LOC110501690 (LOC106582058)


Basic Information

Item Value
gene id LOC110501690
gene name LOC106582058
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27930952 ~ 27935316 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579425.2
TGGGAAACGTGTGGGAGAAGCTGAGTGATGTGAGGAGTTAGTGAAGATCGAACTGTCATATAGACAGTGGTGAAAAGCTCGTGGCTGCGAGAGGAGCGTGCGATTCCTTGTCAGTCTTGTCATAGTCGACTACCATGACACGTTGGTGCGCGTTACGCACGAGGGATGTCAACAATTTAGAAATCAATATGTGCACCAAATCAGAGAGGGAGTAATTATCCTTTAGTGTGCACCGTATAACTTCATTCTTGTCATATTTGGATTCAAATACACACAAACAAGTGGAATTGGTTGGGAGCCTGCAACCATTTTCAGTGATGGAGGGGCAAAGGGATGTACACAGCCCGGAGTTGAGTGAAGGGGAGAGCGTTTCTCCTTCTCCAAGTCTGCCTTCGCCACCCATCCTGCCTCTCCAAGCAGCGCAGCAGGCGCACAGAACCACCAACTTTTTTATTGACAATATTCTACGGCCAGATTTCGGCTGCAGGAAGGAGCAGGGCTTAGGTGCGAGGGAGAGGTCGCAGACTTCCAGCCGAGAACGCGCCCACCCTTTGGTCGCCAGACCGACTCATCCTGGAACGCCATGCCAGGACTCCAATTGCAGCAGCGACAgcacttcttcctcctcctcgtccttgGCCTTGTCTCCAACCCCCAAAAAGAGCACCTCGTCCTCGAAAGCCAACGACAGCTCCGGAGGTAGCACGCCCAAGTTCGGCGAGAACACTTCTCCTGTTATGGTTGTGAACGGCGTTAGTGGCGGCGCAGCGCCCTCCCCCGAGTCCCAACCGCTGCTGTGGCCTGCCTGGGTGTATTGCACTAGATACTCGGACAGGCCCTCATCTGTAGGCCCAAGGACACGGAAATTGAAAAAGACGAAAAACGAAAAGGAAGACAAGCGACCCAGAACGGCGTTCACGGCTGAGCAGCTTCAAAGACTGAAGACGGAGTTCCAGGCCAACCGTTACATTACCGAGCAGAGGAGACAGTCTCTAGCCCAGGAGCTCAACCTCAATGAGTCACAAATCAAAATCTGGTTCCAGAACAAACGGGCCAAAATCAAAAAGGCCAACGGCTATAAGAACGGCCTGGCTCTCCAGCTCATGGCGCAAGGATTGTACAACCATTCCACCACCACCATTCAGGAAGACAAGGAGGAGAGTGACTGAGCCTTCGCTTGCCCCAAATGTGCTACAAACTCGGAAAACTATGGTGCAGGAGTCACCTTTTGGGGACGAAATATTTGTGGATAGTCAAGGCTAGTGTAAAATATGTTCAATTTGTTGATAGGCTTGTGTATGAACATAAACGATACAAATATGCATACAAGCTACGAACATGATGGAAAATGAATAGCCAAAAATTAGACTGTATAGATAATTTAAGGAGAAGGGGATACAGTACTACTCACCCTGCACTTGGATAATGATATGATTGCTATCTTTGTCGCTTTAGGCCTAATGTGTGATCTCTCTCTTATATCAAACCTCGGTGAATTTACAGACTGCGTGATCTGCCACTTCAAGCCAAAGATTTTATCGAAATAACAGCCTGAAAAAAAAACATCTATGAATCTCTCTCTTATAGACTATACTTTCTTCCTGAACTGCGAGTCCCTAACAATCAGTAGgccactgtttttttttttcgttGCCTGCCGCTTGATGTATTGCCTCAACTACGTGTGGGCCTGAAAGATTGGCCTATATGACTCATCTCGTGTTGGATTCGCGATATCTTGGAATACCACAACGAAATATATGTGATCTCCCTCGACAGTTAGAGGGAGTATGggagtatattatctactacatCTAAACCATGTTTCCAAATTAACATTTTTATATTGGAAAAAAGGCAACACTACTCTGTTTTTGTATTGTGCACTACTCTGTGCAATAGGTTCAAGGATTAAATTAATAAATCGTAGTGTCTATGGA
>XM_021579426.2
GGAAACGTGTGGGAGAAGCTGAGTGATGTGAGGAGTTAGTGAAGATCGAACTGTCATATAGACAGTGGTGAAAAGCTCGTGGCTGCGAGAGGAGCGTGCGATTCCTTGTCAGTCTTGTCATAGTCGACTACCATGACACGTTGGTGCGCGTTACGCACGAGGGATGTCAACAATTTAGAAATCAATATGTGCACCAAATCAGAGAGGGAGTAATTATCCTTTAGTGTGCACCGTATAACTTCATTCTTGTCATATTTGGATTCAAATACACACAAACAAGTGGAATTGGTTGGGAGCCTGCAACCATTTTCAGTGATGGAGGGGCAAAGGGATGTACACAGCCCGGAGTTGAGTGAAGGGGAGAGCGTTTCTCCTTCTCCAAGTCTGCCTTCGCCACCCATCCTGCCTCTCCAAGCAGCGCAGCAGGCGCACAGAACCACCAACTTTTTTATTGACAATATTCTACGGCCAGATTTCGGCTGCAGGAAGGAGCAGGGCTTAGGTGCGAGGGAGAGGTCGCAGACTTCCAGCCGAGAACGCGCCCACCCTTTGGTCGCCAGACCGACTCATCCTGGAACGCCATGCCAGGACTCCAATTGCAGCAGCGACAgcacttcttcctcctcctcgtccttgGCCTTGTCTCCAACCCCCAAAAAGAGCACCTCGTCCTCGAAAGCCAACGACAGCTCCGGAGGTAGCACGCCCAAGTTCGGCGAGAACACTTCTCCTGTTATGGTTGTGAACGGCGTTAGTGGCGGCGCAGCGCCCTCCCCCGAGTCCCAACCGCTGCTGTGGCCTGCCTGGGTGTATTGCACTAGATACTCGGACAGGCCCTCATCTGGCCCAAGGACACGGAAATTGAAAAAGACGAAAAACGAAAAGGAAGACAAGCGACCCAGAACGGCGTTCACGGCTGAGCAGCTTCAAAGACTGAAGACGGAGTTCCAGGCCAACCGTTACATTACCGAGCAGAGGAGACAGTCTCTAGCCCAGGAGCTCAACCTCAATGAGTCACAAATCAAAATCTGGTTCCAGAACAAACGGGCCAAAATCAAAAAGGCCAACGGCTATAAGAACGGCCTGGCTCTCCAGCTCATGGCGCAAGGATTGTACAACCATTCCACCACCACCATTCAGGAAGACAAGGAGGAGAGTGACTGAGCCTTCGCTTGCCCCAAATGTGCTACAAACTCGGAAAACTATGGTGCAGGAGTCACCTTTTGGGGACGAAATATTTGTGGATAGTCAAGGCTAGTGTAAAATATGTTCAATTTGTTGATAGGCTTGTGTATGAACATAAACGATACAAATATGCATACAAGCTACGAACATGATGGAAAATGAATAGCCAAAAATTAGACTGTATAGATAATTTAAGGAGAAGGGGATACAGTACTACTCACCCTGCACTTGGATAATGATATGATTGCTATCTTTGTCGCTTTAGGCCTAATGTGTGATCTCTCTCTTATATCAAACCTCGGTGAATTTACAGACTGCGTGATCTGCCACTTCAAGCCAAAGATTTTATCGAAATAACAGCCTGAAAAAAAAACATCTATGAATCTCTCTCTTATAGACTATACTTTCTTCCTGAACTGCGAGTCCCTAACAATCAGTAGgccactgtttttttttttcgttGCCTGCCGCTTGATGTATTGCCTCAACTACGTGTGGGCCTGAAAGATTGGCCTATATGACTCATCTCGTGTTGGATTCGCGATATCTTGGAATACCACAACGAAATATATGTGATCTCCCTCGACAGTTAGAGGGAGTATGggagtatattatctactacatCTAAACCATGTTTCCAAATTAACATTTTTATATTGGAAAAAAGGCAACACTACTCTGTTTTTGTATTGTGCACTACTCTGTGCAATAGGTTCAAGGATTAAATTAATAAATCGTAGTGTCTATGGA

