LOC110501683 (LOC106582078)


Basic Information

Item Value
gene id LOC110501683
gene name LOC106582078
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27685606 ~ 27688574 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959028.1
TATTCCGATTAGCGAGTGGAGTTGATGAGTGCTCTTATCCTTGGTCTCGCCCCTAGCGGGTGGATCCTCAAGAAGAGAAGATTATAAAAACTCAGGTGCATCGCTCCAGAGCTCACACACGCAGCTTTCTCAGTTGGACTTGTTTCCAAACAAATCACACTTTACTCTTCTACGTTTGGAGTTCCTTGACAAGACGGCGTTAAAGAGAACCGAAAATTGAAGTTGATGGAAGTTTGCTGATATTCCAGGAAAGTGGGAGCCTCACTGTTGATAGCCACTAGCCAGTGTTGTGTGAAGGTGGTCTCAGACAAAGTTGCCTTAGAGATGAGTTGGGTTGCTCTGTACACCCAGCTGGGCGGGGTGAACAAACACTCCACCAGCCTGGGGAAGATCTGGctgtctgtcctcttcatctttcgTATCACCATCCTGGTACTGGCTGCAGAGAGCGTGTGGGGAGACGAGCAGGCTGACTTCACCTGCAACACCCAGCAGCCCGGCTGCAAGAACGTCTGCTACGACCACTTCTTCCCAGTGTCACACATCCGCCTCTGGTGCCTACAGCTGATCTTTGTGTCCACACCGGCCCTGCTGGTGGCTATGCATGTGGCTTACAGGAAGAGTGGGGACAAGCGGCACATCATCGCGGCCTCACGAAGCGGTGGGGATGACAAGACCAGGCAGGTGGACCTGGAGACTCTAAAGAGGCGGCGTCTGTCCATCACTGGGCCTCTGTGGTGGACGTACACCTGCAGCCTGTTCTTCCGCCTCATCTTTGAGGCTGGCTTTATGTACGCACTCTACTTTGTCTACGACGGCTTCAAGATGCCTCGTCTGGTGAAGTGTGAGCAATGGCCCTGCCCCAACAAGGTGGACTGCTTCATTTCACGACCTACGGAGAAGACCATATTCACCATCTTCATGGTGGTCTCCTCTGCCATCTGCATGGTGCTCAATGTGGCCGAGCTGGCCTACCTCATCGCCAAGGCCCTGATGAGGTGCTCCACCAGGATTTCCAAGAGCCGTACCTATGCTCACCCTGATCATGTGGCCCCGGACAAGTCTCTACTACAGAATAAAAAGAATCAGATGCTGCTGTCGTCTGTTACGGATTCCTCCAGCAACAAGACTGTGTGAGGACAGCCCAGTGCCTGTTCTTTTTCATTAGAGACTACACATAACTAGGGAGTAGAAATCTAtcagtgtgttgttaccatgaGATGAGACCATACTTGGATTCTAGATGCCTGTAGCAGCTGAGGATGTAGAGGATATTTCTCTCTCAGTGCCCTAAACTACTTTTTGAGTTTTAAAAGTGAACGTGCTAGAATTGGATGTATTATTGTTATTGATATCAATTTAAGGTGCTTGTATGTTTGAGCTGTATGTCTGTTCAGGGAGTGGTAGGTTGAACAGAAGTGAGAAATGGGTCTAGAGTGCCACCTTCTGGTTTACAATGTGTTTGCAGGAGTTTGCTGTTTTATTGTGGAGAGCAACCAGAATTGGTTAACATTGTGTTCAGCTTTTGTGGGAGACTTTTCCAAAGCAGAAACTcacaaatgtgcagttttgctcCAAGTTCTATTTGAGGATCACCCGTGTACACATATCTGCCTGAATTCTAACAGTGACGAGTGGAATTTCTCAAGTACCAAAGCAATtttaagatgcagtgccttgagAGAGTCGCTATCAGCAGTGTCAAATAGTACCTGATGCTGTATATTGAGCACAATGTTTCAGGGAAGATGGCTGATCCAGTTGAACATTCTGGGCAGGTTTCCTGGACCCAGATGAAGCCTGTGCCTAGACTAGATGGCATGCTCAATTAGGAATATTAATTGTAAAGTGTTTTTTGGTCCAAGAGTAGGCTTAAACTGGGTCCTGGAAACTGGCCCTTTGAGCATGCCAACTGTGACAGACATGGCCTATTGTTGTCAAGACTGGTGGTAAACCTGGCTACAGAGCCTAACTGGGGGTGTTGTCTTTCAGCTTGCTGCTTATTTTAGCCACTGAACTAATCAGTGTACCTCTTTCAATGTGAGTAAGCAGACTGATCTACTGGCAAAAATGGCTTAATGTGCTCCGTCCAAACATACATGTAGAAGTTGGAACACCATAACTTGTATCACTGTAGTGACAATCTGACTGTTACCTGGGAAGACGTAGGGACACTTACCAGTGAGATGCATCCCACACATTTTGTGATGGCTCATGATTTGGACATTGTCATGGAAAGCAAACCGTAGGCTAACTTTCTCTCAATATTCAGTTGAGGTGCTATTTGTATTGTGATTGTTTAGAGGAAATGCCAAAGGATATCTGTAAATGCAACATTTTGAAAGCCTCATGGTCACACTTCAGCAGTTAGAAAGCTGATAGATATTAATTTGAAGGATGtttgatttgtatttttttatcagCTATCTGCACTTTGACCCCCAGTCTTGAGACTgtttaataaatgtttt
