LOC110501675 (LOC106582077)


Basic Information

Item Value
gene id LOC110501675
gene name LOC106582077
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27539464 ~ 27544582 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579399.2
aaaaaattggagacctccacaagtctggttcatccttgggagcaatttccaaacgcctgaagCATGAGGACGATTAATAGAGCTAGGAGGTGGAGGAACCTTATCAGATCGCTGATTATGCTGGAGAGTGTATAAATACTGAGGAAACCGTGAAGGTCACCACAGACCTGACGAAGAAACCTTCTGACTGCACCAGAATCAGCGGGCTATTTCAAACTTAACAGATATTTAGTAAATAAAACCATTTAGTTGTAGCGATGGCAATGTTCGGCAAGGTGCTGGAGCCGGTGGGCTACATGCAGACCATGAGGACTTTGGTGGAGGGCATCTGTACCTACCTGGGTGGCAGTGCCTCAGCTGAAGAGACAGACCTGGCCAGGAAGAACCTGGACTACATAGACCAGGAGCTGGCTGCTGCAGGGCCGGGCCTGTTGACCGACCAGGAGGTCCATCGGCTGGAGGATGACCTGGCCGTGGTCTATTACCAGCTGGGCGCGGTCGTCAGGGCCCAGTCTGAGTTCACCAAACGGGAGACAGAGGTGTTTCTCCAGTATGTTCAGGAGCACCGGCTGGAGAGGCAGCTGACGGCACTCCACAGCCGGCTGATGGGGGTGTCGGTCCTGACAGACCAGCCGACCCTGCTGGAAGAGCTGGTCCAGAGCCGCAAGCCCAAACGCTGGGAGATGAGGGAGTTCTGTGTCAAGGTGAATTTTGTTCTAGGCACGGGTCTGCTGTGCCTCTTCACCCAGGCCTTCCTTACGGGCCGAGATCAGGCCCTGCTGATGAAGACCTGGTCTGAGCGCATGGGTGCCCTCTACAGGAAGATGAAGACCACTGGGGGTCGCTGTTCGGGCTACTTCCTACAGCAGGCGGAGGAGGACGTGCGTCAGCAGCTGCAGGAGGCCATGCAAAGTCGTTCAGCTCCCGAGGAGGCGGCAGCCGGCATTCTAAAGACCCTGGAGAAGAACTACGACTGGCTGCGCTGGGCCGTCATGGTGCACCCTGCCATGGGGCCCTTGGAAGAGGATGGGGGGGAGGGCCAGGGGAACACACTACAGCCCAACCATTTCTTGTCTGTGTCATCTGAGGCACCATGCCCTCATGTGGTGGCCTGCTACCGTGACACGCCCACCTCACTGGACAAGAACCACATCCACCAGCTGATCGTGGACCTGGAGTGGAAGATCCCCAACCCACCTCCAGAGGTGTACGCTGCCATCGAGGAGGACCCAGGGAAGGCCCGACGCTACCTGGCCTCTCGCATGCTGAAGaagctgcaggaggggctgggcTCAGCGGTGGCTGTCCATGTGGTGCCGGGCAAGATGGAGATGAAGTGTAACTTCCCCCAAGCCGCCTACTACCTGTACGAGTACAAACATAGGCTGGCCTCGGGCACCTTGTGTGTGTTTGGATAAGCGAGAGGGGGGCTGGCTAGTCTTGCAGGCTTAGGTTCAGCTGCTGCATCTGCTGGGGCTGGGCACACATGAATGAATTCACTACTTTAAAAAAACTCCAGATGTTCAGTCAACTGAAACTATGTTTCCCTTTTTATTTCCGCTGTTTCATAACCAAATGTTTTATGTAACTGACATTTCTTCACAATAAACGattagaaaaacaaaa

Function

NR:

description
uncharacterized protein LOC110501675

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579399.2 True 1626 mRNA 0.55 4 27539464 27544582

Neighbor

gene id symbol gene type direction distance location
LOC110501672 NA coding downstream 21835 27501691 ~ 27517629 (-)
LOC110501670 LOC106582076 coding downstream 40839 27492474 ~ 27498625 (-)
LOC110502080 wars2 coding downstream 101985 27371067 ~ 27437479 (-)
LOC110501665 NA coding downstream 174871 27340833 ~ 27364593 (-)
LOC110501663 LOC106582084 coding downstream 352626 27149329 ~ 27186838 (-)
il17d il-17d coding upstream 103148 27647730 ~ 27648708 (-)
LOC110502081 ift88 coding upstream 104652 27649234 ~ 27662614 (-)
LOC110502082 LOC106582065 coding upstream 162349 27706931 ~ 27740630 (-)
LOC110501685 LOC106582064 coding upstream 196793 27741372 ~ 27770708 (-)
LOC110501686 LOC106582063 coding upstream 231989 27776571 ~ 27817123 (-)
G1795603 NA non-coding downstream 19566 27519665 ~ 27519898 (-)
G1795601 NA non-coding downstream 45032 27494157 ~ 27494432 (-)
G1795600 NA non-coding downstream 45326 27493913 ~ 27494138 (-)
G1795591 haox2 non-coding downstream 74626 27463145 ~ 27464838 (-)
G1795632 LOC106582069 non-coding upstream 28977 27573559 ~ 27576953 (-)
G1795660 NA non-coding upstream 65421 27610003 ~ 27610400 (-)
G1795689 NA non-coding upstream 100241 27644823 ~ 27645027 (-)
G1795703 NA non-coding upstream 130554 27675136 ~ 27675378 (-)
G1795707 NA non-coding upstream 137593 27682175 ~ 27682438 (-)
G1794978 NA other downstream 253369 27268662 ~ 27286095 (-)
LOC110501627 LOC106582113 other downstream 1827845 25709599 ~ 25744218 (-)
G1792433 NA other downstream 2553196 24985959 ~ 24986268 (-)
G1792345 NA other downstream 2681579 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 2689712 24848591 ~ 24849752 (-)
G1795850 NA other upstream 436082 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 465073 28009421 ~ 28019116 (-)
G1796204 NA other upstream 789642 28334224 ~ 28334621 (-)
G1796239 NA other upstream 890333 28434915 ~ 28451815 (-)

Expression


Co-expression Network