LOC110502081 (ift88)


Basic Information

Item Value
gene id LOC110502081
gene name ift88
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27649234 ~ 27662614 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110502081
atgaagaccaaggagctcagGACCAGCTTCTCCAGGCCAGATAAGAAGGTGAAAATCCTGAAGAAGAAGGTGAATGACCTGATAGAGGAGAGCTGCCTGGCGCACAGCTGTGGAGTCCTACAGTTGGATGACACCCATGCCAACCTGGTGTTTGAAGCCATCAAGAATGACAAGCTTCaccagatggagagagaacgGAAAGCCCTGGCTGAGAAATTCATCATGACATCAGCCAAGCTCATCTCCCCAACATTCGCTGCTGGATTTGACTGGTGTGTCAACATGGTGAAGAGTTTCCAGTAAAACGACCTAGAGATCACCAAAGCCATCACCTACCTGAGACCGAGGGACTTCAACCAGGCTGAGGAGACTCTGAAGACGTTTGAGAAGAAAGACAGCAGAGTGAAGAGTGCTCCAGCCACGAAGCTCTCCTTCCTCTACTTCCTGAAGGACTATGACCAGGCTGACCACTATACTGACCTGGCCATGACGGCCGACCGCTACAACCCAGCGGCGCTCATCAACAAGGACGATACAGTGTTTGTGAAGAAGGACTATGAGAAGGCTACAGAGTTCTAAAAGGAGGCTCTCCGGAACGACTTGTCCTGCACTGAggccctactgtatataacctggGTCTGACCTATAAGCGTCTGGGGCATCTGGAGGAGTCTCTAGACTGTTTCCTGAAGCTCAAAGCCATCCTGAGGAACAGCGCTCATGTCATGTGTCAGCTTGCCGATCTCTTTGAGATGTTGGAGGACCCCCATCAGACCATAGAGTGGCTGCTGCAGCTGATCCGTGTGACACCCACAGACCCCCAGGTGATGGCCGAACTGGGAGAGCTCTACGACAGCGAGGGAGACAAGTTTAAGGCCTTCCAGTACTACTACGAATCCTTGAGGTATTCCCCCTCCAACATTGATGTTATTGAGTGGCTGGGGGCCTACTACATTGACACTCAGTTCTGTGAGAAGGCCGTCCAGTACTTTGAGAGAGCCACACTAATCCAGCGAACTCAAGTGAAGTGGCAGTTTATGGTGACCAGCTGCTACAAGAGAAATGGAAACTTCCAGAAAGCCCCGGAGACTTACAAAGATATCCACCGGAAATTCCTGGAAACCGTTGAATGCCTGGGTTTTCTGGTGAGGCTGTGCACAGACATGGGTCTGAAAGAGGTCCAGGACTACGCCACCAAACTGAAGAGGGTGGAGAAGATGGAGATCAGAGATCAGCGGGTTAAGTCGCCAAGGGAGGGCAGTGCTAGAGGGGCCCGGAGAGAGGGCAGCGCCAGCAGTGaTGCCTCCTATGTGGATCCACCAAAGACTGCATCCAAGAAGCACATAGAGGATGACGACTTTGCTGATGAAGAGTTGGGAGACGACCTACTACCAGAGTAGCCAGTTCCAAGTTCCCCTGATTCCCTCCTTGACAGTAAGGGCGTTTTCACATATGAAATTTGGTACACTGGTTCAGTTTCCTGGAGCATTAGTGAGAATTCTACAGAACATGTTTTGCTTCACTAGACCTGAAAATAACAGTTTCAGGGTGCGATTAGCAAGCCGCACATTCTACATGATGTTAgtgagctagctaggtagcttgtTTACAATGGGCAAAAAAGTTCCATGCTGACTCATTACAATACCTGGTACTCTGGTCCTGGATCTTGGACCCGCTACTATAGCATGGATCCGGATCATATATGTGAACAACAAGTTCAAAGAATCTATACATCGCATTCCACCAGAGTGGTGCAAACTGAGATGATTATTTTCCCATATGCTAGCCTTGATACATTTTATCACCTGGAAACTTTCTGGGAGAATCCATTGTTATTAACTCTATGGTAACCTCAGGACAGTAATACAGTTTTAACCCAGTTTAGAGGCTCTTCATTTAAATGTATACTTTATAAAATATGTTTATATTGCAAATAACTATTTTTCTAATCCGAAAGTCTTCCCTGGCTTTTTGTGTTCTGACTGAGGCAAAGAAGTGCATATATGCATCTGATTTGTCTATTTtcagatcatttaaaaaaaatgtcaccATACATTTGTGCTCTTGTTAATTTTGGATGCATGGATTTGGGTGTTAAAAAGATGAATTATAAA

Function

symbol description
ift88 Predicted to enable kinesin binding activity. Acts upstream of or within several processes, including cerebrospinal fluid circulation; plasma membrane bounded cell projection organization; and tissue homeostasis. Located in axoneme and ciliary basal body. Is expressed in forerunner cell group; head; nervous system; and pronephric duct. Orthologous to human IFT88 (intraflagellar transport 88).

NR:

description
intraflagellar transport protein 88 homolog isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110502081 True 2117 mRNA 0.47 15 27649234 27662614

Neighbor

gene id symbol gene type direction distance location
il17d il-17d coding downstream 526 27647730 ~ 27648708 (-)
LOC110501675 LOC106582077 coding downstream 104652 27539464 ~ 27544582 (-)
LOC110501672 NA coding downstream 131605 27501691 ~ 27517629 (-)
LOC110501670 LOC106582076 coding downstream 150609 27492474 ~ 27498625 (-)
LOC110502080 wars2 coding downstream 211755 27371067 ~ 27437479 (-)
LOC110502082 LOC106582065 coding upstream 44317 27706931 ~ 27740630 (-)
LOC110501685 LOC106582064 coding upstream 78761 27741372 ~ 27770708 (-)
LOC110501686 LOC106582063 coding upstream 113957 27776571 ~ 27817123 (-)
acbp acbp coding upstream 171893 27834422 ~ 27838573 (-)
LOC110501689 LOC106582060 coding upstream 240968 27903582 ~ 27912919 (-)
G1795689 NA non-coding downstream 4207 27644823 ~ 27645027 (-)
G1795660 NA non-coding downstream 38834 27610003 ~ 27610400 (-)
G1795632 LOC106582069 non-coding downstream 72281 27573559 ~ 27576953 (-)
G1795603 NA non-coding downstream 129336 27519665 ~ 27519898 (-)
G1795703 NA non-coding upstream 12522 27675136 ~ 27675378 (-)
G1795707 NA non-coding upstream 19561 27682175 ~ 27682438 (-)
G1795708 LOC106582078 non-coding upstream 20466 27683080 ~ 27688572 (-)
G1795771 NA non-coding upstream 202029 27864643 ~ 27865088 (-)
G1794978 NA other downstream 363139 27268662 ~ 27286095 (-)
LOC110501627 LOC106582113 other downstream 1937615 25709599 ~ 25744218 (-)
G1792433 NA other downstream 2662966 24985959 ~ 24986268 (-)
G1792345 NA other downstream 2791349 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 2799482 24848591 ~ 24849752 (-)
G1795850 NA other upstream 318050 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 347041 28009421 ~ 28019116 (-)
G1796204 NA other upstream 671610 28334224 ~ 28334621 (-)
G1796239 NA other upstream 772301 28434915 ~ 28451815 (-)

Expression

LOC110502081(ift88) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 0.4.
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LOC110502081(ift88) Expression in each Bioproject

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LOC110502081(ift88) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 8.
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Co-expression Network