTGTGGTGAGTTAGCTGTGCTCTAGTCAGTCATGGGTCAGCTGATGTTGAACCAGTGGTTTAATTCCTCCAGAATTTGACAACAGCGTTTATCTGTCCTCCCATTCTTCTACCTATACCTTTGTGTCGTTTATCGTCAATTGAAGCATttaccatttatttattttcgttCACAATAAAGATTccatgtatgtctcttatttccAGTCAGTCAAAGTGTTCATCCCCAGGTTGAACGAGGTAAAACCAAATTGGAGGGAGGCAGCAGTGCATTATTATATGGATAGAGTGATATGAGGAACTGTTAATTTTGAACATTCCAGATTCATCACCTTCCAGACATGTAAGAATGGGGAAAATAAAAGAAGCACAAAACCGCCCTAGCCACGTTGGTTTTCTAAATCAAGGTTATGTAAGGAATGATCAGGTCAGCCACCTCCTTGAATTTACAACTGGTGTTGTTCCtggtgaaagaaaaaaaaactgttattAAATTGTAAATATCAATTGTTTTATCCTTAATGTCAATCGATGTACAACAATGAACTTTACTAACCTTTATCATCTTCAGTTACAACTTTGAACCCATTAATCATtagttaaaaacatttaaaaaataaaaatgtaatgttgTAGTAACCTTTCCAGAGATATTACCTTTCATACAGTGTTGTAGAAAGATGAcgacacattataggctattcaTTCAACTTTAT

Function

NR:

description
radixin-like isoform X2

GO: NA

KEGG:

id description
K05762 RDX; radixin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579361.2 False 2552 mRNA 0.46 10 26714697 26729795
XM_021579359.2 False 3257 mRNA 0.48 14 26714697 26752656
XM_021579360.2 True 3223 mRNA 0.48 15 26714697 26752657

Neighbor

gene id symbol gene type direction distance location
glra2 glra2 coding downstream 116717 26586638 ~ 26597980 (-)
LOC110501651 LOC106582096 coding downstream 147202 26534234 ~ 26567495 (-)
LOC110501648 LOC106582099 coding downstream 198378 26499603 ~ 26516319 (-)
LOC110501646 LOC106582100 coding downstream 267477 26388417 ~ 26447220 (-)
LOC110501645 LOC106582048 coding downstream 393612 26317235 ~ 26321085 (-)
LOC110502078 LOC106582090 coding upstream 52761 26805418 ~ 26913306 (-)
LOC110501658 cenpj coding upstream 170183 26922840 ~ 26933846 (-)
LOC118943583 cenpj coding upstream 180863 26933520 ~ 26944274 (-)
LOC110501659 NA coding upstream 187103 26939760 ~ 26943228 (-)
LOC110501663 LOC106582084 coding upstream 396672 27149329 ~ 27186838 (-)
G1794633 NA non-coding downstream 2207 26711399 ~ 26712490 (-)
G1794528 LOC106583515 non-coding downstream 133384 26519122 ~ 26581313 (-)
G1794527 LOC106582097 non-coding downstream 189770 26524070 ~ 26524927 (-)
G1794100 NA non-coding downstream 216687 26495978 ~ 26498010 (-)
G1794663 NA non-coding upstream 7875 26760532 ~ 26760738 (-)
G1794685 NA non-coding upstream 43091 26795748 ~ 26796885 (-)
G1794736 NA non-coding upstream 106258 26858915 ~ 26859289 (-)
G1794762 NA non-coding upstream 138074 26890731 ~ 26890949 (-)
G1794748 LOC107572531 non-coding upstream 143751 26896408 ~ 26964871 (-)
LOC110501627 LOC106582113 other downstream 1003078 25709599 ~ 25744218 (-)
G1792433 NA other downstream 1728429 24985959 ~ 24986268 (-)
G1792345 NA other downstream 1856812 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 1864945 24848591 ~ 24849752 (-)
G1791405 NA other downstream 2387570 24326729 ~ 24327127 (-)
G1794978 NA other upstream 516005 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 988715 27741372 ~ 27770708 (-)
G1795850 NA other upstream 1228007 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 1256998 28009421 ~ 28019116 (-)
G1796204 NA other upstream 1581567 28334224 ~ 28334621 (-)

Expression


Co-expression Network