LOC110501688 (LOC106582045)


Basic Information

Item Value
gene id LOC110501688
gene name LOC106582045
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27880850 ~ 27882900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579423.2
TTGTTGCAGACTGGCAGAAATCGCTCGAATCTTTTTCTCTGTTCAGCTCGGAGATCCAGCGCGTGTCCAGCCATGCCAAAACGAATACTTCCCTGTCAATTTTGTGAAGTTCAGTGATACTGGCACACCGCTCCAAGGTGAACTACACTTAATTAAGGTTACAACATATttgttgtttttaatttttttctaACCCTGGAATAAAGTGATTCCTTTTTGGTGCACTCGCTTTTTCTGCAGAGAATTTTAGCGCACTCGCAACCTTTCACCATTGCTTCCCAAAGGAAAACGGACTTTTTAGCGCTTGTTTCTCGGACTCTCCAGAGGAAGCGTGTCGTTGCTCCTGTGGTTGGCATCGTCATGGTGTTAGCTCTTATTATAGCGATACCGCTTCTGGTCCAAGCGTCCAAGACAGACGCGCACTACGAGATGATGGGCACCTGTCGGATGATATGTGATCCATACAACCCCAAACCCAGCGCCAATGCTCTGGAAGTCATGCAGGACCTGAGCGTCATACCACCCCCGGCGTTCTCACATGGGACTAAAGGCGAGCCGGGTCGGCCGGGGAAACCCGGACCGAGAGGTCCACCCGGCGAACCGGGTCCACCAGGTCCAAGAGGACCGCCGGGGGATAGGGGGGACTCGGGGAAACCGGGCTATCCCGGGCATACCACTGGAGAGACGGCGGAGGGGACTGTGAGCAGTGACAGGACCGAAAATGCCGAGGGCCTAGAGTCCGCAATTGGCGGCACAAAAATTGCTTTTTACGTGGGTCTTAAAAACCCCCACGAGGGATACGAGGTGCTAAGGTTCGATGACGTGGTAACAAATCTAGGGAACCATTACGACCCTTCTACCGGCAAGTTCACGTGCCAAGTGTCCGGGATATACTACTTTACATACCATGTATTAATGCGCGGGGGCGACGGGACAAGCATGTGGGCAGATTTGTGCAGAAACGGACAGGTTCGCGCCAGTGCGATAGCCCAGGACGCAGACCAGAACTATGACTATGCCAGCAACAGTGTAGTGCTTCACCTAGACTCCGGGGACGAGATCTACATCAAGCTGGACGGAGGAAAGGCGCATGGGGGAAACAACAACAAGTACAGCACTTTTTCCGGTTTCATTTTGTATCCGGACTAAACCGCTTCCCAGACATGCAGGGATGTGAACTCTACTATCATTTATTAGACTCTATCATAACTAGAGCAAGTTGCCCATTGTCCGGGCGCCACTGTAAGCGGATGTGTGTCATCTGTTTGTATTTGGGGGGTTTGGGGCGCCAAGACTTGCCAACCGCTCAAATACAGACGACATTTCCGTGTGTTGTGATATTTTGTTGCTTGAACGTCTGTCTGTGTTTCCACTCAAGATATAGCCTTCTAAGATATTTATGTATCAAAAATAAGCAACAAACATCTAAATAAGGAGTAAGATGTCATATGTATTGGTCCACCAAGGACCGAATGTTACAACATGTTTTGTCTTAGTAGCTTATTCCATTACAGTAAGTATTTCAATAAATTATGTTTTCTATTA

Function

NR:

description
complement C1q-like protein 2

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K23284 C1QL; C1q-related factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579423.2 True 1545 mRNA 0.49 2 27880850 27882900

Neighbor

gene id symbol gene type direction distance location
LOC110502120 sctr coding upstream 53256 27799755 ~ 27827594 (+)
trnaa-ugc-173 NA coding upstream 135489 27745286 ~ 27745361 (+)
LOC110501682 LOC106582074 coding upstream 184465 27688732 ~ 27696385 (+)
LOC110501683 LOC106582078 coding upstream 192276 27685606 ~ 27688574 (+)
LOC110501679 LOC106582068 coding upstream 241716 27582427 ~ 27639134 (+)
LOC110501690 LOC106582058 coding downstream 48052 27930952 ~ 27935316 (+)
ccdc93 ccdc93 coding downstream 145562 28028462 ~ 28036764 (+)
LOC110501693 LOC106582057 coding downstream 154017 28036917 ~ 28052019 (+)
LOC110501694 LOC106582055 coding downstream 189520 28072420 ~ 28076571 (+)
LOC110502084 NA coding downstream 353320 28236220 ~ 28400108 (+)
G1795358 NA non-coding upstream 45544 27834522 ~ 27835306 (+)
G1795356 NA non-coding upstream 114791 27763426 ~ 27766059 (+)
G1795348 NA non-coding upstream 127195 27751970 ~ 27753655 (+)
G1795343 NA non-coding upstream 136713 27743684 ~ 27744137 (+)
G1795411 NA non-coding downstream 15467 27898367 ~ 27912875 (+)
G1795476 NA non-coding downstream 97231 27980131 ~ 27980376 (+)
G1795484 NA non-coding downstream 104518 27987418 ~ 27988471 (+)
G1795519 NA non-coding downstream 160449 28043349 ~ 28043675 (+)
G1795544 NA non-coding downstream 204482 28087382 ~ 28087586 (+)
G1793717 NA other upstream 1564607 26315826 ~ 26316243 (+)
G1793045 NA other upstream 2149096 25731326 ~ 25731754 (+)
G1792649 NA other upstream 2584293 25294546 ~ 25296557 (+)
LOC110501609 fam155a other upstream 2867195 24848514 ~ 25013655 (+)
G1792040 NA other upstream 3037565 24842942 ~ 24843285 (+)
G1795550 NA other downstream 208665 28091565 ~ 28092116 (+)
LOC110502085 LOC106582160 other downstream 1094990 28977890 ~ 28984226 (+)
LOC110501700 LOC106582186 other downstream 1125724 28997763 ~ 29010281 (+)

Expression


Co-expression Network