LOC110501659


Basic Information

Item Value
gene id LOC110501659
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26939760 ~ 26943228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470233.2
TTCGTCACTCGTTCATTGTTTTCAGCCACTGGTAGCTTGTAGATGCATTATATgctctacagtcaattatgattgcatgtctacttatagtaactatataattattaatatacgcctactgtatgatagctagaaAATGAATTAGCTAACGTTAtcctgcctagctggaacttctgaaggaAAATTtgttatttctacaatttccaaaagctaaccaaagAAAAACATAATTACTTTTATGAGACCTGGTTATGCCGTCATGTGCATTAGAAGCACAATTTCTAACCtgtttacttacacttgtatgttgacgtCCATATTGACGTTGAGGTTTTACGTTTCGGTggacttttcttagcggatgtacaatgAACGCGAATTAAATTATGGGGGGGTTTCAGGCCCGAAGTGAACATATTTGTACACTTCCCTTGTTTGGACCGACGTCCAAGATGGTGACGGGGATTCCCCTaagggcataaggcgaggGTGCAGAATGCCGTGTATGGAGGATTGACTGGGGTGTACAGATGAGCAATGCCAGTGGAATTTGGGGACACAGTGGAATTTAGCTCAAAAGGTTGAGCGAGATCTTTTGAGTTCTCTGACAGCACCCCAGCCGCTTCTCCATCTCTACCTAAAACCCCTGCGTACCACTCCCACAACGTACTTAAGAAGAGTTTGGAAGGGGCCAATGTTCCACTTGGAGCCTTCTgcacaagtgcatcaaagctaaACCAAACAGTCATCATGTTCCAACAGCAGCCACACAGTAAACACGGCATCAACACAGTGTCAGAAATGCTTGTAATTTTATGACTTTTATGTTAAGCTAGAGGAGTGTAAATGTGCCAGCTTGGATGAGGTTACTAAAGCACAGAGTGCCTCCTATGCATGGTATGACACACTTACATTTCAGATCACTGCAAGCTCAGTAAAGAATGTTCCTGTGCGCACCTCAACAAATCCTGACCACTTTGTGCAGGAGCATCTCTTCCCCAGGTTCCATGGAAACTCAGAAACCACATATGGCAAGAAAAACGAGCAGGTGGCCTACACATGGATGGAGAGCTGTGGGTTTAGTTTGGAGAGTAGAGGCACAGTAGTGTGTCAAGGAGCCATGTCTTTCTGCAAGCCCACAGATGGAGTGTTAAACTCTCAAGAACTTCTAGAAATTAAAATGTCCTGTTCTGAGTGAAGTGTGAGTCTCTGGCAAACTCCTCGACGTGAAGCTGGTGGATGGAGTTCCTCAGCTACAACATAATGGAGCCTGTGGGTACTACGTGCAGGAGCAATTGGGCATGTTCTGCACAGGACTGGAGATATGCAAACTGTTGTCTGGGCTCTGTCCGAGCTGGTTGTTATTGATGTGCCTATTGATGTGAAGTTCTGTGCTGATGTTATCCCTAAACTGAAGGCATTCTATTTCCTACATATGCTGCCAAGGGTAGTATATGAGTTCCAGTTAGGCAGACTGTGTGCTCAAAATATGTTAATCTATGTGGTATCTAGGCTAATACTTTGTTTTGAAATAGTTCTTATATTTTGTGCCTTGTAAAGATCTCTGTTAGCTCTACCTTATTATCTAAGCATAACTCTTGATGTTTTTTGTTGTCTTGCACAGTTCTCTTCATATGCACATTTACCTGATTTATATTTGCATAATTCTTCTTGGTGTTTTTTACGTCTTGCCTTGTACAGCTCTCTTCATACATGTGTATCTAATGCCTAAGGATTACTCCTTATGATTTATGAATATTTTAATTGTACCTTGTATAGCTCTTTATTTTCATTTGGCACTTCATTAACTTATCTAAGCATACCATAACGCATCTTGCACTTGAGAAATGATGGCATTAATAAAAACATGaaattccacttt
>TU2054013
TAGCTTGTAGATGCATTATATgctctacagtcaattatgattgcatgtctacttatagtaactatataattattaatatacgcctactgtatgatagctagaaAATGAATTAGCTAACGTTAtcctgcctagctggaacttctgaaggaAAATTtgttatttctacaatttccaaaagctaaccaaagAAAAACATAATTACTTTTATGAGACCTGGTTATGCCGTCATGTGCATTAGAAGCACAATTTCTAACCtgtttacttacacttgtatgttgacgtCCATATTGACGTTGAGGTTTTACGTTTCGGTggacttttcttagcggatgtacaatgAACGCGAATTAAATTATGGGGGGGTTTCAGGCCCGAAGTGAACATATTTGTACACTTCCCTTGTTTGGACCGACGTCCAAGATGGTGACGGGGATTCCCCTaagggcataaggcgaggGTGCAGAATGCCGTGTATGGAGGATTGACTGGGGTGTACAGATGAGCAATGCCAGTGGAATTTGGGGACACAGTGGAATTTAGCTCAAAAGGTTGAGCGAGATCTTTTGAGTTCTCTGACAGCACCCCAGCCGCTTCTCCATCTCTACCTAAAACCCCTGCGTACCACTCCCACAACGTACTTAAGAAGAGTTTGGAAGGGGCCAATGTTCCACTTGGAGCCTTCTgcacaagtgcatcaaagctaaACCAAACAGTCATCATGTTCCAACAGCAGCCACACAGTAAACACGGCATCAACACAGTGTCAGAAATGCTTGTAATTTTATGACTTTTATGTTAAGCTAGAGGAGTGTAAATGTGCCAGCTTGGATGAGGTTACTAAAGCACAGAGTGCCTCCTATGCATGGTATGACACACTTACATTTCAGATCACTGCAAGCTCAGTAAAGAATGTTCCTGTGCGCACCTCAACAAATCCTGACCACTTTGTGCAGGAGCATCTCTTCCCCAGGTTCCATGGAAACTCAGAAACCACATATGGCAAGAAAAACGAGCAGGTGGCCTACACATGGATGGAGAGCTGTGGGTTTAGTTTGGAGAGTAGAGGCACAGTAGTGTGTCAAGGAGCCATGTCTTTCTGCAAGCCCACAGATGGAGTGTTAAACTCTCAAGAACTTCTAGAAATTAAAATGTCCTGTTCTGAGTGAAGTGTGAGTCTCTGGCAAACTCCTCGACGTGAAGCTGGTGGATGGAGTTCCTCAGCTACAACATAATGGAGCCTGTGGGTACTACGTGCAGGAGCAATTGGGCATGTTCTGCACAGGACTGGAGATATGCAAACTGTTGTCTGGGCTCTGTCCGAGCTGGTTGTTATTGATGTGCCTATTGATGTGAAGTTCTGTGCTGATGTTATCCCTAAACTGAAGGCATTCTATTTCCTACATATGCTGCCAAGGGTAGTATATGAGTTCCAGTTAGGCAGACTGTGTGCTCAAAATATGTTAATCTATGTGGTATCTAGGCTAATACTTTGTTTTGAAATAGTTCTTATATTTTGTGCCTTGTAAAGATCTCTGTTAGCTCTACCTTATTATCTAAGCATAACTCTTGATGTTTTTTGTTGTCTTGCACAGTTCTCTTCATATGCACATTTACCTGATTTATATTTGCATAATTCTTCTTGGTGTTTTTTACGTCTTGCCTTGTACAGCTCTCTTCATACATGTGTATCTAATGCCTAAGGATTACTCCTTATGATTTATGAATATTTTAATTGTACCTTGTATAGCTCTTTATTTTCATTTGGCACTTCATTAACTTATCTAAGCATACCATAACGCATCTTGCACTTGAGAAATGATGGCATTAATAAAAACATGaaattcca
>TU2054014
TAGCTTGTAGATGCATTATATgctctacagtcaattatgattgcatgtctacttatagtaactatataattattaatatacgcctactgtatgatagctagaaAATGAATTAGCTAACGTTAtcctgcctagctggaacttctgaaggaAAATTtgttatttctacaatttccaaaagctaaccaaagAAAAACATAATTACTTTTATGAGACCTGGTTATGCCGTCATGTGCATTAGAAGCACAATTTCTAACCtgtttacttacacttgtatgttgacgtCCATATTGACGTTGAGGTTTTACGTTTCGGTggacttttcttagcggatgtacaatgAACGCGAATTAAATTATGGGGGGGTTTCAGGCCCGAAGTGAACATATTTGTACACTTCCCTTGTTTGGACCGACGTCCAAGATGGTGACGGGGATTCCCCTaagggcataaggcgaggAATGCCGTGTATGGAGGATTGACTGGGGTGTACAGATGAGCAATGCCAGTGGAATTTGGGGACACAGTGGAATTTAGCTCAAAAGGTTGAGCGAGATCTTTTGAGTTCTCTGACAGCACCCCAGCCGCTTCTCCATCTCTACCTAAAACCCCTGCGTACCACTCCCACAACGTACTTAAGAAGAGTTTGGAAGGGGCCAATGTTCCACTTGGAGCCTTCTgcacaagtgcatcaaagctaaACCAAACAGTCATCATGTTCCAACAGCAGCCACACAGTAAACACGGCATCAACACAGTGTCAGAAATGCTTGTAATTTTATGACTTTTATGTTAAGCTAGAGGAGTGTAAATGTGCCAGCTTGGATGAGGTTACTAAAGCACAGAGTGCCTCCTATGCATGGTATGACACACTTACATTTCAGATCACTGCAAGCTCAGTAAAGAATGTTCCTGTGCGCACCTCAACAAATCCTGACCACTTTGTGCAGGAGCATCTCTTCCCCAGGTTCCATGGAAACTCAGAAACCACATATGGCAAGAAAAACGAGCAGGTGGCCTACACATGGATGGAGAGCTGTGGGTTTAGTTTGGAGAGTAGAGGCACAGTAGTGTGTCAAGGAGCCATGTCTTTCTGCAAGCCCACAGATGGAGTGTTAAACTCTCAAGAACTTCTAGAAATTAAAATGTCCTGTTCTGAGTGAAGTGTGAGTCTCTGGCAAACTCCTCGACGTGAAGCTGGTGGATGGAGTTCCTCAGCTACAACATAATGGAGCCTGTGGGTACTACGTGCAGGAGCAATTGGGCATGTTCTGCACAGGACTGGAGATATGCAAACTGTTGTCTGGGCTCTGTCCGAGCTGGTTGTTATTGATGTGCCTATTGATGTGAAGTTCTGTGCTGATGTTATCCCTAAACTGAAGGCATTCTATTTCCTACATATGCTGCCAAGGGTAGTATATGAGTTCCAGTTAGGCAGACTGTGTGCTCAAAATATGTTAATCTATGTGGTATCTAGGCTAATACTTTGTTTTGAAATAGTTCTTATATTTTGTGCCTTGTAAAGATCTCTGTTAGCTCTACCTTATTATCTAAGCATAACTCTTGATGTTTTTTGTTGTCTTGCACAGTTCTCTTCATATGCACATTTACCTGATTTATATTTGCATAATTCTTCTTGGTGTTTTTTACGTCTTGCCTTGTACAGCTCTCTTCATACATGTGTATCTAATGCCTAAGGATTACTCCTTATGATTTATGAATATTTTAATTGTACCTTGTATAGCTCTTTATTTTCATTTGGCACTTCATTAACTTATCTAAGCATACCATAACGCATCTTGCACTTGAGAAATGATGGCATTAATAAAAACATGaaattcca

