LOC110501670 (LOC106582076)


Basic Information

Item Value
gene id LOC110501670
gene name LOC106582076
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27492474 ~ 27498625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579393.2
atttttcctctctctccccagcagtGTTATGATAAGTAGTTGGTCTGCTTTCTGTCTGTGCCTTTCTACTCCTTGGGTTTCAATTCCAAACATGGTTATCCTACTaggggtctctctctcctcctctccctctctctcccctctccctccctctctctctctgtactgccAACTGTGAGCTCTCCAGAGTAAGCAAATGGCTGAGTAAAATAGAGAGAAAATCaagagacagacacagcaaaATATAGACGGGGAAAAGAAGGGAGAAATCCATTCCAATCATATCTATGGTGTAATAACTGAAGCAGGACAAAGAAGATCTGTAGTCCAGCTGTACGTAAGAGAGCAACAGAGCAACTTTGACAATTCATACTATTTTTGGCAACGTATTCTCTGTTTTGACAATACCTTGATTGAACTTTTAAGAAATAGACCAACTCTAGTGACAACTTTTCAGACTCACTGGTAAAGTAACAACAACAACTTGAGGCTTGAGTCGGGGACTAACGTTTTCTTCCAGCTTTGACCTCAAGTAGCGTAGTAAACTTTGGAATATTCTGAGTGTAACTGTTTTTTTGGAACTTATTGAACAACTCGACAGTTTTGTTTGGAATAACAGCCTCCCTCCACCATGAGTGCAGACAACTCCACCCTGTTGGAGACGGTTTTCTACGGCCATCCACCATGTGATGGCTGGACCAACAACACAGAGGGGGCCTTCTACCACCTGGGCAACACCGTCTTATTCCTGGGGTACATGGGGGGCAGCAGCGCCTACGGCTCCCTGTTCATCTTTGGTTTCATGACGCCTGCCTTCACCTGCCTGGCCCTGTGGGGCTGGATGACCATGTGTGGGGTGGATGTGTTCACCTGGAACCTGCTGCTGCTGGTGGCCTGCGTGTTCCAGATCTGCCACCTCATATACAGGCTGCAACAGGATGGTTTGGCCAGCGAGGAGCTGTTGGCCCTCTACTCAGCCACCTACCTGCCCCTGGACGTGCCCGTACAGGTGTTCAAAGACATTGTGGAGGCCTGTGAGAACAAGGTGCTGGCCCTAAGAGTAGAGGAGACGTACGCAGTGGAGGGCAAGACGCCCATCAACCAGCTATCCTTTCTGCTGTCAGGGAGGATCCGTGTGTCTCTAGAAGGACAGTTCCTCCATTACATCTTCCCACTCCAGTTCCTGGACTCTCCTGAGTGGGAGTCTCTCAGACCCAATGAGGAGGGGAACTTTCAGGTGACCCTGACGGCGGAGACGGACTGCCGCTACATCTCGTGGCGCCGGCGCCGCCTTTACATGCTGCTGTCCAAGGATCGCTACATCACCCGCCTCTTCTCCGTCATGCTGGGCAGCGACATTGCCAACAAGCTCTACTCACTCAATGATAAGCTCTTTGCCAAGAGCGGTGTGCGCCTCGACATCCGCCttcccagtctctaccatgtccTGGCCCCCTCACCCCCGGGCAGCGAGGGTGAGGTCTGTAGCCGCAGTGGTAGTGCAAGGGACCGGGTAGACCCAGTGGAGCAGCAGGAGGCAGCAGTGGTGGATGTGGTCCCGGTGCCTGCCTACCAGAAGTCAGAGCCTCCAACACCCCCGACCCCACGGCTGCAGATACAAGAGAAGTCCCCCAACCCATCAACTGCAAGCCCCCGCCAACCCCAAGGCCCACACCCCCAGCGCCAGCCCTGGCCCTCAGACATGGAGATGCTCTCTGGAGGGGAAACCGCTGGGACTCTACCAATGCGATACCAGAGAGGAAGAGCTCCTCTGGCTCCCACGGACACCCCTAAGCTGTGATAGTTTTACCAAAAGTGCAAACAGTTCCAGGTTGTCTTTATTACAGTCATGCTGTGCAGCTTATAACACTATCACAAAATGTTTATGCATATCTACAGCATTTTCCTGAGAAGACCAGTGGAACTGCAGGAAAGACAACCTGGGATATAACTATCACCACTGTCCTGGGTGGAATCAGGCCCACCCAACACCACATCCCAGTCTCTCACCTAACATTATCTCACTCCTGTGATGTCATCTGTGCATGACAATAAAGGAGAGAGTGAGACTCTGGACACTGAACATAATTATGTTGTTAACTGAATTTATTAGTTAATGTCACAGAAAATAATCATATACTCTTTTTATTATGTCCCTCACATCTCCCATTCATCTGGATGGAAAGCCTTTTGAAGTGGAGATAGGATTATTCTATTATGATTCCACATTAAACTAATCATGTGCATTAGATGTTTTAACAGCCGGGGTTGGGTTGGCTAGCTAGGGGCACGTtaatcttgtttgtttgtgcagACATAATCTGAGAGAATTATGTTTGACTGAGAGCATGCTAAAAGGGTTTTCTCTTCCTGCATGCATATTTTCAAATCATGATTCCAAATtgaacaggcagacacacacttCTGCATTTTGTCTACGTGCTTGTAAAGGTGAGATGTCTCACACACATTTAGTACATTTAGTACATTTagacagaaaacatagaacaGGGACTCTactattttgtttttgttgtcccccccccaaaaaaatgtgggCCTACATATACATAATGTGATAAACATGTATTTTCATGGGGCCAATCTTTCTCCATAAAGTTCTTGGTGAAAATA
