XLOC_003697 (arf4a)


Basic Information

Item Value
gene id XLOC_003697
gene name arf4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42482920 ~ 42492660 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007163
AAACTACAGGACAAAACACTCTCAGCATCACAGAGAGGAAAGATGGACAGAAAACATAAGAAAGACTTTTGACCGCGGTTTAGTTGTGAAGCGCTGAATGCTAAAGCGCTAACTTAGCGGCTCTTCCTCATTATACTTTATTGCGCCTCGAATAAGTTTAACGTTGACACTTTTTCTAGTGTTTGAGCGGTTTTTAAAATGGGTTTGACTATTTCGAGCGTATTTTCTCGATTGTTCGGGAAGAAGCAGATGAGAATTCTCATGGTTGGTCTGGATGCTGCTGGAAAAACCACAATCCTGTACAAACTGAAACTGGGAGAAATAGTGACAACAATTCCAACTATAGGAATTTCTGTCGAGACAGTCAAATACAAGAACATTTCCTTCACTGTGTGTGATGTGGGTGGTCAGGATAAGATCGGGCCTCTTATAGGAGACATCATTACTTCCAGAACATACAGGGTCTGATCTTTGTTGTGGACAGTAGTGATCGTGAACGAGCGCAGGAAGCAGCAGAAGAGCTTCAGAAGATGCTTCAGGAAGATGAACTGAGGGACGCTGTTCTGCTGATTTTTGCAAACAAACAAGATTTACCAAATGCGATGCCCATCAGCGAGTTGACAGACAAACTCGGCCTGCAGAATCTCAGAAGCAGAACTTGGTACGTCCAGGCGGCCTGTGCGACTCAAGGGACGGGTTTATACGAGGGATTAGACTGGCTTTCCGAGCAGCTCTCCAAACGCTAAACTGCACTTCCTGTTCAAACAggaagtgtgtgtttatgtgtgctgtTCCAAAGAACTTGATGAGCGACGCTGTTTCAGTTGTTACCAAAAATCCACCTGCTGATGTCAATCTTTTGGCAGAGCATTTTAGTTTCTTCTTCTGATTCGTTGCACCTTTTTTGACCTCGACTGACATTTCTTTAGATTTATTCCACTTGATGTAGCCCCATACAGTCAAGCCCGAAATCATTCACACCCCTGGCATATTATGatggtaaagttgcttttatggtacagcacggtggctcagttttTAGctctgtcgcctcgcagcaagaaggtcgctgatttgagtcccggctgggccagttttctgtgtggagtttgcatgttctccccatgttgatgtGGGAATGATCGACAGGACTTATGGCCGCCGAGTGAACTGACATTTCTTGAAAGGGACTTcgaacacacacatgctctcacaagcatgcactcacacacacctttttatgtgaattgtggggacatcaCATAGGTTTGCatggtttttatactgtaaaactgTATGACTCTAACCCCTACCCTGTCCCTAAACCACTCACAGGAGGCTGTGCAGTTTTACCTACTACAGTActcattctgtatgatttatagaccttttgagaaatgaggatcagcaatgtcctcataattcaccatCTTCTTGTAATACCTGtttcatacccatgtcattatgtGATTTGtgtcctgacacacacacacacacacacacacacatgtttgtttttgtgaaaagtgagTACATTTACGTAGACTTCTATTCATTTTATAcagcccaaaccgtatattatattgccctaaacccaaccatcacaaga

Function

symbol description
arf4a Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Is expressed in blood. Orthologous to human ARF4 (ADP ribosylation factor 4).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-109 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Is expressed in blood. Orthologous to human ARF4 (ADP ribosylation factor 4).

Ensembl:

ensembl_id ENSDARG00000103858

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007163 True 1609 mRNA 0.43 6 42482920 42492660

Neighbor

gene id symbol gene type direction distance location
XLOC_003696 zgc:110286 coding upstream 1103 42478184 ~ 42481817 (+)
XLOC_003695 si:ch1073-165f9.2 coding upstream 5148 42474694 ~ 42477772 (+)
XLOC_003694 dennd6aa coding upstream 23018 42422371 ~ 42459902 (+)
XLOC_003693 CU138553.1 coding upstream 64546 42305089 ~ 42418374 (+)
XLOC_003692 NA coding upstream 351013 42127415 ~ 42131907 (+)
XLOC_003698 arf4a coding downstream 1871 42494531 ~ 42502940 (+)
XLOC_003699 rps23 coding downstream 63735 42556395 ~ 42561215 (+)
XLOC_003700 FP067440.1 coding downstream 79582 42572242 ~ 42572982 (+)
XLOC_003701 asb14a coding downstream 92478 42585138 ~ 42599018 (+)
XLOC_003702 hesx1 coding downstream 108071 42600731 ~ 42635440 (+)
XLOC_003369 CR854846.2 misc upstream 26359838 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 29770924 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 29788657 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 29797321 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 29802892 12679732 ~ 12680028 (+)
XLOC_003691 NA non-coding upstream 384629 42098047 ~ 42098291 (+)
XLOC_003689 NA non-coding upstream 413256 42042559 ~ 42069664 (+)
XLOC_003703 LO017916.1 non-coding downstream 132711 42625371 ~ 42625487 (+)
XLOC_003707 NA non-coding downstream 347190 42839850 ~ 42883298 (+)
XLOC_003708 NA non-coding downstream 542898 43035558 ~ 43048021 (+)
XLOC_003709 CABZ01092982.1 non-coding downstream 552166 43044826 ~ 43044949 (+)

Expression


Co-expression Network