LOC110501663 (LOC106582084)


Basic Information

Item Value
gene id LOC110501663
gene name LOC106582084
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27149329 ~ 27186838 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579372.2
TTGAGTAGACAGATTTTGGGCAGAGTGAACCCTCTCGCTTCGCGTCTTCCTCTCTGTCGCGAATCAGCTGATCAGGAACTCACCAAACTGTAGTAAACGTGACAGTACGATGGGAATTGGCTATATCAAATCGAGTTTTGCCATGTTTGGGATGTTAAGAACATCTGTATTCTTCGCTTTTTGTAATTCAGTCATGCTCGGAGTCGACAACTAATAGATTCGTGGACAAAAGAAAACGGTGTCGAGCATTGAGGTGCCGGCCAGCGCAGTGCAGGAATGGATCCTCTGGGAGCACGCTCTCAGTTTGTGGAGGTCCAGACTCTGTCCACCTGGGAGTGGCAGCCAGAccctgagggagaggagaaggagtacAACTTCAGCCAGCAGGCCTTCCTATCCCCCTTCCCCTACAGAGAGGACATCAACAGGAAAATAGTGCTCTATAATGGCAATGTTGCCCTGCTGAACTGCACAGCGATCGTAAACACGAGTAATGAGACTCTGACGGACAAGAACCCTATCTCTGAGAGCATCCACGCTTACGCTGGGCCTGAACTTCGAGACGAGATGCTCAAACTGAAAGGATGTCGGACAGGCGAGGCAAAGATGACCAAAGGCTTTAACCTGGCGGCGCGCTTTATCATCCACACGGTGGGCCCCAAGTACAAAACCAAGTACAGGACAGCTGCTGAGAACTCTCTGTACAACTGCTATAGGAACGTCATGCAGCTCGCCAAAGAGCAGGCTATGGCATCTGTGGCCGTCTGTGTGGTCAGCACAACTAAGAGAGGATACCCACTGGAGGACGCCACACACATTGCCCTCAGAACGGTCCGCAGGTTTCTGGAGAACTATGGAGAGAGCATAGAGACAGTGGTGTTCGCTGTGACAGACACAGAAGAGCCCACATACAGGAAACTGCTGCCTCTCTACTACCCTCGTTCTGAGGAAGAGGAGCGTGCCAGCCTGCCCCTAATCCCGACTGACATCGGGAACTCTGAAGGTGAGCCTGTAGTCCCAGAGAGACAGATCCGCATCGCCGAGAAACCAGGCTGTCTGGAAGtTGACTCTGAGGCGGAGACTCTAGACTCAGACCTGGGCCAGGTGGGGACTCATGCGTTTTCCCGGATGGAGGGAGACGTGGACAAACAGCGCAAACTAATCCTGCAGGGCCAGCTGTCTGATGCAACCATGCAGAAACAGCACCAGAGAAATTATAACCGCTGGTTATGTCGAGCCAGAGCAGAGGACTTGTCTGACATAGCAGCACTGAAAGCCTTATATCAAACTGGTGTTGACATGTGTGGCAGGACAGTGATGGTTCTTGTGGGCAGAAATATTCCTGTCACCCTCATCGCCATGGAAAAGGCCCTGCTGTACTTCATCCATGTCATGGACCACATCACAGTGAAGGAGTATGTGATGGTTTACTTTCACACTCTGACCGGAGAACACAACCATCTGGACTCTGAATTCCTTAAGAAGCTTCATGAGATTGTAGACACCAAGTTTAAGAATAACTTGAGGGCTTTCTACTTTGTACACCCCTCTTTTCGCTCTAAGGTGTCCACCTGGTTCTTCACTACGTTCAGTGTGTCAGGGATGAAGCAGAAGGTCCATCATGTAGAGACCCTCCAGCAGCTGTTCACCTGTATCCTGCCTGAACAGATAGACATCCCTCCCTTTGTCCTGGAGTACGATGCACGGGTGTGAACCAATCAGAACtccggcagagagagagaaaagccaaGGACTCTGAGGGTGTTTCTCAAAATGCATACTTCCATATTCCACGCAAATAGGCGCAAGGGAGGGTTGAAGtatgagtccaaatcaaagtatgcGAAACAGCACCGAAGGCACTTCTTGAATGCACACTCCGTTTTGTACATATTTTGAAGTATGCATTGATGCTAGCTTCAATGGAAAGTATTAAGGAAATATGACGCAACAACGTTAGAAATGATGGAGAATTTCCTGAAATCATTGGTGGCCATTATTTTAGCTGAAGCAGAGTAAATACACTCCGACATGTTGCCTATTCACATCTCAAATGTTTCCTGACTACAATACTTTATCATTATATGTTAATAAATACATGCTGTGTTAATTTTGGCATGTTTAACTGCCTACGGACCGTAGATAACCCTATTGACTTATGTGCTTGTTAACTGGCTAGCTACCACTCTTAGCCAGCCAGATAGCTACGAATAATTTACATATTGCAAAATAttagttttaggtcatttttgcctGTTAATAAATTATCTGGTTAGCTACATTTACGATTCtcatatctagctgataattatgaAGTAAAATGTTGCTTTGTG
