LOC110501658 (cenpj)


Basic Information

Item Value
gene id LOC110501658
gene name cenpj
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26922840 ~ 26933846 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579369.2
AGGGGAGGGCCTCTCCAGATTCACCAACCGAAGCAAAGCCCCTATGCCAAACAGAGGGGGACCCCAAAAAGATCCCCAGGCCAAGGTCAGCACCCGTTGGACCTCAGAGCCCACCCAGAAGGTCAGTCAGCGCCCCCCCCGTACAGCGCAAGACTGCTGTGCTCAACAAGGAGAACAGACCAAGAGACCCGTACTCACCTCTTCTGGACAGTGTCAGACCAGAAGGCAAGACAGACAAGCTGGCCGCAGTGAGGCCCAGAGTCCTGGGCAGTCATCAGAGACAGAACATTGAGATGACTAACTGTCTAAGGCCAATGGAGGTGATTAGTAACAAGGTGGGCGGGACTTCTCAACCTGTGAGTAGAACTCCTGCAGCTGTAACTAAACAGTTTGGGcttgaggagaggactggagcaCTGCAAAGGAATGGAAGTGGTCCATCGAGACCGGATGGAGCAGCAGAGGGAAAATCAGGTGTTCCGGAGTATTCCTTTGAGCTGTCATTCCAGGAGAAGCTGCAGCACTGGGACTGTGACCGTCAGAAGGAGAGTGTGGAGCTGGGGGAGTTTGAGCTGCTGGAGCAGGCAGCCGAGgaactctccttctcctccaactCATCCTTTGTCATGAAGGTGCTGCAGCTGGACCAGCAACATCCCCTTCAGGGCAGCAGGGGGAGCCGTCCGCGACGCCTCTCCTCCACGCCCATCAAATCCCCCTCGCTGCCTAAAGGGGTTCACAGCTGGGGCACCAGTAGAAGTGGCCAAGGTACAGGGACCAGCTCATCTGAATCACCAGGAGTATCTGCTGTGAGGGTAATGAGGGAAAACAGCAAAGCCACTGATGAGGAGGAAGAAGATGAAGTGAGCGACGGCAAACATGAGGAAATCTCTGACATCTTGTTCCGCAGCAGCTCTGAATTCGGGGATCGGGAGGAAGTAGCTCAACCGTCATACCAGACTACAGTTTCCAGCAACCTCTGGGAAAACCCGCTCCCCGCATCCAACCCTCCATACGACAAGAGGTCatatcaggacagagagggaggctcAAGCCAGGCAGAGGAGGGCGGGCAGAGTGACCTTGACGACTCCACCCTTTTGGAGGACAGAGAAAATGGGGACCACGAGGGTCTGTTGGTGTTTGATGATGATGACACCTGGAACGACCTGGAGGAGGCTGGCAGCATCGTTGAGGACGACAGCAGAACAAGAGGCGCTGCAACAGGAAACCGACACACTTCCACAGCAACAGTGAATGACATTTCACCCTCAGAGAGGACACTGAAGAGAAAGGTGGCTGTGGCCAAAGGGACGGAGCTGGAGAGGATGTCTGTTATCACAGCAGCCAACCAGGAGCCAGATCCTCCTCCCGCTTCCCAGCTCATGGCCAGGCTGTTCCCCTCGCTAAAGCCCAAAACCCAGGCCCCTTCTCCACCAGAACCTAGAAAGACTGAGGACGGATCAGgCCAGCAGCAGTCCAGGCAGCTGAGGGAGAGGCTGGTGGAGCTGGAGCTGGAGATTGAACGTTTCAGGACAGAGAATGCTGCCTTGGCCAGACTCAGACAGGAGAACGAAAAGAACCAGGAGAAACTCCGGAAGGAGTGTGCTGATTTTGAGCAGCGCAAGGCTGAGGAGCTGGCCAAGTTTGAGGAGTTCAAGAGGGAGGAGACCAAGAAGCTGCAGAAGGAACGCAAGGTGTTTGAGAGGCATGCCTCTGCCGCCAGAGCCATACCAGACAAGAGGGAGCGTGACGAGATCCAGGCCATGAAGAAGCAGCTGAGTTTCCTGCAGGAGGAGTTGAAGCGGAGAGAGAGCCGCTGGTCCACCACACATAATCGTCTCCGGCAGCAGATAGACTCCCTGAGCTCAGACAACAGCAACCTGAAAGACGAGGTCCGCACCATGGAGAAACTACGCCTCAGCACCTGGAGGAAGATTGGGACAGACAGCGAAAGAGAGAAcgacaggagggagaaggagagggggagggagggatccaGGCCGTTGGACAGTTACATTGCTCTTGAAGCCAGGTGCCTCAAATTGGCAAGTCCTCCTGACACGGTGAGGAGCAGCCAACCACAGAGCAGCATCTCCTCTAAAGGCAGCCCATCAGGACACAGCCCCACCACTCAAGGAGGTATCAGGGGCATCCTGAAGAGGTCAGGCCCTACACCAGCACCCAGCCCCGCACACAGTTACAGCTCAGAGGATAGACCAGAATCTTTGACCAGGAGCCATCACCCAGCACAGAGCCACGACCACTCAAACAACCTGTCCCCTAGAGCTCGAGGTCTGCAGACTGAGACAGAGGTCAAAGAGCAACAAGAGCCAGGTCAAGATGTCCTCACCCACTCTGATGGAAAGATGGAGAGGGTTCTGCCCTGTGGAGGGAGACTCATCATCTTTCCCAATGGGACCAGGAAGGAGGTGTCAGCGGACGGACTGACAGTCAAAGTCACCTTCTTCAACGGGGACATCAAGCAGGTCATGGCTGACCAGAGAGTGATCTACTACTATGCGGATGCCCAGACCACTCACACCACCTATCCTGATGGCATCGAGGTTCTGCAGTTCCCCAACAACCAGACTGAGAAGCATTTCCCTGATGGCCGGAAGGAGATCACATTCCCTGACCAGACAGTCAAGAACCTCTATCcagatgggagggaggagagtgtcCTCACTGACGGGACCATCATACAAGTTAACTTGGATGGCAGTAAGGAGATCCAGTTCAACACAGGCCAGAAGGAGATCCACACAGCAGACTATAAGAGGAGGGAGTACCCAGATGGCACGTTGAAGACAGTCTATACCGATGGCAGACAGGAGACCCGCTACCCCACCGGACGCCTCAGAGTTAAAGACAAGGATGGTAACATTGTCATGGACAACAGGCCCTAGGATTGTTTATGCAATATGAGGTATCGTCATCGGAACTAAAGCTGAAGCACAGTTGAACATTTATGTTGGTGTGAGTTGTTTGACATAGGTTTTTAGTATGTTTGAGTTGAATGTAGTGATGAGTGACTTGTAAAAAATGTCTAATccatatttattttcttagttgattgtatttttttggtaaaataaatgtttaatcaAATCA

