LOC110502120 (sctr)


Basic Information

Item Value
gene id LOC110502120
gene name sctr
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27799755 ~ 27827594 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470298.2
tgccagttcattttgaaTTGTCAGGTCGTCACCAGCGTGATTGCTGGTTTTCCATGCTCTctagtttttttttgttgatagCTTTTCCGATTCTAACTTTTCTGCCTAGCATTCTGTACATGCCTGATTCTGATCTGGTTTATGAActtctgtctgccctgaccctgtCTGCCGTCCAGTACCtattggactctgatctggttacgaacctctgcctgccctttgcCTGCTCCCCGTGTTATAATAAATTATCTGAGAACTGAACCATCCAcgtcctgtgtctgcatctgggtcatatcctgcgTCATTATAGGAACCTAGGaacaaacctagagaggaaccaggctccgaggggtggccagtcctcttctggctgtgcggggtggagattataagagtacatggccatttaaggacagattgttcttcaagatgttcaaatgggagacgagtggaagaccgcGTTCAGGACCACCACaaggcattatgagtaccttgtcatgccgtacgggttgatgaatgctccatcagtttcccaatcctttgtagacgagattttcagggacctgcaccggcagggtgtagtggtgtatatcgatgacattctgatttaCTCCgatacacgcgccgagcatgtgtccttggACGACTGTTGGCGCATGACCTGTATgttaaggctgagaaatgcctgttctttcagcaggccgtctccttcctaaggtatcgcatttccacatcaggggtggagatggagagtgaccgcatttcagccgtgagTAATTGgacgactcccaccacggtaaaggaggtgctacagaccaggttcccggAATAAGACGCACTATCCAGACTGTATGActcagaggagcggcccatggatcagactcccatactcccggcctcctgcctggtggcgaCGGCCGTGTGGGATCTGGacacggacattgagcaggcgctCCCCCCCAGTGTCCCGTTGGGCGTaagtacgttccgtctgctgtccgtaaCCAGTTGATCTCTTGGGCCCACACGTCTCCCTCCTCTGCTCATCCGgggatcggtcggacggtgcgctgtctgactgggaagtactggtggcccaccttggcaaaggacgtgagggtttatgtttcctgctcggtgtgtgcccagtgtaaggctccgagacacctgcccagagggatttgggcctgttcccgggaaagcagtatgcCCTTCACGTCCAGCTCGTCAGacttgttaaaggaaaaaaaatattctgccagttcgtgGTCAGCTGTAAGATTGCTACAATGTTATCCAACTACTGCATCATGGCCTACTCCAGCTGGCTGCTGGCCGAGGGAAACTACCCACACAGCCTGGTCAgtgtctccctcttctcccagaAGAGGCACCTCTGGTGGTACATCATCCTGGGCTGGGGTTCTCCAATGGTCATCATAGTAGCTTGGAGCTTGGCAAAATATATCCATGAGAATGAAGAGTAGGTTATGTCTGTATTCAAGTATTCATGTCAGAATGCTTATATGCTCCCCACCTATAGTGTGTGTATTTTCCCCCGGTTGTAAAGGTGCTGGGAGACGAGGGGATCTGGTGAATTCTCAGAGTTCCTGTTCTCCTCTTCATTGTTGTGAGTTCTGACATAACCTTTGACCCCATAACCAAGTTTGTGATTttctgttagtcagcacctcactCAAAATCAGTCTCTTATTTAGGTTACCTTTCTGTTTTTTCCTGAGTATCATAAGAATCCTGGTGGCCATGTTACGGATACAGGACATGCATGTGAATTAGTTCAACCAGTACAGGTAGTGAGTGTTTTTATTCTGTTTGACAAAAACAATTAACAGCTACAGAAAAAAAACCACTTTTGCCATGTTGATGATATCTTATGTAGTTGTATATTTGTATTTTCAGGCTTGCTATGTCCACCCTCCTTTTGGTATCTCTCTCTGGTTTGCACTACGTCCTCTTTGCATTTCTCCCACATAAAGTAAATGAAATATGGAATTGAGCTGGCTTTCGACCTCCACTCAGGTACTGTAGTGCCTTTATCCCACCTCTGTGGTTGTACTATACGTAGAGTACATTTTATGTACAAACTTCCAGTGGATCTATTTTTGGGGATACATTGAGTATACCTCAATATTTGGCTGTGCTTTGTTCTATTCTAAGGGTTTGTAGTAGCAGTTCTATACTGTTTTCTGAATGGAGAGGTAAGTTGACACCCACACAGTTAATGTTCTAGGTTATAGTGAATAGAGAGGGGATTGACTGAACCCGGGTGTTGAACTTTGACACTCCCCAGGTTCAGTATGAGGTCCAGAGGAGGTGGAAGCGATGGAGACTGGAGcagtatatacactatatatacaaaagtatgtggacacccattcaaataaGTGGATTGAGCTATTTaaaccacacctgttgctgacagctgCATAAAATCGAGCAGACAGCCATGCAatcaccatagacaaacattggcagtagaatggccttactgaagagctcagtaactttcaatgtggcaccatcataggattccacctttccaacaagtcagtttgtaaaatgtatgccctgctagaACTTCACCGGTCAGCTGTAAGTGATGCtattgtgaagtgtaaacgtctagcagcaacaacgactcagccgcgaactggtaggccacacaagctcacagaacgagaccgccaagtgcaacactcactaccgagttccaaaccgtCAGCACAATAGCTGTTAacctggagcttcatgaaatgggtttccatgaacAAGCAGCCGCacgcaagcctaagatcacc
>TU2054687
CGCAGCTCACCTGAGGGACACACAGATTCACATCAGTAGTTGTCTACATCTATGTACATAGTGTGTGGAAGCGAGCGGTTCACGTACAACCGGTGTTGAGAGACATCTGGGAAAACATGAGAGAGAGGGTCAGCTGTAAGATTGCTACAATGTTATCCAACTACTGCATCATGGCCTACTCCAGCTGGCTGCTGGCCGAGGGAAACTACCCACACAGCCTGGTCAgtgtctccctcttctcccagaAGAGGCACCTCTGGTGGTACATCATCCTGGGCTGGGGTTCTCCAATGGTCATCATAGTAGCTTGGAGCTTGGCAAAATATATCCATGAGAATGAAGAGTAGGTTATGTCTGTATTCAAGTATTCATGTCAGAATGCTTATATGCTCCCCACCTATAGTGTGTGTATTTTCCCCCGGTTGTAAAGGTGCTGGGAGACGAGGGGATCTGGTGAATTCTCAGAGTTCCTGTTCTCCTCTTCATTGTTGTGAGTTCTGACATAACCTTTGACCCCATAACCAAGTTTGTGATTttctgttagtcagcacctcactCAAAATCAGTCTCTTATTTAGGTTACCTTTCTGTTTTTTCCTGAGTATCATAAGAATCCTGGTGGCCATGTTACGGATACAGGACATGCATGTGAATTAGTTCAACCAGTACAGGCTTGCTATGTCCACCCTCCTTTTGGTATCTCTCTCTGGTTTGCACTACGTCCTCTTTGCATTTCTCCCACATAAAGTAAATGAAATATGGAATTGAGCTGG

