LOC110501672


Basic Information

Item Value
gene id LOC110501672
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27501691 ~ 27517629 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579394.2
cctactagcctaacacataacacacagctagCTGGTCGCTACAgtttactgtattctattctactgtattttagtcaatgccactctgacattgctcgtcctaatatttatatatttcctaattccattattttactttagatgtgtgtgtattgctgtgaattgttagatactactgcactgcgggagctaggaacacaagcatttcgctacacccacagtaacatctgctaaatatgtgtatgtgaccaaaacaatttgatggtcctaaagcacactggTGCTGCGTTGTGTATCACAGTGCAATGATAAAACACATTTGTTGCAGCTTGGAAATTGAAACTTAATGTCCCAGAAATCTTAGCGTAACCATCAAAAACATAACTGGCTACACCGTGTTGTATAAGGAAGGACACATAAATCGGCGTCCATGCGCATGAAGGcataacagctagctagctaaCCTGAAAAATGTCCTCCATGTCTGCTGCCAGCGTCGGGCCATTGAGGGCCATTGAGGGCACAGAGAAGAAACCACTGAAACCCTGTTGTGCGTGCCCCGAGACGAAGAAAGTCAGGGATGTTTGCATCATTGAGAAGGGTGAAGAAAGTTGCACAGATCTCATCGAGGCACATAAGGATTGTATGAGGGCGCTTGGATTCAAGATTTAATATAACTCCATATAATAAGTGGTCGTGTGCCGTTGGTGGCCGGCTGTCCGGAAGGAGACCTGGGATATTTCTTGTTTGTATTTATACTGCAACCTGAATGGAAGATGTGCTGCAAGGATGGTGTTCCACTGAGTGAAATGTGTTGTCTTAATGCTCAGATTTTCTGAATGATGTGAATCTTGTTCTGCTGATTTAGAATTAAATATATGTCCTATGCAAAA
>XR_005038805.1
acctactagcctaacacataacacacagctagCTGGTCGCTACAgtttactgtattctattctactgtattttagtcaatgccactctgacattgctcgtcctaatatttatatatttcctaattccattattttactttagatgtgtgtgtattgctgtgaattgttagatactactgcactgcgggagctaggaacacaagcatttcgctacacccacagtaacatctgctaaatatgtgtatgtgaccaaaacaatttgatggtcctaaagcacactggTGCTGCGTTGTGTATCACAGTGCAATGATAAAACACATTTGTTGCAGCTTGGAAATTGAAACTTAATGTCCCAGAAATCTTAGCGTAACCATCAAAAACATAACTGGCTACACCGTGTTGTATAAGGAAGGACACATAAATCGGCGTCCATGCGCATGAAGGcataacagctagctagctaaCCTGAAAAATGTCCTCCATGTCTGCTGCCAGCGTCGGGCCATTGAGGGCCATTGAGGGCACAGAGAAGAAACCACTGAAACCCTGTTGTGCGTGCCCCGAGACGAAGAAAGTCAGGGATGTTTGCATCATTGAGAAGGGTGAAGAAAGTTGCACAGATCTCATCGAGGCACATAAGGATTGTATGAGGGCGCTTGGATTCAAGATTTAATATAACTCCATATAATAAGTGGTCGgaattgtgtacagatccttgcgaaatGAGggtgtgcattatcatgctgaaacatgagTGTGCCGTTGGTGGCCGGCTGTCCGGAAGGAGACCTGGGATATTTCTTGTTTGTATTTATACTGCAACCTGAATGGAAGATGTGCTGCAAGGATGGTGTTCCACTGAGTGAAATGTGTTGTCTTAATGCTCAGATTTTCTGAATGATGTGAATCTTGTTCTGCTGATTTAGAATTAAATATATGTCCTATGCAAAA
>XM_021579395.2
gtgaccttctcttgtgaaggcCAGACGTAAGAGAGAACAAAGGCTTAACCTGGTTTTAACTGCCAatgctccatccccctgcccaacccccctccacgccactccgGCATTCCCATGATTGCCAGATAGCAGGTTGAACTATGGGTACTGCCTGAAAAATGTCCTCCATGTCTGCTGCCAGCGTCGGGCCATTGAGGGCCATTGAGGGCACAGAGAAGAAACCACTGAAACCCTGTTGTGCGTGCCCCGAGACGAAGAAAGTCAGGGATGTTTGCATCATTGAGAAGGGTGAAGAAAGTTGCACAGATCTCATCGAGGCACATAAGGATTGTATGAGGGCGCTTGGATTCAAGATTTAATATAACTCCATATAATAAGTGGTCGTGTGCCGTTGGTGGCCGGCTGTCCGGAAGGAGACCTGGGATATTTCTTGTTTGTATTTATACTGCAACCTGAATGGAAGATGTGCTGCAAGGATGGTGTTCCACTGAGTGAAATGTGTTGTCTTAATGCTCAGATTTTCTGAATGATGTGAATCTTGTTCTGCTGATTTAGAATTAAATATATGTCCTATGCAAAA
>TU2054957
TTAGCGTAACCATCAAAAACATAACTGGCTACACCGTGTTGTATAAGCCTGAAAAATGTCCTCCATGTCTGCTGCCAGCGTCGGGCCATTGAGGGCCATTGAGGGCACAGAGAAGAAACCACTGAAACCCTGTTGTGCGTGCCCCGAGACGAAGAAAGTCAGGGATGTTTGTGTGCCGTTGGTGGCCGGCTGTCCGGAAGGAGACCTGGGATATTTCTTGTTTGTATTTATACTGCAACCTGAATGGAAGATGTGCTGCAAGGATGGTGTTCCACTGAGTGAAATGTGTTGTCTTAATGCTCAGATTTTCTGAATGATGTGAATCTTGTTCTGCTGATTTAGAATTAAATATATGTCCTATGCAAAA
>TU2054958
ctccacgccactccgGCATTCCCATGATTGCCAGATAGCAGGTTGAACTATGGGTACTGCCTGAAAAATGTCCTCCATGTCTGCTGCCAGCGTCGGGCCATTGAGGGCCATTGAGGGCACAGAGAAGAAACCACTGAAACCCTGTTGTGCGTGCCCCGAGACGAAGAAAGTCAGGGATGTTTGTGTGCCGTTGGTGGCCGGCTGTCCGGAAGGAGACCTGGGATATTTCTTGTTTGTATTTATACTGCAACCTGAATGGAAGATGTGCTGCAAGGATGGTGTTCCACTGAGTGAAATGTGTTGTCTTAATGCTCAGATTTTCTGAATGATGTGAATCTTGTTCTGCTGATTTAGAATTAAATATATGTCCTATGCAAAA