Function

NR:

description
homeobox protein engrailed-1-B-like isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09319 EN; homeobox protein engrailed

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579425.2 False 1940 mRNA 0.47 2 27930952 27935316
XM_021579426.2 True 1935 mRNA 0.47 2 27930954 27935316

Neighbor

gene id symbol gene type direction distance location
LOC110501688 LOC106582045 coding upstream 48052 27880850 ~ 27882900 (+)
LOC110502120 sctr coding upstream 103358 27799755 ~ 27827594 (+)
trnaa-ugc-173 NA coding upstream 185591 27745286 ~ 27745361 (+)
LOC110501682 LOC106582074 coding upstream 234567 27688732 ~ 27696385 (+)
LOC110501683 LOC106582078 coding upstream 242378 27685606 ~ 27688574 (+)
ccdc93 ccdc93 coding downstream 93146 28028462 ~ 28036764 (+)
LOC110501693 LOC106582057 coding downstream 101601 28036917 ~ 28052019 (+)
LOC110501694 LOC106582055 coding downstream 137104 28072420 ~ 28076571 (+)
LOC110502084 NA coding downstream 300904 28236220 ~ 28400108 (+)
trnaa-ugc-174 NA coding downstream 354909 28290225 ~ 28290297 (+)
G1795411 NA non-coding upstream 18077 27898367 ~ 27912875 (+)
G1795358 NA non-coding upstream 95646 27834522 ~ 27835306 (+)
G1795356 NA non-coding upstream 164893 27763426 ~ 27766059 (+)
G1795348 NA non-coding upstream 177297 27751970 ~ 27753655 (+)
G1795476 NA non-coding downstream 44815 27980131 ~ 27980376 (+)
G1795484 NA non-coding downstream 52102 27987418 ~ 27988471 (+)
G1795519 NA non-coding downstream 108033 28043349 ~ 28043675 (+)
G1795544 NA non-coding downstream 152066 28087382 ~ 28087586 (+)
G1795546 NA non-coding downstream 152863 28088179 ~ 28088401 (+)
G1793717 NA other upstream 1614709 26315826 ~ 26316243 (+)
G1793045 NA other upstream 2199198 25731326 ~ 25731754 (+)
G1792649 NA other upstream 2634395 25294546 ~ 25296557 (+)
LOC110501609 fam155a other upstream 2917297 24848514 ~ 25013655 (+)
G1795550 NA other downstream 156249 28091565 ~ 28092116 (+)
LOC110502085 LOC106582160 other downstream 1042574 28977890 ~ 28984226 (+)
LOC110501700 LOC106582186 other downstream 1073308 28997763 ~ 29010281 (+)
G1797582 NA other downstream 1808876 29744192 ~ 29744854 (+)

Expression


Co-expression Network