>XM_036959017.1
TTTGAGTAGACAGATTTTGGGCAGAGTGAACCCTCTCGCTTCGCGTCTTCCTCTCTGTCGCGAATCAGCTGATCAGGAACTCACCAAACTGTAGTAAACGTGACAGTACGATGGGAATTGGCTATATCAAATCGAGTTTTGCCATGTTTGGGATGTTAAGAACATCTGTATTCTTCGCTTTTTGTAATTCAGTCATGCTCGGAGTCGACAACTAATAGATTCGTGGACAAAAGAAAACGGTGTCGAGCATTGAGGTGCCGGCCAGCGCAGTGCAGGAATGGATCCTCTGGGAGCACGCTCTCAGTTTGTGGAGGTCCAGACTCTGTCCACCTGGGAGTGGCAGCCAGAccctgagggagaggagaaggagtacAACTTCAGCCAGCAGGCCTTCCTATCCCCCTTCCCCTACAGAGAGGACATCAACAGGAAAATAGTGCTCTATAATGGCAATGTTGCCCTGCTGAACTGCACAGCGATCGTAAACACGAGTAATGAGACTCTGACGGACAAGAACCCTATCTCTGAGAGCATCCACGCTTACGCTGGGCCTGAACTTCGAGACGAGATGCTCAAACTGAAAGGATGTCGGACAGGCGAGGCAAAGATGACCAAAGGCTTTAACCTGGCGGCGCGCTTTATCATCCACACGGTGGGCCCCAAGTACAAAACCAAGTACAGGACAGCTGCTGAGAACTCTCTGTACAACTGCTATAGGAACGTCATGCAGCTCGCCAAAGAGCAGGCTATGGCATCTGTGGCCGTCTGTGTGGTCAGCACAACTAAGAGAGGATACCCACTGGAGGACGCCACACACATTGCCCTCAGAACGGTCCGCAGGTTTCTGGAGAACTATGGAGAGAGCATAGAGACAGTGGTGTTCGCTGTGACAGACACAGAAGAGCCCACATACAGGAAACTGCTGCCTCTCTACTACCCTCGTTCTGAGGAAGAGGAGCGTGCCAGCCTGCCCCTAATCCCGACTGACATCGGGAACTCTGAAGGTGAGCCTGTAGTCCCAGAGAGACAGATCCGCATCGCCGAGAAACCAGGCTGTCTGGAAGtTGACTCTGAGGCGGAGACTCTAGACTCAGACCTGGGCCAGGTGGGGACTCATGCGTTTTCCCGGATGGAGGGAGACGTGGACAAACAGCGCAAACTAATCCTGCAGGGCCAGCTGTCTGATGCAACCATGCAGAAACAGCACCAGAGAAATTATAACCGCTGGTTATGTCGAGCCAGAGCAGAGGACTTGTCTGACATAGCAGCACTGAAAGCCTTATATCAAACTGGTGTTGACATGTGTGGCAGGACAGTGATGGTTCTTGTGGGCAGAAATATTCCTGTCACCCTCATCGCCATGGAAAAGGCCCTGCTGTACTTCATCCATGTCATGGACCACATCACAGTGAAGGAGTATGTGATGGTTTACTTTCACACTCTGACCGGAGAACACAACCATCTGGACTCTGAATTCCTTAAGAAGCTTCATGAGATTGTAGACACCAAGTTTAAGAATAACTTGAGGGCTTTCTACTTTGTACACCCCTCTTTTCGCTCTAAGGTGTCCACCTGGTTCTTCACTACGTTCAGTGTGTCAGGGATGAAGCAGAAGGTCCATCATGTAGAGACCCTCCAGCAGCTGTTCACCTGTATCCTGCCTGAACAGATAGACATCCCTCCCTTTGTCCTGGAGTACGATGCACGGGTGAGGCCCTACACACACCATTCTCTCTGTCTAGCTTACCAACCGTACTGACCTACATCTacaggactacacacacacacacactcatgcattgAGTTGTGGGTATATTCCCACATTGTATCAGATTCTAAGTGttgcactttgtgtgtgtgtgttacgatTTTAAAATGTAACATGTACCTTATCTTCAGGCTATTTTTGTTGGTTTGTTCAAAGGACTGAATTGTctgcaaaaataaaaataaccagCAAACTGTTCAGCAATACTTTTGATTAAACCCAAGACATTTGCTAAAATGGATGATCCATCACTGGAAATTAAACCAGAATTGTTATGTAGTAGAATGTTAAAGCtacaatatgtcactttttgcgtgacttatagatctgtcattctcattgaaagcaagtctaagaagcagtagatatgttc

