LOC110501689 (LOC106582060)


Basic Information

Item Value
gene id LOC110501689
gene name LOC106582060
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27903582 ~ 27912919 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959036.1
CTCATTTTTGCAACCTCAGCCCCAAATCAGATGACTTCCACTATGTGTCAAATGGGTGGGTTTTATGTTTTTTTACATAATGATGCGTTGTTATAAGAGGGTCTTGATGAGGATCTCAGGGGTGTTGTCTGTCACTTTGGAGTAACATGGAGACAtcagtagaaagaggagaggatcaCATCAGCTCGTTCTACCAGAGTAACCCACTGCTTGACTTGGACATGAAACTGAGCAGGACGGACATGTACACCTTCCAGAGCAGCGATCTAAAACCAGCCAAGGCCAGAGGAGCACAGCGATGTCTGAATGTTATTGCCGTTTACCTCGTCCTTCTGACTGCACTGAATATCTTCCTCCTTTACAAAGTCTTTTCGATGGAGTCTAGTTGTTTCTCCTCCTCTGGCTCCAGGACAACGATGCTGACCGACATCCACATCCCCCTGGGGATGAACCAGGAGGAGGACCTCCGTACACTGGCCAGAAACACCAGCCTGGAGTCCAACTCTCTCAGAGGAGACCTGGGGAGGTTACAGACCCAGGTCAGCAGCCTATGTGGAGAGGATGGACAGCTGGGCCAGCtgaggacagacctgggtgtggTCAATGCCAGCACCACTCTCCTTCAGGACACAGTGAAAACACTCAGATTCCTCAAAGCTTCACCAGGCCCACAGGGACCTATTGGTCCACCTGGTGCGAGGGGGGCAACTGGTgtgaggggggagaagggagacaCAGGTGAGACAGGACAAAAAGGAGACCCTGGAGTTGATGGCCAGACTGGTGCCAAGGGAAAACCAGGGGAACCAGGACCCAAAGGTGAAGATGGTGCCACTGGACCACAAGGACCAGCTGGTGCACCCGACAGTGCAGCCACTAATTGTTCAGGACCCCCTGGGCTGCCAGGACCACAGGGACCAAAGGGGGATATGGGACACATTGGTTTACCAGGGATATCAGGCCAGAACGGAACCAAAGGGGACACTGGAGTTCAGGGGCGTGATGGAGTAAAAGGGGCCCGTGGTCTGAAGGGTAACACAGGGCTGACAGGAGAGCCTGGACCCATAGGACCTGAAGGACCAAGAGGACCTGCTGGTGTTAATGGAACAAGAGGACTTGCtgGTCTTCCAGGGTTGCAGGGAAGTCCTGGAAGTCAAGGTCCACGTGGAGAAAAGGGTGAAAGAGCAGCTGGACCAGTGAATGTGCGTATTGTTGGTGGAGGTGCTCGtgggagagtggaggtgatgTGGTTGGGGCAGTGGGGTACAGTGTGTGACGACAGCTTCGACACAGTGGATGGGACGGTGCTCTGCAAGACGCTGGGGTACCAAAGAGCCTCTGCAGTCTTCACGGCAAGCCCCGGAGTGGGTAAGATCTGGTTTGATGACCTGCGCTGCACAGGCACAGAGGCCAGTGTGTTTGACTGCCCCCACAACGGCATGGGCATCAACAATTGTCAACACAATGAGGACGCtggggtgcagtgtgtgtgagtgtgtcctgGATCCAAAAGAGAGACTCCTGGACTCCATCAAAAAGACTGGAGGAgagatgcatagagagagagagagacacacacacacacacacacacacacttgatgcATCTACTTTGTCTCATCTTATTAAAACAACATTTATAGGCATTTCAATAAACATGGCATTTAACTAACATGAAGCTAACTTATAATGATATAATAGTACCCTGGATGAAAGTTTATACAGAAAACAACATTTATAGGCATTTCAATAAACATGGCATTTAACTAACATGAAGCTAacttataataatataatagtaccCTGGATGAAAGTTTATACAGATAAAAACTGAATGGCATTTTGTAAACCAGTTTCATCAGTTTGAAGTAAAACAGTGAAAAATCAGA
>XM_036959035.1
AGCTCATTTTTGCAACCTCAGCCCCAAATCAGATGACTTCCACTATGTGTCAAATGGGTGGGTTTTATGTTTTTTTACATAATGATGCGTTGTTATAAGAGGGTCTTGATGAGGATCTCAGGGGTGTTGTCTGTCACTTTGGAGTAACATGGAGACAtcagtagaaagaggagaggatcaCATCAGCTCGTTCTACCAGAGTAACCCACTGCTTGACTTGGACATGAAACTGAGCAGGACGGACATGTACACCTTCCAGAGCAGCGATCTAAAACCAGCCAAGGCCAGAGGAGCACAGCGATGTCTGAATGTTATTGCCGTTTACCTCGTCCTTCTGACTGCACTGAATATCTTCCTCCTTTACAAAGTCTTTTCGATGGAGTCTAGTTGTTTCTCCTCCTCTGGCTCCAGGACAACGATGCTGACCGACATCCACATCCCCCTGGGGATGAACCAGGAGGAGGACCTCCGTACACTGGCCAGAAACACCAGCCTGGAGTCCAACTCTCTCAGAGGAGACCTGGGGAGGTTACAGACCCAGGTCAGCAGCCTATGTGGAGAGGATGGACAGCTGGGCCAGCtgaggacagacctgggtgtggTCAATGCCAGCACCACTCTCCTTCAGGACACAGTGAAAACACTCAGATTCCTCAAAGCTTCACCAGGCCCACAGGGACCTATTGGTCCACCTGGTGCGAGGGGGGCAACTGGTgtgaggggggagaagggagacaCAGGTGAGACAGGACAAAAAGGAGACCCTGGAGTTGATGGCCAGACTGGTGCCAAGGGAAAACCAGGGGAACCAGGACCCAAAGGTGAAGATGGTGCCACTGGACCACAAGGACCAGCTGGTGCACCCGACAGTGCAGCCACTAATTGTTCAGGACCCCCTGGGCTGCCAGGACCACAGGGACCAAAGGGGGATATGGGACACATTGGTTTACCAGGGATATCAGGCCAGAACGGAACCAAAGGGGACACTGGAGTTCAGGGGCGTGATGGAGTAAAAGGGGCCCGTGGTCTGAAGGGTAACACAGGGCTGACAGGAGAGCCTGGACCCATAGGACCTGAAGGACCAAGAGGACCTGCTGGTGTTAATGGAACAAGAGGACTTGCtgGTCTTCCAGGGTTGCAGGGAAGTCCTGGAAGTCAAGGTCCACGTGGAGAAAAGGGTGAAAGAGCAGCTGGACCAGtgacaGTGAATGTGCGTATTGTTGGTGGAGGTGCTCGtgggagagtggaggtgatgTGGTTGGGGCAGTGGGGTACAGTGTGTGACGACAGCTTCGACACAGTGGATGGGACGGTGCTCTGCAAGACGCTGGGGTACCAAAGAGCCTCTGCAGTCTTCACGGCAAGCCCCGGAGTGGGTAAGATCTGGTTTGATGACCTGCGCTGCACAGGCACAGAGGCCAGTGTGTTTGACTGCCCCCACAACGGCATGGGCATCAACAATTGTCAACACAATGAGGACGCtggggtgcagtgtgtgtgagtgtgtcctgGATCCAAAAGAGAGACTCCTGGACTCCATCAAAAAGACTGGAGGAgagatgcatagagagagagagagacacacacacacacacacacacacacttgatgcATCTACTTTGTCTCATCTTATTAAAACAACATTTATAGGCATTTCAATAAACATGGCATTTAACTAACATGAAGCTAACTTATAATGATATAATAGTACCCTGGATGAAAGTTTATACAGAAAACAACATTTATAGGCATTTCAATAAACATGGCATTTAACTAACATGAAGCTAacttataataatataatagtaccCTGGATGAAAGTTTATACAGATAAAAACTGAATGGCATTTTGTAAACCAGTTTCATCAGTTTGAAGTAAAACAGTGAAAAATCAGA

