LOC110502080 (wars2)


Basic Information

Item Value
gene id LOC110502080
gene name wars2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27371067 ~ 27437479 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110502080
ATGACGGAGAACACCAATACGCCCTCACACCTGAAAAACAAAGCAGAGCCTCCAGGAGGGTATGTGTTCTCTGGGATCCAGCCCACGTCTGTGCCCCACCTAGGGAATTACCTTGGGGCTCTGAAGAGCTGGGTGTCCCTGCAGAGCCAGTACCCCTCAGTGCTCTACAGCATAGTGGACCTGCACTCCATCACCCAGTCCCAGGACCTCGCCCTTCTGCGGGTCAACACACTGGTCATGGTTGCCAGCCTGCTGGCCTGTGGCATTGAGACATCTATCCTCTTCCAGCAGTCACAGGTCTCTGAACACACTGAACTGTCCTGGATCCTGGGCTGCCTTGCCAGTATTCCCCCAACTCAGACACCTGCCTCAatgaaaagTAAACAGAAGAATGAGGGGAGTGTGGGGCTGTAGTCTTTCCCCGTCCTGCAGGCTGCGGATATTCTCCTTTACAAGTCCACTCACATCCCAGTAGGATAAGATCAGGTCCAACATCTGGACTTGGCTCAGGACCTAGCCCGCATCTTCAAGAACACATATGGAGACTTATTCCCTGAGCCACGTGTTCTGCTCAGTGAATTACTCTTCACACAGAAGGTCAAATCCCTCCGCGACCCCTCCAAGATGTCCAAGTCAGACCCCCAGAAGATGGCCACCGTCAACCTCATTGACTCGCCCGACGACATCGTCCTCAAAATCCGCTGTACCGTCAGACTTCACCTTCGTGGTGACCTTTGACCCTGCGGCACGCCTGGGTGTGTCCAACCTGGTGCTGATGCACGCAGCAGGTTGCACGGTGGAGGAGGCGGTGGGGCTAGACACGGGGAAGTACAAACAGCTGGTCGCCGAGGCCATGGAGGTGCGGCTCACACCAATCAGGGAGGAGATTACTTAAACAATAAATATATGCATAGGATATGCTATGGGATTTCTGTGGAAAGTCCAATGAGAACTCTCAAGCTCTAATACaataaacagacacacacgcacgtcaTCAGACACAGTCTGTGGGTAGTGAGTAATGAGTAGGCCAATGCCCTGTCAATAGTAGGCATTCTGCCTGTTCAGTTCTGGGCTCTTGTCTGCAGATGGAACATAAAGAAGAGCTCAGCCTCACTGTGATACTTGGATAGACTAACCTGGGATCCTGACTGCTTAGGATAATATTTTCACCCTCTTTGCTCACACCATCCTGGTGATGGAGCAGATCATCTGTGGGAGCTGGACTCTGATGTAGTTTTCCAGATCCATATTTACCTGGGAACTAACTAGTCAGATCACATCCAACTGCAGTTTATTTCAACTTTAGTATTTGCAGTGGCATAAGCAGCAGACTGAAAATACAGCCTATTCATATGAGCCAACAATAGCCTACAATGACTAAGGACTGTAAGCTACCAAATTTAATTTAATTCTAGACTCAGCGCAATGATGTTGGCACGagcagcaccgcagatattgagatgagcgagatgcaaCACTTTGCTCTCACGCAGTATCTGTGCAGAGATTCGCTTCACGCTGTTACAGCATGGTAGCCACAGGACTTTCATTTGCATttctttttttgtcaacgatATACACAAAACTCTCTtaatgtcaaaatggaagaaatattttaacatgtattttttttaaagatgaaaAATAAAACGGGAATATCATGATTTATATAAGTTGGcctattcaaccccctgagtcaataaatGTTGGA
>TU2054392
GTATTGGctcttttggtcctccaataatcggtatcggcgttgaaaaatcataatcggtcaacctctagtttgGACCGTGATAGTACTtcgatgatgtggacaccaaggaacttgaaactctcgacccgctccactacagccccattgatgttaacgggggcctgttcggcctgccttttcctgtggtccacgatcagctccgttgtcttgctcacattgagggaaaggttgttgtcctggtaccactctgccagttctctgacctcctccctataggcagtctcatcgttgtcggtgatcaggcctaccactgttgtgtcgtcagcaaacttaatgatggtgttggagtcgtgcttggccacgcagtcgtgggtgaacagggagtacaggaggggactaagtacacacccctgaggggccccggtgttgaggatcagcgtggcagacgtgttgttgcctacccttaccacctgggggcggcccatcaggaagtttcTTCTCCCTCTCAAGTTCCATCTCTTTTCAAACCCTTCTCTCTCCACCGCTTCTCAACAGGAGCCTCCAGGAG

