trnaa-ugc-173


Basic Information

Item Value
gene id trnaa-ugc-173
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27745286 ~ 27745361 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnaa-ugc-173
ggtcctgtgtggctcagttggtagagcatggcacttgcaacgccagggatgtgggtttgattcccacgtgGGACCA

Function

NR:

description
cholesteryl ester transfer protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaa-ugc-173 True 76 mRNA 0.58 1 27745286 27745361

Neighbor

gene id symbol gene type direction distance location
LOC110501682 LOC106582074 coding upstream 48901 27688732 ~ 27696385 (+)
LOC110501683 LOC106582078 coding upstream 56712 27685606 ~ 27688574 (+)
LOC110501679 LOC106582068 coding upstream 106152 27582427 ~ 27639134 (+)
LOC110501678 LOC106582069 coding upstream 168139 27558303 ~ 27577147 (+)
LOC110501677 LOC106582070 coding upstream 187136 27549374 ~ 27558150 (+)
LOC110502120 sctr coding downstream 75091 27799755 ~ 27827594 (+)
LOC110501688 LOC106582045 coding downstream 135489 27880850 ~ 27882900 (+)
LOC110501690 LOC106582058 coding downstream 185591 27930952 ~ 27935316 (+)
ccdc93 ccdc93 coding downstream 283101 28028462 ~ 28036764 (+)
LOC110501693 LOC106582057 coding downstream 291556 28036917 ~ 28052019 (+)
G1795343 NA non-coding upstream 1149 27743684 ~ 27744137 (+)
G1795340 NA non-coding upstream 4553 27740323 ~ 27740733 (+)
G1795325 NA non-coding upstream 23896 27719963 ~ 27721390 (+)
G1795312 NA non-coding upstream 41031 27703961 ~ 27704255 (+)
G1795311 NA non-coding upstream 41381 27703376 ~ 27703905 (+)
G1795348 NA non-coding downstream 6609 27751970 ~ 27753655 (+)
G1795356 NA non-coding downstream 18065 27763426 ~ 27766059 (+)
G1795358 NA non-coding downstream 89161 27834522 ~ 27835306 (+)
G1795411 NA non-coding downstream 153006 27898367 ~ 27912875 (+)
G1793717 NA other upstream 1429043 26315826 ~ 26316243 (+)
G1793045 NA other upstream 2013532 25731326 ~ 25731754 (+)
G1792649 NA other upstream 2448729 25294546 ~ 25296557 (+)
LOC110501609 fam155a other upstream 2731631 24848514 ~ 25013655 (+)
G1792040 NA other upstream 2902001 24842942 ~ 24843285 (+)
G1795550 NA other downstream 346204 28091565 ~ 28092116 (+)
LOC110502085 LOC106582160 other downstream 1232529 28977890 ~ 28984226 (+)
LOC110501700 LOC106582186 other downstream 1263263 28997763 ~ 29010281 (+)

Expression


Co-expression Network