Function

NR:

description
macrophage receptor MARCO-like

GO: NA

KEGG:

id description
K13884 MARCO; macrophage receptor with collagenous structure

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959036.1 False 1888 mRNA 0.50 14 27903582 27912917
XM_036959035.1 True 1896 mRNA 0.50 14 27903582 27912919

Neighbor

gene id symbol gene type direction distance location
acbp acbp coding downstream 65009 27834422 ~ 27838573 (-)
LOC110501686 LOC106582063 coding downstream 86459 27776571 ~ 27817123 (-)
LOC110501685 LOC106582064 coding downstream 132874 27741372 ~ 27770708 (-)
LOC110502082 LOC106582065 coding downstream 162952 27706931 ~ 27740630 (-)
LOC110502081 ift88 coding downstream 240968 27649234 ~ 27662614 (-)
LOC110501691 LOC106582059 coding upstream 96502 28009421 ~ 28019116 (-)
LOC110502083 LOC101162407 coding upstream 145974 28058893 ~ 28062683 (-)
LOC110501696 LOC106582163 coding upstream 625786 28538705 ~ 28548565 (-)
trnan-guu-200 NA coding upstream 807140 28720059 ~ 28720298 (-)
LOC110501699 NA coding upstream 906411 28819330 ~ 28826708 (-)
G1795771 NA non-coding downstream 38494 27864643 ~ 27865088 (-)
G1795708 LOC106582078 non-coding downstream 215010 27683080 ~ 27688572 (-)
G1795707 NA non-coding downstream 221144 27682175 ~ 27682438 (-)
G1795703 NA non-coding downstream 228204 27675136 ~ 27675378 (-)
G1795777 LOC106582058 non-coding upstream 18120 27931039 ~ 27935284 (-)
G1795871 NA non-coding upstream 110819 28023738 ~ 28023937 (-)
G1795885 LOC106582057 non-coding upstream 131332 28044251 ~ 28044507 (-)
G1795896 LOC106582055 non-coding upstream 159956 28072875 ~ 28075589 (-)
G1795914 NA non-coding upstream 182510 28095429 ~ 28095647 (-)
G1794978 NA other downstream 617487 27268662 ~ 27286095 (-)
LOC110501627 LOC106582113 other downstream 2191963 25709599 ~ 25744218 (-)
G1792433 NA other downstream 2917314 24985959 ~ 24986268 (-)
G1792345 NA other downstream 3045697 24856824 ~ 24857885 (-)
G1795850 NA other upstream 67745 27980664 ~ 27981379 (-)
G1796204 NA other upstream 421305 28334224 ~ 28334621 (-)
G1796239 NA other upstream 521996 28434915 ~ 28451815 (-)
G1796401 NA other upstream 713219 28626138 ~ 28626891 (-)

Expression


Co-expression Network