Function

symbol description
cenpj Enables protein domain specific binding activity. Predicted to be involved in centriole elongation and cilium assembly. Predicted to act upstream of or within cell division and regulation of centriole replication. Predicted to be active in centriole; centrosome; and nucleus. Human ortholog(s) of this gene implicated in Seckel syndrome 4; primary autosomal recessive microcephaly; and primary autosomal recessive microcephaly 6. Orthologous to human CENPJ (centromere protein J).

NR:

description
centromere protein J

GO: NA

KEGG:

id description
K11502 CENPJ; centromere protein J

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579369.2 True 3114 mRNA 0.54 12 26922840 26933846

Neighbor

gene id symbol gene type direction distance location
LOC110502078 LOC106582090 coding downstream 9534 26805418 ~ 26913306 (-)
LOC110501655 LOC106582091 coding downstream 170183 26714697 ~ 26752657 (-)
glra2 glra2 coding downstream 324860 26586638 ~ 26597980 (-)
LOC110501651 LOC106582096 coding downstream 355345 26534234 ~ 26567495 (-)
LOC110501648 LOC106582099 coding downstream 406521 26499603 ~ 26516319 (-)
LOC110501659 NA coding upstream 5914 26939760 ~ 26943228 (-)
LOC110501663 LOC106582084 coding upstream 215483 27149329 ~ 27186838 (-)
LOC110501665 NA coding upstream 406987 27340833 ~ 27364593 (-)
LOC110502080 wars2 coding upstream 437221 27371067 ~ 27437479 (-)
LOC110501670 LOC106582076 coding upstream 558628 27492474 ~ 27498625 (-)
G1794762 NA non-coding downstream 31891 26890731 ~ 26890949 (-)
G1794736 NA non-coding downstream 63551 26858915 ~ 26859289 (-)
G1794685 NA non-coding downstream 125955 26795748 ~ 26796885 (-)
G1794663 NA non-coding downstream 162102 26760532 ~ 26760738 (-)
G1794633 NA non-coding downstream 210350 26711399 ~ 26712490 (-)
LOC118943583 cenpj non-coding upstream 2741 26933520 ~ 26944274 (-)
G1794904 NA non-coding upstream 178015 27111861 ~ 27114211 (-)
G1794884 NA non-coding upstream 211942 27145788 ~ 27146680 (-)
G1794885 NA non-coding upstream 213864 27147710 ~ 27148363 (-)
LOC110501627 LOC106582113 other downstream 1211221 25709599 ~ 25744218 (-)
G1792433 NA other downstream 1936572 24985959 ~ 24986268 (-)
G1792345 NA other downstream 2064955 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 2073088 24848591 ~ 24849752 (-)
G1791405 NA other downstream 2595713 24326729 ~ 24327127 (-)
G1794978 NA other upstream 334816 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 807526 27741372 ~ 27770708 (-)
G1795850 NA other upstream 1046818 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 1075809 28009421 ~ 28019116 (-)
G1796204 NA other upstream 1400378 28334224 ~ 28334621 (-)

Expression


Co-expression Network