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K24997 GDAP2; ganglioside-induced differentiation-associated protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579372.2 False 2333 mRNA 0.47 14 27149329 27186837
XM_036959017.1 True 2141 mRNA 0.48 13 27168675 27186838

Neighbor

gene id symbol gene type direction distance location
LOC110501659 NA coding downstream 206101 26939760 ~ 26943228 (-)
LOC118943583 cenpj coding downstream 212645 26933520 ~ 26944274 (-)
LOC110501658 cenpj coding downstream 215483 26922840 ~ 26933846 (-)
LOC110502078 LOC106582090 coding downstream 236023 26805418 ~ 26913306 (-)
LOC110501655 LOC106582091 coding downstream 396672 26714697 ~ 26752657 (-)
LOC110501665 NA coding upstream 153995 27340833 ~ 27364593 (-)
LOC110502080 wars2 coding upstream 184229 27371067 ~ 27437479 (-)
LOC110501670 LOC106582076 coding upstream 305636 27492474 ~ 27498625 (-)
LOC110501672 NA coding upstream 314853 27501691 ~ 27517629 (-)
LOC110501675 LOC106582077 coding upstream 352626 27539464 ~ 27544582 (-)
G1794885 NA non-coding downstream 966 27147710 ~ 27148363 (-)
G1794884 NA non-coding downstream 2649 27145788 ~ 27146680 (-)
G1794904 NA non-coding downstream 35118 27111861 ~ 27114211 (-)
G1794748 LOC107572531 non-coding downstream 184458 26896408 ~ 26964871 (-)
G1794937 NA non-coding upstream 576 27187414 ~ 27187624 (-)
G1794938 NA non-coding upstream 1195 27188033 ~ 27188306 (-)
G1794919 LOC106582083 non-coding upstream 6481 27193319 ~ 27193737 (-)
G1794920 LOC106582083 non-coding upstream 14478 27201316 ~ 27203100 (-)
G1794952 NA non-coding upstream 42434 27229272 ~ 27234648 (-)
LOC110501627 LOC106582113 other downstream 1437710 25709599 ~ 25744218 (-)
G1792433 NA other downstream 2163061 24985959 ~ 24986268 (-)
G1792345 NA other downstream 2291444 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 2299577 24848591 ~ 24849752 (-)
G1791405 NA other downstream 2822202 24326729 ~ 24327127 (-)
G1794978 NA other upstream 81824 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 554534 27741372 ~ 27770708 (-)
G1795850 NA other upstream 793826 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 822817 28009421 ~ 28019116 (-)
G1796204 NA other upstream 1147386 28334224 ~ 28334621 (-)

Expression


Co-expression Network