>XM_021579392.2
TccatttttcctctctctccccagcagtGTTATGATAAGTAGTTGGTCTGCTTTCTGTCTGTGCCTTTCTACTCCTTGGGTTTCAATTCCAAACATGGTTATCCTACTaggggtctctctctcctcctctccctctctctcccctctccctccctctctctctctgtactgccAACTGTGAGCTCTCCAGAGTAAGCAAATGGCTGAGTAAAATAGAGAGAAAATCaagagacagacacagcaaaATATAGACGGGGAAAAGAAGGGAGAAATCCATTCCAATCATATCTATGGTGTAATAACTGAAGCAGGACAAAGAAGATCTGTAGTCCAGCTGTACGTAAGAGAGCAACAGAGCAACTTTGACAATTCATACTATTTTTGGCAACGTATTCTCTGTTTTGACAATACCTTGATTGAACTTTTAAGAAATAGACCAACTCTAGTGACAACTTTTCAGACTCACTGGTAAAGTAACAACAACAACTTGAGGCTTGAGTCGGGGACTAACGTTTTCTTCCAGCTTTGACCTCAAGTAGCGTAGTAAACTTTGGAATATTCTGAGTGTAACTGTTTTTTTGGAACTTATTGAACAACTCGACAGTTTTGTTTGGAATAACAGCCTCCCTCCACCATGAGTGCAGACAACTCCACCCTGTTGGAGACGGTTTTCTACGGCCATCCACCATGTGATGGCTGGACCAACAACACAGAGGGGGCCTTCTACCACCTGGGCAACACCGTCTTATTCCTGGGGTACATGGGGGGCAGCAGCGCCTACGGCTCCCTGTTCATCTTTGGTTTCATGACGCCTGCCTTCACCTGCCTGGCCCTGTGGGGCTGGATGACCATGTGTGGGGTGGATGTGTTCACCTGGAACCTGCTGCTGCTGGTGGCCTGCGTGTTCCAGATCTGCCACCTCATATACAGGCTGCAACAGGATGGTTTGGCCAGCGAGGAGCTGTTGGCCCTCTACTCAGCCACCTACCTGCCCCTGGACGTGCCCGTACAGGTGTTCAAAGACATTGTGGAGGCCTGTGAGAACAAGGTGCTGGCCCTAAGAGTAGAGGAGACGTACGCAGTGGAGGGCAAGACGCCCATCAACCAGCTATCCTTTCTGCTGTCAGGGAGGATCCGTGTGTCTCTAGAAGGACAGTTCCTCCATTACATCTTCCCACTCCAGTTCCTGGACTCTCCTGAGTGGGAGTCTCTCAGACCCAATGAGGAGGGGAACTTTCAGGTGACCCTGACGGCGGAGACGGACTGCCGCTACATCTCGTGGCGCCGGCGCCGCCTTTACATGCTGCTGTCCAAGGATCGCTACATCACCCGCCTCTTCTCCGTCATGCTGGGCAGCGACATTGCCAACAAGCTCTACTCACTCAATGATAAGCTCTTTGCCAAGAGCGGTGTGCGCCTCGACATCCGCCttcccagtctctaccatgtccTGGCCCCCTCACCCCCGGGCAGCGAGGGTGAGGTCTGTAGCCGCAGTGGTAGTGCAAGGGACCGGGTAGACCCAGTGGAGCAGCAGGAGGCAGCAGTGGTGGATGTGGTCCCGGTGCCTGCCTACCAGAAGTCAGAGCCTCCAACACCCCCGACCCCACGGCTGCAGATACAAGAGAAGTCCCCCAACCCATCAACTGCAAGCCCCCGCCAACCCCAAGGCCCACACCCCCAGCGCCAGCCCTGGCCCTCAGACATGGAGATGCTCTCTGGTGAGGACTCCACCAGCCTGGTCCTGGAGGACTTCGCTGATATGACCGGGTCCTTAATGGATTATGGGAGTGAGAGGGATTATTTGAGGTAGAGGGCAGGTTGCTGGAGCTAACACACTGGGCCACTACTTAAGCTACATGAGGGGAAACCGCTGGGACTCTACCAATGCGATACCAGAGAGGAAGAGCTCCTCTGGCTCCCACGGACACCCCTAAGCTGTGATAGTTTTACCAAAAGTGCAAACAGTTCCAGGTTGTCTTTATTACAGTCATGCTGTGCAGCTTATAACACTATCACAAAATGTTTATGCATATCTACAGCATTTTCCTGAGAAGACCAGTGGAACTGCAGGAAAGACAACCTGGGATATAACTATCACCACTGTCCTGGGTGGAATCAGGCCCACCCAACACCACATCCCAGTCTCTCACCTAACATTATCTCACTCCTGTGATGTCATCTGTGCATGACAATAAAGGAGAGAGTGAGACTCTGGACACTGAACATAATTATGTTGTTAACTGAATTTATTAGTTAATGTCACAGAAAATAATCATATACTCTTTTTATTATGTCCCTCACATCTCCCATTCATCTGGATGGAAAGCCTTTTGAAGTGGAGATAGGATTATTCTATTATGATTCCACATTAAACTAATCATGTGCATTAGATGTTTTAACAGCCGGGGTTGGGTTGGCTAGCTAGGGGCACGTtaatcttgtttgtttgtgcagACATAATCTGAGAGAATTATGTTTGACTGAGAGCATGCTAAAAGGGTTTTCTCTTCCTGCATGCATATTTTCAAATCATGATTCCAAATtgaacaggcagacacacacttCTGCATTTTGTCTACGTGCTTGTAAAGGTGAGATGTCTCACACACATTTAGTACATTTAGTACATTTagacagaaaacatagaacaGGGACTCTactattttgtttttgttgtcccccccccaaaaaaatgtgggCCTACATATACATAATGTGATAAACATGTATTTTCATGGGGCCAATCTTTCTCCATAAAGTTCTTGGTGAAAATA