Function

NR:

description
PREDICTED: uncharacterized protein LOC107105150, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470233.2 False 1882 mRNA 0.41 2 26939760 26943228
TU2054013 False 1846 lncRNA 0.41 2 26939764 26943196
TU2054014 True 1840 lncRNA 0.41 2 26939764 26943196

Neighbor

gene id symbol gene type direction distance location
LOC118943583 cenpj coding downstream 3076 26933520 ~ 26944274 (-)
LOC110501658 cenpj coding downstream 5914 26922840 ~ 26933846 (-)
LOC110502078 LOC106582090 coding downstream 26454 26805418 ~ 26913306 (-)
LOC110501655 LOC106582091 coding downstream 187103 26714697 ~ 26752657 (-)
glra2 glra2 coding downstream 341780 26586638 ~ 26597980 (-)
LOC110501663 LOC106582084 coding upstream 206101 27149329 ~ 27186838 (-)
LOC110501665 NA coding upstream 397605 27340833 ~ 27364593 (-)
LOC110502080 wars2 coding upstream 427839 27371067 ~ 27437479 (-)
LOC110501670 LOC106582076 coding upstream 549246 27492474 ~ 27498625 (-)
LOC110501672 NA coding upstream 558463 27501691 ~ 27517629 (-)
G1794779 NA non-coding downstream 12463 26926912 ~ 26927297 (-)
G1794762 NA non-coding downstream 48811 26890731 ~ 26890949 (-)
G1794736 NA non-coding downstream 80471 26858915 ~ 26859289 (-)
G1794685 NA non-coding downstream 142875 26795748 ~ 26796885 (-)
G1794663 NA non-coding downstream 179022 26760532 ~ 26760738 (-)
G1794904 NA non-coding upstream 168633 27111861 ~ 27114211 (-)
G1794884 NA non-coding upstream 202560 27145788 ~ 27146680 (-)
G1794885 NA non-coding upstream 204482 27147710 ~ 27148363 (-)
G1794937 NA non-coding upstream 244186 27187414 ~ 27187624 (-)
G1794938 NA non-coding upstream 244805 27188033 ~ 27188306 (-)
LOC110501627 LOC106582113 other downstream 1228141 25709599 ~ 25744218 (-)
G1792433 NA other downstream 1953492 24985959 ~ 24986268 (-)
G1792345 NA other downstream 2081875 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 2090008 24848591 ~ 24849752 (-)
G1791405 NA other downstream 2612633 24326729 ~ 24327127 (-)
G1794978 NA other upstream 325434 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 798144 27741372 ~ 27770708 (-)
G1795850 NA other upstream 1037436 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 1066427 28009421 ~ 28019116 (-)
G1796204 NA other upstream 1390996 28334224 ~ 28334621 (-)

Expression


Co-expression Network