>XM_021579414.2
GATTAGCGAGTGGAGTTGATGAGTGCTCTTATCCTTGGTCTCGCCCCTAGCGGGTGGATCCTCAAGAAGAGAAGATTATAAAAACTCAGGTGCATCGCTCCAGAGCTCACACACGCAGCTTTCTCAGTTGGACTTGTTTCCAAACAAATCACACTTTACTCTTCTACGTTTGGAGTTCCTTGACAAGACGGCGTTAAAGAGAACCGAAAATTGAAGTTGATGGAAGTTTGCTGATATTCCAGGAAAGTGGGAGGTGGTCTCAGACAAAGTTGCCTTAGAGATGAGTTGGGTTGCTCTGTACACCCAGCTGGGCGGGGTGAACAAACACTCCACCAGCCTGGGGAAGATCTGGctgtctgtcctcttcatctttcgTATCACCATCCTGGTACTGGCTGCAGAGAGCGTGTGGGGAGACGAGCAGGCTGACTTCACCTGCAACACCCAGCAGCCCGGCTGCAAGAACGTCTGCTACGACCACTTCTTCCCAGTGTCACACATCCGCCTCTGGTGCCTACAGCTGATCTTTGTGTCCACACCGGCCCTGCTGGTGGCTATGCATGTGGCTTACAGGAAGAGTGGGGACAAGCGGCACATCATCGCGGCCTCACGAAGCGGTGGGGATGACAAGACCAGGCAGGTGGACCTGGAGACTCTAAAGAGGCGGCGTCTGTCCATCACTGGGCCTCTGTGGTGGACGTACACCTGCAGCCTGTTCTTCCGCCTCATCTTTGAGGCTGGCTTTATGTACGCACTCTACTTTGTCTACGACGGCTTCAAGATGCCTCGTCTGGTGAAGTGTGAGCAATGGCCCTGCCCCAACAAGGTGGACTGCTTCATTTCACGACCTACGGAGAAGACCATATTCACCATCTTCATGGTGGTCTCCTCTGCCATCTGCATGGTGCTCAATGTGGCCGAGCTGGCCTACCTCATCGCCAAGGCCCTGATGAGGTGCTCCACCAGGATTTCCAAGAGCCGTACCTATGCTCACCCTGATCATGTGGCCCCGGACAAGTCTCTACTACAGAATAAAAAGAATCAGATGCTGCTGTCGTCTGTTACGGATTCCTCCAGCAACAAGACTGTGTGAGGACAGCCCAGTGCCTGTTCTTTTTCATTAGAGACTACACATAACTAGGGAGTAGAAATCTAtcagtgtgttgttaccatgaGATGAGACCATACTTGGATTCTAGATGCCTGTAGCAGCTGAGGATGTAGAGGATATTTCTCTCTCAGTGCCCTAAACTACTTTTTGAGTTTTAAAAGTGAACGTGCTAGAATTGGATGTATTATTGTTATTGATATCAATTTAAGGTGCTTGTATGTTTGAGCTGTATGTCTGTTCAGGGAGTGGTAGGTTGAACAGAAGTGAGAAATGGGTCTAGAGTGCCACCTTCTGGTTTACAATGTGTTTGCAGGAGTTTGCTGTTTTATTGTGGAGAGCAACCAGAATTGGTTAACATTGTGTTCAGCTTTTGTGGGAGACTTTTCCAAAGCAGAAACTcacaaatgtgcagttttgctcCAAGTTCTATTTGAGGATCACCCGTGTACACATATCTGCCTGAATTCTAACAGTGACGAGTGGAATTTCTCAAGTACCAAAGCAATtttaagatgcagtgccttgagAGAGTCGCTATCAGCAGTGTCAAATAGTACCTGATGCTGTATATTGAGCACAATGTTTCAGGGAAGATGGCTGATCCAGTTGAACATTCTGGGCAGGTTTCCTGGACCCAGATGAAGCCTGTGCCTAGACTAGATGGCATGCTCAATTAGGAATATTAATTGTAAAGTGTTTTTTGGTCCAAGAGTAGGCTTAAACTGGGTCCTGGAAACTGGCCCTTTGAGCATGCCAACTGTGACAGACATGGCCTATTGTTGTCAAGACTGGTGGTAAACCTGGCTACAGAGCCTAACTGGGGGTGTTGTCTTTCAGCTTGCTGCTTATTTTAGCCACTGAACTAATCAGTGTACCTCTTTCAATGTGAGTAAGCAGACTGATCTACTGGCAAAAATGGCTTAATGTGCTCCGTCCAAACATACATGTAGAAGTTGGAACACCATAACTTGTATCACTGTAGTGACAATCTGACTGTTACCTGGGAAGACGTAGGGACACTTACCAGTGAGATGCATCCCACACATTTTGTGATGGCTCATGATTTGGACATTGTCATGGAAAGCAAACCGTAGGCTAACTTTCTCTCAATATTCAGTTGAGGTGCTATTTGTATTGTGATTGTTTAGAGGAAATGCCAAAGGATATCTGTAAATGCAACATTTTGAAAGCCTCATGGTCACACTTCAGCAGTTAGAAAGCTGATAGATATTAATTTGAAGGATGtttgatttgtatttttttatcagCTATCTGCACTTTGACCCCCAGTCTTGAGACTgtttaataaatgtttt