Function

NR:

description
popeye domain-containing 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579393.2 False 2634 mRNA 0.49 4 27492474 27498622
XM_021579392.2 True 2777 mRNA 0.49 4 27492474 27498625

Neighbor

gene id symbol gene type direction distance location
LOC110502080 wars2 coding downstream 54995 27371067 ~ 27437479 (-)
LOC110501665 NA coding downstream 127881 27340833 ~ 27364593 (-)
LOC110501663 LOC106582084 coding downstream 305636 27149329 ~ 27186838 (-)
LOC110501659 NA coding downstream 549246 26939760 ~ 26943228 (-)
LOC118943583 cenpj coding downstream 555790 26933520 ~ 26944274 (-)
LOC110501672 NA coding upstream 3066 27501691 ~ 27517629 (-)
LOC110501675 LOC106582077 coding upstream 40839 27539464 ~ 27544582 (-)
il17d il-17d coding upstream 149105 27647730 ~ 27648708 (-)
LOC110502081 ift88 coding upstream 150609 27649234 ~ 27662614 (-)
LOC110502082 LOC106582065 coding upstream 208306 27706931 ~ 27740630 (-)
G1795591 haox2 non-coding downstream 27636 27463145 ~ 27464838 (-)
G1795582 NA non-coding downstream 43153 27449069 ~ 27449321 (-)
G1795581 NA non-coding downstream 46296 27445881 ~ 27446178 (-)
G1795580 NA non-coding downstream 46647 27445501 ~ 27445827 (-)
G1795176 NA non-coding downstream 49178 27443091 ~ 27443296 (-)
G1795603 NA non-coding upstream 21040 27519665 ~ 27519898 (-)
G1795632 LOC106582069 non-coding upstream 74934 27573559 ~ 27576953 (-)
G1795660 NA non-coding upstream 111378 27610003 ~ 27610400 (-)
G1795689 NA non-coding upstream 146198 27644823 ~ 27645027 (-)
G1794978 NA other downstream 206379 27268662 ~ 27286095 (-)
LOC110501627 LOC106582113 other downstream 1780855 25709599 ~ 25744218 (-)
G1792433 NA other downstream 2506206 24985959 ~ 24986268 (-)
G1792345 NA other downstream 2634589 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 2642722 24848591 ~ 24849752 (-)
LOC110501685 LOC106582064 other upstream 242747 27741372 ~ 27770708 (-)
G1795850 NA other upstream 482039 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 511030 28009421 ~ 28019116 (-)
G1796204 NA other upstream 835599 28334224 ~ 28334621 (-)
G1796239 NA other upstream 936290 28434915 ~ 28451815 (-)

Expression


Co-expression Network