LOC110501682 (LOC106582074)


Basic Information

Item Value
gene id LOC110501682
gene name LOC106582074
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27688732 ~ 27696385 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579411.2
CATTTGCTAACTTTTGATAGCCATATGACAAGTTAATTTTATTCTAGTGAAGTGTATAATCATAAATACCTAAATCACATACTTTATTTGACAGGCCTATGTTCTCCCCAGCTTTCCAAATGAACTATTTCTCACAGGTGGGTTactgtataggcctactgtattgtCAAAATCGCCTAATTCAGCCACTATAGTAGGCCAAAGGTCAGATGTAAAGGAATGAACGCAGAACCCACTTTTCCGGGATAACATACACCCCCAGACTGCATAGCCTATAGTTGAAGCTTGAGGgatgaataaataaaaacaagtttACAGGGGCGTGGCGTGCATTGGTCCAGGGTGATGACTTTCTGAATTCATTCATGCATGGTCACACAATGTGACAGTCGCGATAACTGGGAACTGGAGGGAGCTGCCCTTCGCGGAAACATTTCCAAGTTAAATTTGCCTCGGAAAAACGAACTTTCCTTGCGCAAGTTTGGCGGCGAATCCACGTGTGAAGAAGTTTGCGCATGAATATCTTGGCCTGGCTGCGTTTAAAAGAGTTTGGTAAGCTGGCAGAGGTGCCAGAATttggggacagggggagaggggaggttaCCAGCTTCCTTGGGAGGTCTGTAGGCTATCCGACGCACTCAAAATATGGCACCAATGGCAGACGGATATTGCTTTCGATATTTAAGTTGGGCTTCCCCAGTTTAAGGTGTCATATATATTCTGAACCCTAGTCGATGGATTTATTACCGTCAATAGAAAAACATTTTAACTGTACTTTCTCCCTAGGCTAGAAATCTTGAAGCATGGGTGACTGGAGCTTTCTGGGGCGTCTGTTGGAGAATGCACAGGAACACTCAACAGTAATCGGCAAGGTCTGGCtgactgtcctcttcatcttcagGATCCTGGTGCTGGGAGCGGCAGCCGAGGATGTGTGGGGCGACGAGCAGTCTGACTTCACCTGCAACACACAGCAGCCTGGGTGTGAGAACGTCTGCTATGATGAGGCTTTCCCCATCTCGCACATCCGCTTCTGGGTGCTGCAGATCATCTTTGTGTCCACGCCCACCCTCATCTACCTGGGTCACGTACTGCACATCGTCCGCATGGAGGAGAAGcggaaagagaaggaggaggagctgcGAAAGGCCAACAGACTCCAGGAGGAGAATGAACTCCTTTACAACGGCAAAGGGGATgcaggtggaggaagaggacgaggaggaggaggtggtaaaaAAGAGAAGCCACCTATCAGGGATGAGCATGGCAAGATCCGCATTAGGGGTGCCCTGCTGCGCACCTATGTGTTCAACATCATATTCAAGACCCTTTTTGAAGTGGGGTTCATTTTAGGTCAGTATTTTCTCTATGGCTTCCAGCTGAGGCCGCTATACAAGTGTGCACGGTGGCCCTGCCCCAACACTGTGGACTGCTTCATATCTAGGCCCACTGAAAAGACCATTTTCATCATATTTATGCTTGTGGTGGCTTGCTTGTCTCTTTTGCTGAATTTGTTAGAGATCTATCACCTTGGGTGGAAGAAAGTTAAACAGGGAATGGTCACCCCTGATCATGCATTGCTGCCCCGCTCTGATGGTGTGGGGCCTGAGTCCATGACTTCAGCCTCCAGAACTGCCCTTCCCAACCTCAGCTACCCACCGATGTACACGGACGTGACAGCTGGGAGCGGTGCCTTCCTGCCGCCCATGGCAGAAGCCTCCCCGGCAGAGTTCAAGATGGACCCCCTGCAGGAGGAGCCCTCATCCTCCTACTACAtgagcagcaacaacaaccacagGCTGACCACGCAGCAGAACTGGGCCAACCTGGCCACCGAGCAGCAGACTCGGGAGATGAaggccacctcctcctcctctccctctgataGTGAGCAGCAGCCTCGTGAAGCTgctccccccaccaccaccaccaaccctAGCTCCAGTGGGGGCAGTTTGAGTGGGGGGAATGGCGATCAGGAGGGAGGCCACGTCACCACCACAGTGGAAATGCACGAGCCCCCCGTTATGATCACAGACCCTCGACGGCTCAGCAGGGCCAGCAAGAGCAGCAGCATCAGATCCAGGCCCAAAGACCTGGCAGTATAGTCAGTCCCCCTAAATACACCTCCAACCTCCCAAAGCCCCCAATGATTTTTCTATATAAaaagtacaaaataataaaaaaatatttttgtttttttaatggagGCAATGTGAGGCAGGGGGCTGGAACTGGAGTTGTTGCCTAGTATATATCTATTAACAGCAGTTGATACCAGTGCAATTGGTGAGTTGTAGCATACGTGTTAGAATAAAAAATGCACACAGTCTGATTGTGCAATGTTGGTTAAAATGGTCTGACAAGCTGAAGGCTTCGATATACTGGACATCAGGGGACTTTATGGTTCTTATTCCAGTTTAAAATGGCCAAGTAACTTTTCTGTTTGATTTTGGTTTTAATGGCCTGGTATGTGTCAATGTGCTTTTGTCAACAGTGGTTATTGTTGTTGTGCTTATTTGATGAACATAAACGCCTATTTATTCCAATTAGGAATGATACTGTACATTCATCAAGTCGTTGAGTTTGGTTGGCAAATTGCTGAGAACCAACTTCGAATAAAACTGTTATGTGGAACAAGTACGTACAGGGTGATTTGAAACCACTTGTGTGTTTAGTATGTTTACTCTTATGCTGTTATACAGTTCCTTCAAGTTGAGCCTTtcttgaaacaagttatttttaaatcatttttttggTGTATCAGAAAGTCGCTTGCAAGACAAACTAAATCCAAACATATATGCTCTCATTCTTTCTCTAAGATGAAGAATACTGTTCAATGTCAGCAATGACACCAATATGGGGGACAGCATTTGCTTGTTCATTATCAAACTTTTATATTGTACTTTAACACTTCCTGAATTTCACAAATCTAAATaacttttatttttataatattcAGGAAATAGCCTAGCTATTTTTTGTATTATGTGTTTGAAGAGTAGCAGTGGAATCTGTAAATGCAAACTACAACTCACTGATTCATTAACTGGTCTGCAGATGCATTTATCTGTCTGATTTTTACCCAGGATCCACTTACTGAACACATCATTTACACAAACTATAACCAGATTATGGGTCAAAACTAGAAGTTGAATGTGTTCTTGTAGTCTAAAGCTGGTACAAGGTTCCATGGTTCCAGCCCCTGCTCCTACATTTGATTCTCGAATGCAGAAATTAAGCAAATAAAGTATTTGTTTTTGCCTGAAATTAAAAAGCGCACTGCCATATGGACAATGAAAAGTTGACATCCGATTTTAAGAGGttgaaaacaaaatataaaccaaATGCTTCAACTTAAGACGGTAAATAAGATTTGGTTTTTCTTAAACACAACATCACTTTTTAATCATTGCATCTTCATGTTGAGGGTAACTCACTCTCATACTTTATTGGTTTTTCTTAAAagtgctatttttttttaaacagaattgAATTATAATGAAATCTAAATTCTAAACTGTAGTCAGTTTATGACAACCAAAACAGCTATATGGTACAAAACGGACAAACGCAATGACGTTGCAAGTGTCATAACGCCAGGATGAAAAGTCCATTCTCATTTCTTATTTTTGATAGAAGTTCAACTATTACTGACTACTTCACCTGTTGTAAGCAATGGGAAGCATATGCTTCCGCCTAGTtagtgtaaatgtaatatttcacaTTGTAGATTACCTGAACCATCTTGAATAAATGAATAGCTATGCAAGTAATTGCACAACACAATCATTCACTTAAAATAGGCCTTTTCTTAAATTACTTGTGAAACATGATTGGTATAATACCACGCTTCTATGTATTTCTTACATAGTTCTTATACGTTCAAATTACCATATGCGTATAGTTTATAGTTCGAGAAGGATCATGAATAAACACAATAACAAACATTCAATGCAAACTAGAAACCATAGTTACAACCGTGGAGAGACTACCCAAGGAGAATATGCAATCCTTTGCTTATAACAGTGTTACTCTTATTGGGACAACCGTTTTTCCCAATGTATGTTACCTTTTCATTTAAATTATTTAAATGTCACAAACcacaaaaaaaatctgtgttaTTTGCATTTGTCATTTTGGTTCTCAAAGTTTATATTTTAGTAAAAAGGTAAAAGGTTTGCACATTTAGGCAAAACATGCTGTTCTAAGAAGTTTATATtggtaggagagagagtggaaaagTGGAGAGTGGAAAATGTCTTAACAGTTAAACACAACGGCTCTTTGCGTTAAAGacagtatttttttaaaaattacGTCAAATGTCATGGTCTGAGACGATTGCAGAAAGTTTGGGTTTTCAAATATAGAAAAAAGTGGGCTGTGAGTATTTCCTGTGTGCTCACTCAGTGCTTTCACTATGTTCTCAACACATTCCTGTGACTCGCTGGTTAGCTTGTATTAAAACATCACACTAATGTTGAGACAATGTTAGCTGGGTAGCTGGCCCTTTTCTTCTTCTACACACAGCAACTTGTGTATCGTTTTGAGTTGCCCGCAAGCCCCTCATCCAATAGGTTAATATACAGTAGCTTTCTTCAAACTCTTGGTGTGTGTCATGCTGAGTGTGATTTCTCTGGCCAGTCAGGGAGTAGGAACCATCTGCATTATGCTCAGAACAACAGCCTGTTTCAATGCTGTCTTAAGAGAAGTGCCTTGTGTATGACATTTTGTAAAAACAAGTTGATGTAAATGTTAATTTACCTCAAATGTTTACAAAACTGTTATTAAACAAACTTTTTGTACCATATTTCCGGTATATGTGGCAATCAATAAAA
>XM_021579413.2
CATTTGCTAACTTTTGATAGCCATATGACAAGTTAATTTTATTCTAGTGAAGTGTATAATCATAAATACCTAAATCACATACTTTATTTGACAGGCCTATGTTCTCCCCAGCTTTCCAAATGAACTATTTCTCACAGGTGGGTTactgtataggcctactgtattgtCAAAATCGCCTAATTCAGCCACTATAGTAGGCCAAAGGTCAGATGTAAAGGAATGAACGCAGAACCCACTTTTCCGGGATAACATACACCCCCAGACTGCATAGCCTATAGTTGAAGCTTGAGGgatgaataaataaaaacaagtttACAGGGGCGTGGCGTGCATTGGTCCAGGGTGATGACTTTCTGAATTCATTCATGCATGGTCACACAATGTGACAGTCGCGATAACTGGGAACTGGAGGGAGCTGCCCTTCGCGGAAACATTTCCAAGTTAAATTTGCCTCGGAAAAACGAACTTTCCTTGCGCAAGTTTGGCGGCGAATCCACGTGTGAAGAAGTTTGCGCATGAATATCTTGGCCTGGCTGCGTTTAAAAGAGTTTGGTGTCATATATATTCTGAACCCTAGTCGATGGATTTATTACCGTCAATAGAAAAACATTTTAACTGTACTTTCTCCCTAGGCTAGAAATCTTGAAGCATGGGTGACTGGAGCTTTCTGGGGCGTCTGTTGGAGAATGCACAGGAACACTCAACAGTAATCGGCAAGGTCTGGCtgactgtcctcttcatcttcagGATCCTGGTGCTGGGAGCGGCAGCCGAGGATGTGTGGGGCGACGAGCAGTCTGACTTCACCTGCAACACACAGCAGCCTGGGTGTGAGAACGTCTGCTATGATGAGGCTTTCCCCATCTCGCACATCCGCTTCTGGGTGCTGCAGATCATCTTTGTGTCCACGCCCACCCTCATCTACCTGGGTCACGTACTGCACATCGTCCGCATGGAGGAGAAGcggaaagagaaggaggaggagctgcGAAAGGCCAACAGACTCCAGGAGGAGAATGAACTCCTTTACAACGGCAAAGGGGATgcaggtggaggaagaggacgaggaggaggaggtggtaaaaAAGAGAAGCCACCTATCAGGGATGAGCATGGCAAGATCCGCATTAGGGGTGCCCTGCTGCGCACCTATGTGTTCAACATCATATTCAAGACCCTTTTTGAAGTGGGGTTCATTTTAGGTCAGTATTTTCTCTATGGCTTCCAGCTGAGGCCGCTATACAAGTGTGCACGGTGGCCCTGCCCCAACACTGTGGACTGCTTCATATCTAGGCCCACTGAAAAGACCATTTTCATCATATTTATGCTTGTGGTGGCTTGCTTGTCTCTTTTGCTGAATTTGTTAGAGATCTATCACCTTGGGTGGAAGAAAGTTAAACAGGGAATGGTCACCCCTGATCATGCATTGCTGCCCCGCTCTGATGGTGTGGGGCCTGAGTCCATGACTTCAGCCTCCAGAACTGCCCTTCCCAACCTCAGCTACCCACCGATGTACACGGACGTGACAGCTGGGAGCGGTGCCTTCCTGCCGCCCATGGCAGAAGCCTCCCCGGCAGAGTTCAAGATGGACCCCCTGCAGGAGGAGCCCTCATCCTCCTACTACAtgagcagcaacaacaaccacagGCTGACCACGCAGCAGAACTGGGCCAACCTGGCCACCGAGCAGCAGACTCGGGAGATGAaggccacctcctcctcctctccctctgataGTGAGCAGCAGCCTCGTGAAGCTgctccccccaccaccaccaccaaccctAGCTCCAGTGGGGGCAGTTTGAGTGGGGGGAATGGCGATCAGGAGGGAGGCCACGTCACCACCACAGTGGAAATGCACGAGCCCCCCGTTATGATCACAGACCCTCGACGGCTCAGCAGGGCCAGCAAGAGCAGCAGCATCAGATCCAGGCCCAAAGACCTGGCAGTATAGTCAGTCCCCCTAAATACACCTCCAACCTCCCAAAGCCCCCAATGATTTTTCTATATAAaaagtacaaaataataaaaaaatatttttgtttttttaatggagGCAATGTGAGGCAGGGGGCTGGAACTGGAGTTGTTGCCTAGTATATATCTATTAACAGCAGTTGATACCAGTGCAATTGGTGAGTTGTAGCATACGTGTTAGAATAAAAAATGCACACAGTCTGATTGTGCAATGTTGGTTAAAATGGTCTGACAAGCTGAAGGCTTCGATATACTGGACATCAGGGGACTTTATGGTTCTTATTCCAGTTTAAAATGGCCAAGTAACTTTTCTGTTTGATTTTGGTTTTAATGGCCTGGTATGTGTCAATGTGCTTTTGTCAACAGTGGTTATTGTTGTTGTGCTTATTTGATGAACATAAACGCCTATTTATTCCAATTAGGAATGATACTGTACATTCATCAAGTCGTTGAGTTTGGTTGGCAAATTGCTGAGAACCAACTTCGAATAAAACTGTTATGTGGAACAAGTACGTACAGGGTGATTTGAAACCACTTGTGTGTTTAGTATGTTTACTCTTATGCTGTTATACAGTTCCTTCAAGTTGAGCCTTtcttgaaacaagttatttttaaatcatttttttggTGTATCAGAAAGTCGCTTGCAAGACAAACTAAATCCAAACATATATGCTCTCATTCTTTCTCTAAGATGAAGAATACTGTTCAATGTCAGCAATGACACCAATATGGGGGACAGCATTTGCTTGTTCATTATCAAACTTTTATATTGTACTTTAACACTTCCTGAATTTCACAAATCTAAATaacttttatttttataatattcAGGAAATAGCCTAGCTATTTTTTGTATTATGTGTTTGAAGAGTAGCAGTGGAATCTGTAAATGCAAACTACAACTCACTGATTCATTAACTGGTCTGCAGATGCATTTATCTGTCTGATTTTTACCCAGGATCCACTTACTGAACACATCATTTACACAAACTATAACCAGATTATGGGTCAAAACTAGAAGTTGAATGTGTTCTTGTAGTCTAAAGCTGGTACAAGGTTCCATGGTTCCAGCCCCTGCTCCTACATTTGATTCTCGAATGCAGAAATTAAGCAAATAAAGTATTTGTTTTTGCCTGAAATTAAAAAGCGCACTGCCATATGGACAATGAAAAGTTGACATCCGATTTTAAGAGGttgaaaacaaaatataaaccaaATGCTTCAACTTAAGACGGTAAATAAGATTTGGTTTTTCTTAAACACAACATCACTTTTTAATCATTGCATCTTCATGTTGAGGGTAACTCACTCTCATACTTTATTGGTTTTTCTTAAAagtgctatttttttttaaacagaattgAATTATAATGAAATCTAAATTCTAAACTGTAGTCAGTTTATGACAACCAAAACAGCTATATGGTACAAAACGGACAAACGCAATGACGTTGCAAGTGTCATAACGCCAGGATGAAAAGTCCATTCTCATTTCTTATTTTTGATAGAAGTTCAACTATTACTGACTACTTCACCTGTTGTAAGCAATGGGAAGCATATGCTTCCGCCTAGTtagtgtaaatgtaatatttcacaTTGTAGATTACCTGAACCATCTTGAATAAATGAATAGCTATGCAAGTAATTGCACAACACAATCATTCACTTAAAATAGGCCTTTTCTTAAATTACTTGTGAAACATGATTGGTATAATACCACGCTTCTATGTATTTCTTACATAGTTCTTATACGTTCAAATTACCATATGCGTATAGTTTATAGTTCGAGAAGGATCATGAATAAACACAATAACAAACATTCAATGCAAACTAGAAACCATAGTTACAACCGTGGAGAGACTACCCAAGGAGAATATGCAATCCTTTGCTTATAACAGTGTTACTCTTATTGGGACAACCGTTTTTCCCAATGTATGTTACCTTTTCATTTAAATTATTTAAATGTCACAAACcacaaaaaaaatctgtgttaTTTGCATTTGTCATTTTGGTTCTCAAAGTTTATATTTTAGTAAAAAGGTAAAAGGTTTGCACATTTAGGCAAAACATGCTGTTCTAAGAAGTTTATATtggtaggagagagagtggaaaagTGGAGAGTGGAAAATGTCTTAACAGTTAAACACAACGGCTCTTTGCGTTAAAGacagtatttttttaaaaattacGTCAAATGTCATGGTCTGAGACGATTGCAGAAAGTTTGGGTTTTCAAATATAGAAAAAAGTGGGCTGTGAGTATTTCCTGTGTGCTCACTCAGTGCTTTCACTATGTTCTCAACACATTCCTGTGACTCGCTGGTTAGCTTGTATTAAAACATCACACTAATGTTGAGACAATGTTAGCTGGGTAGCTGGCCCTTTTCTTCTTCTACACACAGCAACTTGTGTATCGTTTTGAGTTGCCCGCAAGCCCCTCATCCAATAGGTTAATATACAGTAGCTTTCTTCAAACTCTTGGTGTGTGTCATGCTGAGTGTGATTTCTCTGGCCAGTCAGGGAGTAGGAACCATCTGCATTATGCTCAGAACAACAGCCTGTTTCAATGCTGTCTTAAGAGAAGTGCCTTGTGTATGACATTTTGTAAAAACAAGTTGATGTAAATGTTAATTTACCTCAAATGTTTACAAAACTGTTATTAAACAAACTTTTTGTACCATATTTCCGGTATATGTGGCAATCAATAAAA