Function

NR:

description
cytochrome c oxidase copper chaperone-like

GO:

id name namespace
GO:0046688 response to copper ion biological_process
GO:0006825 copper ion transport biological_process
GO:0005758 mitochondrial intermembrane space cellular_component
GO:0016531 copper chaperone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579394.2 False 893 mRNA 0.42 4 27501691 27517461
XR_005038805.1 False 951 mRNA 0.42 5 27501691 27517462
XM_021579395.2 False 580 mRNA 0.47 4 27501691 27517629
TU2054957 False 367 lncRNA 0.45 3 27501691 27517101
TU2054958 True 379 lncRNA 0.47 3 27501691 27517538

Neighbor

gene id symbol gene type direction distance location
LOC110501670 LOC106582076 coding downstream 3066 27492474 ~ 27498625 (-)
LOC110502080 wars2 coding downstream 64212 27371067 ~ 27437479 (-)
LOC110501665 NA coding downstream 137098 27340833 ~ 27364593 (-)
LOC110501663 LOC106582084 coding downstream 314853 27149329 ~ 27186838 (-)
LOC110501659 NA coding downstream 558463 26939760 ~ 26943228 (-)
LOC110501675 LOC106582077 coding upstream 21835 27539464 ~ 27544582 (-)
il17d il-17d coding upstream 130101 27647730 ~ 27648708 (-)
LOC110502081 ift88 coding upstream 131605 27649234 ~ 27662614 (-)
LOC110502082 LOC106582065 coding upstream 189302 27706931 ~ 27740630 (-)
LOC110501685 LOC106582064 coding upstream 223746 27741372 ~ 27770708 (-)
G1795601 NA non-coding downstream 7259 27494157 ~ 27494432 (-)
G1795600 NA non-coding downstream 7553 27493913 ~ 27494138 (-)
G1795591 haox2 non-coding downstream 36853 27463145 ~ 27464838 (-)
G1795582 NA non-coding downstream 52370 27449069 ~ 27449321 (-)
G1795581 NA non-coding downstream 55513 27445881 ~ 27446178 (-)
G1795603 NA non-coding upstream 2036 27519665 ~ 27519898 (-)
G1795632 LOC106582069 non-coding upstream 55930 27573559 ~ 27576953 (-)
G1795660 NA non-coding upstream 92374 27610003 ~ 27610400 (-)
G1795689 NA non-coding upstream 127194 27644823 ~ 27645027 (-)
G1795703 NA non-coding upstream 157507 27675136 ~ 27675378 (-)
G1794978 NA other downstream 215596 27268662 ~ 27286095 (-)
LOC110501627 LOC106582113 other downstream 1790072 25709599 ~ 25744218 (-)
G1792433 NA other downstream 2515423 24985959 ~ 24986268 (-)
G1792345 NA other downstream 2643806 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 2651939 24848591 ~ 24849752 (-)
G1795850 NA other upstream 463035 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 492026 28009421 ~ 28019116 (-)
G1796204 NA other upstream 816595 28334224 ~ 28334621 (-)
G1796239 NA other upstream 917286 28434915 ~ 28451815 (-)

Expression


Co-expression Network