Function

symbol description
sctr Enables peptide hormone binding activity and secretin receptor activity. Involved in G protein-coupled receptor signaling pathway. Located in cytoplasmic microtubule.

NR:

description
PREDICTED: secretin receptor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470298.2 False 2822 mRNA 0.48 4 27820452 27827594
TU2054687 True 773 lncRNA 0.46 4 27799755 27826797

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-173 NA coding upstream 75091 27745286 ~ 27745361 (+)
LOC110501682 LOC106582074 coding upstream 124067 27688732 ~ 27696385 (+)
LOC110501683 LOC106582078 coding upstream 131878 27685606 ~ 27688574 (+)
LOC110501679 LOC106582068 coding upstream 181318 27582427 ~ 27639134 (+)
LOC110501678 LOC106582069 coding upstream 243305 27558303 ~ 27577147 (+)
LOC110501688 LOC106582045 coding downstream 53256 27880850 ~ 27882900 (+)
LOC110501690 LOC106582058 coding downstream 103358 27930952 ~ 27935316 (+)
ccdc93 ccdc93 coding downstream 200868 28028462 ~ 28036764 (+)
LOC110501693 LOC106582057 coding downstream 209323 28036917 ~ 28052019 (+)
LOC110501694 LOC106582055 coding downstream 244826 28072420 ~ 28076571 (+)
G1795356 NA non-coding upstream 54393 27763426 ~ 27766059 (+)
G1795348 NA non-coding upstream 66797 27751970 ~ 27753655 (+)
G1795343 NA non-coding upstream 76315 27743684 ~ 27744137 (+)
G1795340 NA non-coding upstream 79719 27740323 ~ 27740733 (+)
G1795325 NA non-coding upstream 99062 27719963 ~ 27721390 (+)
G1795358 NA non-coding downstream 6928 27834522 ~ 27835306 (+)
G1795411 NA non-coding downstream 70773 27898367 ~ 27912875 (+)
G1795476 NA non-coding downstream 152537 27980131 ~ 27980376 (+)
G1795484 NA non-coding downstream 159824 27987418 ~ 27988471 (+)
G1795519 NA non-coding downstream 215755 28043349 ~ 28043675 (+)
G1793717 NA other upstream 1504209 26315826 ~ 26316243 (+)
G1793045 NA other upstream 2088698 25731326 ~ 25731754 (+)
G1792649 NA other upstream 2523895 25294546 ~ 25296557 (+)
LOC110501609 fam155a other upstream 2806797 24848514 ~ 25013655 (+)
G1792040 NA other upstream 2977167 24842942 ~ 24843285 (+)
G1795550 NA other downstream 263971 28091565 ~ 28092116 (+)
LOC110502085 LOC106582160 other downstream 1150296 28977890 ~ 28984226 (+)
LOC110501700 LOC106582186 other downstream 1181030 28997763 ~ 29010281 (+)

Expression


Co-expression Network