Function

NR:

description
gap junction alpha-3 protein-like

GO: NA

KEGG:

id description
K07612 GJA3, CX46; gap junction alpha-3 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579411.2 False 4850 mRNA 0.42 3 27688732 27696385
XM_021579413.2 True 4693 mRNA 0.42 3 27688732 27696385

Neighbor

gene id symbol gene type direction distance location
LOC110501683 LOC106582078 coding upstream 158 27685606 ~ 27688574 (+)
LOC110501679 LOC106582068 coding upstream 49598 27582427 ~ 27639134 (+)
LOC110501678 LOC106582069 coding upstream 111585 27558303 ~ 27577147 (+)
LOC110501677 LOC106582070 coding upstream 130582 27549374 ~ 27558150 (+)
LOC110501676 LOC106582079 coding upstream 141691 27543249 ~ 27547218 (+)
trnaa-ugc-173 NA coding downstream 48901 27745286 ~ 27745361 (+)
LOC110502120 sctr coding downstream 124067 27799755 ~ 27827594 (+)
LOC110501688 LOC106582045 coding downstream 184465 27880850 ~ 27882900 (+)
LOC110501690 LOC106582058 coding downstream 234567 27930952 ~ 27935316 (+)
ccdc93 ccdc93 coding downstream 332077 28028462 ~ 28036764 (+)
G1795302 NA non-coding upstream 6218 27682242 ~ 27682514 (+)
G1795285 NA non-coding upstream 24538 27656698 ~ 27664194 (+)
G1795276 NA non-coding upstream 47231 27641262 ~ 27641501 (+)
G1795220 NA non-coding upstream 166099 27522356 ~ 27522633 (+)
G1795309 NA non-coding downstream 5632 27702017 ~ 27702240 (+)
G1795311 NA non-coding downstream 6991 27703376 ~ 27703905 (+)
G1795312 NA non-coding downstream 7576 27703961 ~ 27704255 (+)
G1795325 NA non-coding downstream 23578 27719963 ~ 27721390 (+)
G1795340 NA non-coding downstream 43938 27740323 ~ 27740733 (+)
G1793717 NA other upstream 1372489 26315826 ~ 26316243 (+)
G1793045 NA other upstream 1956978 25731326 ~ 25731754 (+)
G1792649 NA other upstream 2392175 25294546 ~ 25296557 (+)
LOC110501609 fam155a other upstream 2675077 24848514 ~ 25013655 (+)
G1792040 NA other upstream 2845447 24842942 ~ 24843285 (+)
G1795411 NA other downstream 207197 27898367 ~ 27912875 (+)
LOC110501693 LOC106582057 other downstream 340543 28036917 ~ 28052019 (+)
G1795550 NA other downstream 395180 28091565 ~ 28092116 (+)
LOC110502085 LOC106582160 other downstream 1281505 28977890 ~ 28984226 (+)
LOC110501700 LOC106582186 other downstream 1312239 28997763 ~ 29010281 (+)

Expression


Co-expression Network