Function

symbol description
wars2 Predicted to enable tryptophan-tRNA ligase activity. Acts upstream of or within sprouting angiogenesis. Predicted to be active in mitochondrial matrix. Orthologous to human WARS2 (tryptophanyl tRNA synthetase 2, mitochondrial).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006436 tryptophanyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004830 tryptophan-tRNA ligase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110502080 False 1714 mRNA 0.53 6 27371067 27437479
TU2054392 True 568 lncRNA 0.53 1 27384355 27384922

Neighbor

gene id symbol gene type direction distance location
LOC110501665 NA coding downstream 6474 27340833 ~ 27364593 (-)
LOC110501663 LOC106582084 coding downstream 184229 27149329 ~ 27186838 (-)
LOC110501659 NA coding downstream 427839 26939760 ~ 26943228 (-)
LOC118943583 cenpj coding downstream 434383 26933520 ~ 26944274 (-)
LOC110501658 cenpj coding downstream 437221 26922840 ~ 26933846 (-)
LOC110501670 LOC106582076 coding upstream 54995 27492474 ~ 27498625 (-)
LOC110501672 NA coding upstream 64212 27501691 ~ 27517629 (-)
LOC110501675 LOC106582077 coding upstream 101985 27539464 ~ 27544582 (-)
il17d il-17d coding upstream 210251 27647730 ~ 27648708 (-)
LOC110502081 ift88 coding upstream 211755 27649234 ~ 27662614 (-)
G1795020 NA non-coding downstream 41565 27328854 ~ 27329502 (-)
G1794955 NA non-coding downstream 83622 27233524 ~ 27287445 (-)
G1794952 NA non-coding downstream 136419 27229272 ~ 27234648 (-)
G1794953 NA non-coding downstream 139488 27230537 ~ 27231579 (-)
G1794920 LOC106582083 non-coding downstream 167967 27201316 ~ 27203100 (-)
G1795176 NA non-coding upstream 5612 27443091 ~ 27443296 (-)
G1795580 NA non-coding upstream 8022 27445501 ~ 27445827 (-)
G1795581 NA non-coding upstream 8402 27445881 ~ 27446178 (-)
G1795582 NA non-coding upstream 11590 27449069 ~ 27449321 (-)
G1795591 haox2 non-coding upstream 25666 27463145 ~ 27464838 (-)
G1794978 NA other downstream 84972 27268662 ~ 27286095 (-)
LOC110501627 LOC106582113 other downstream 1659448 25709599 ~ 25744218 (-)
G1792433 NA other downstream 2384799 24985959 ~ 24986268 (-)
G1792345 NA other downstream 2513182 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 2521315 24848591 ~ 24849752 (-)
LOC110501685 LOC106582064 other upstream 303893 27741372 ~ 27770708 (-)
G1795850 NA other upstream 543185 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 572176 28009421 ~ 28019116 (-)
G1796204 NA other upstream 896745 28334224 ~ 28334621 (-)
G1796239 NA other upstream 997436 28434915 ~ 28451815 (-)
G1795090 NA non-coding downstream 2283 27381868 ~ 27382072 (-)
G1795096 NA non-coding upstream 130 27385052 ~ 27385280 (-)
G1795098 NA non-coding upstream 1899 27386821 ~ 27387042 (-)
G1795162 NA non-coding upstream 48261 27433183 ~ 27433525 (-)
G1795163 NA non-coding upstream 48774 27433696 ~ 27433897 (-)

Expression


Co-expression Network