Function

NR:

description
gap junction beta-2 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07625 GJB6, CX30; gap junction beta-6 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959028.1 False 2471 mRNA 0.47 3 27685606 27688574
XM_021579414.2 True 2427 mRNA 0.47 2 27685612 27688574

Neighbor

gene id symbol gene type direction distance location
LOC110501679 LOC106582068 coding upstream 46472 27582427 ~ 27639134 (+)
LOC110501678 LOC106582069 coding upstream 108459 27558303 ~ 27577147 (+)
LOC110501677 LOC106582070 coding upstream 127456 27549374 ~ 27558150 (+)
LOC110501676 LOC106582079 coding upstream 138565 27543249 ~ 27547218 (+)
LOC110501674 LOC106582072 coding upstream 146248 27533639 ~ 27539358 (+)
LOC110501682 LOC106582074 coding downstream 158 27688732 ~ 27696385 (+)
trnaa-ugc-173 NA coding downstream 56712 27745286 ~ 27745361 (+)
LOC110502120 sctr coding downstream 131878 27799755 ~ 27827594 (+)
LOC110501688 LOC106582045 coding downstream 192276 27880850 ~ 27882900 (+)
LOC110501690 LOC106582058 coding downstream 242378 27930952 ~ 27935316 (+)
G1795302 NA non-coding upstream 3092 27682242 ~ 27682514 (+)
G1795285 NA non-coding upstream 21412 27656698 ~ 27664194 (+)
G1795276 NA non-coding upstream 44105 27641262 ~ 27641501 (+)
G1795220 NA non-coding upstream 162973 27522356 ~ 27522633 (+)
G1795309 NA non-coding downstream 13443 27702017 ~ 27702240 (+)
G1795311 NA non-coding downstream 14802 27703376 ~ 27703905 (+)
G1795312 NA non-coding downstream 15387 27703961 ~ 27704255 (+)
G1795325 NA non-coding downstream 31389 27719963 ~ 27721390 (+)
G1795340 NA non-coding downstream 51749 27740323 ~ 27740733 (+)
G1793717 NA other upstream 1369363 26315826 ~ 26316243 (+)
G1793045 NA other upstream 1953852 25731326 ~ 25731754 (+)
G1792649 NA other upstream 2389049 25294546 ~ 25296557 (+)
LOC110501609 fam155a other upstream 2671951 24848514 ~ 25013655 (+)
G1792040 NA other upstream 2842321 24842942 ~ 24843285 (+)
G1795411 NA other downstream 215008 27898367 ~ 27912875 (+)
LOC110501693 LOC106582057 other downstream 348354 28036917 ~ 28052019 (+)
G1795550 NA other downstream 402991 28091565 ~ 28092116 (+)
LOC110502085 LOC106582160 other downstream 1289316 28977890 ~ 28984226 (+)
LOC110501700 LOC106582186 other downstream 1320050 28997763 ~ 29010281 (+)

Expression


Co-expression Network