ccdc93 (ccdc93)


Basic Information

Item Value
gene id ccdc93
gene name ccdc93
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28028462 ~ 28036764 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579428.2
GGTATTGCAACTTTTAGAACAGTTGCATCGCTTCAAATGCACCATTCGTGTTACCTCAATACTCACTTTATCaactctctcatcactctactgtggCCGTGGTACAGTCGATATTTAGCTGAGTTTACCCTACTTGCATTGAAATCGTAAACACAATTTCTTACGGAATGACCAAAGTCATATGCTTTCGTCATGTGACTACACACCACACCAGTCCAACATGGCGGCCACGTCTGTTTTCCAGAGAGTGAGGACAGGGTCGAAAATAGGAGCTCAATATGATCAAGAAGGAAATCTTATTCAGGTTGAAACACGGGAGGACGAGGAGCAGAGTGTCAAGCTTGCAGAAATCCTGGAACTTCTGCTTGCTGCTGGATACTTTAGAGCCCGAATCAAAGGACTGGGACCTTTTGATAAGGTGGTTGGAGGGATGACATGGTGCATCACAACATGTAACTTCGACATTGACGTGGATCTACTGTTCCAGGAAAATTCAACTATTGGACAGAAAATagctctcacagagaaaataGTGTCTGTTCTGCCCAAAATGAAGTGCCCTCACCGCCTGGAGCCCCATCAGATCCAAGGGCTGGATTTCATCCATATATTTCCAGTGATACAGTGGCTGGTGAAGAGAGCCATAGAGAcgagggaggagatgggagactaTGTGAGGGCCTACTCTGTCTCTCAGTTCCAGAAGACCCACAGCTTTCCTGAGGATGAAGACTTCCTGCAGAGAAAGGAGAAGGCTGTGAAAGCAGTCCTAGATGTATCAGAAGTGTATAAACCTCAGAGGAAGTACAAGAGACAGGTTGAAGCAGGAGAGCTGCTGGATGAAGAGTCCAGGGTTCACTCCACCTTGCTGGAGTATGGAAGAATGTCAGATTACCTTCTACGATATGGATTCAGCAAGCAGACAAAACAGGACAAGACAGAGGATCGGAAAGCCTCGTTGACCCCGGGCTCTCAGGCCACGCCTCAAGGGATGACAGAGGTGtcgcaggaggaggaggacctgcaGGCAGCAGAGGAGATGCGCATCAAAACACTGATGACCAGCATGGCTGCCATGGCGACTGAGGAGGGGAGGCTAACAGCTAGCACCGTGGGCCAGATAGTTGGGCTACAGTCTGAGGAGATTAAACAGATAGCATCTGAGTACGCTGAGAAGCAGTCAGAGCTGTCTACAGAGGATCGTCCAGAGCGGTACGGGCCAGTCCAGCAACACCGAAGGATGGTAACCTCTCTAAACAAACAGATCCAACAGAAAACCAAGCAGTTGGAGGAGCTACAAGCCAAGCGCTTGGAGGTAAAATCAGGGTGTGAGCAGGCTAAGAGCAAACTGATGGAGGccacagagcagacagagagactggagaaAGAGCTGAGTGCCCTGGAAGAGGCTGAGGGCCAGGCGGATACTGGTCTGTTGGAGAAGCTGAGGGCTCTGGTAGGCATGAATGAGAACCTAAAGCACCAGGAGCAGGAATTCCGAACACACTGTAGAGAGGAGATGGTTCGCCTGCAGCAGAACATTGAGAACCTGAAGATTGAGTCAGGAGATGATACGGAGGATGAGAAGgAGAGGAGTCAGCTAATAGAAAAGCAGTACAACACAGACAAAGAGAAGCTACAGAAAATCAGACTATTGATGGCCCGTAGGAACCGTGAGATCGCCGTCCTGCAGAGGAAGATAGATGAGGTGCCGAGCAGGGCAGAACTGACCCAGTATCAGAAAAGGTTTATTGAGCTCTATGGCCAAGTTTCAGCAACACATAAAGAGACCAAGCAGTTCTTCACCTTGTATAACACATTAGATGACAAGAAGGTTTACCTGGAGAAGGAGGTGAACTTGCTGAATTCCATCCATGACAACTTCCAACAGGCAATGGCATCTTCGGGGGCCAAGGAACAGTTCTTGAGACAGATGGAGCAGATAGTCGAGGGAATCAAACAAAGCCGCATCAAGATGGAGAAGAAGAAGCAGGAGAACAAGATGAGGAGAGACCAGCTGAACGATGAGTACCTCGAGCTGCTGGATAAACAGAGGCTCTACTTCAAAACTGTCAAGGACTTCAAAGAGGAGTGCCGGAAGAATGAAATGCTGCTATCCAAGCTGAGAACTAAGGGTGCTTCGTAACTCAAATAATCTCTTATTGTTTATAAAAACTCATCTCAAAACAAATCTCAAATCTCATCAGTCAATGACTTTGTCTTGCTGTCAGAATTATGTATTCTCTTATTGGAGGTCATCATTGTTTTGTCTTATTCTGCCTATTGTATTGTGCTTTGAGATTCCATGTTTATTTGCAGCATGTAGTTAGGGATGTCACTCGTGGCAGGGCAGAGGGATTCTTGAGAGAAGGACATTAACTGCCCTGTGCACTGTGACGTGAGGAATGTTCGCTCTACTTATGTGCAATTGGCTCTAACGTGCAGGGCTATCTGTACAGTTGTATTCATTAGCTTTCTCAGATGTTGATTAGAGTGTAACAGTGCAGAATGAGGCATGGTTGACACTGTTACTAAACTACAGCATTTCAAATTAATAAATGCTATGCAGAAATATGGTTCACGTTTATGCTGACAATTTTTttcaatcaaaatcaaatgttttaCCCGTGTCTTATTCTCTGTCTATCGTTTCCAACAGTTTACTATCAAGTTGGCACTTAATAAAATAAACTATGCACAGTCA
>XM_036959039.1
GGTATTGCAACTTTTAGAACAGTTGCATCGCTTCAAATGCACCATTCGTGTTACCTCAATACTCACTTTATCaactctctcatcactctactgtggCCGTGGTACAGTCGATATTTAGCTGAGTTTACCCTACTTGCATTGAAATCGTAAACACAATTTCTTACGGAATGACCAAAGTCATATGCTTTCGTCATGTGACTACACACCACACCAGTCCAACATGGCGGCCACGTCTGTTTTCCAGAGAGTGAGGACAGGGTCGAAAATAGGAGCTCAATATGATCAAGAAGGAAATCTTATTCAGGTTGAAACACGGGAGGACGAGGAGCAGAGTGTCAAGCTTGCAGAAATCCTGGAACTTCTGCTTGCTGCTGGATACTTTAGAGCCCGAATCAAAGGACTGGGACCTTTTGATAAGGTGGTTGGAGGGATGACATGGTGCATCACAACATGTAACTTCGACATTGACGTGGATCTACTGTTCCAGGAAAATTCAACTATTGGACAGAAAATagctctcacagagaaaataGTGTCTGTTCTGCCCAAAATGAAGTGCCCTCACCGCCTGGAGCCCCATCAGATCCAAGGGCTGGATTTCATCCATATATTTCCAGTGATACAGTGGCTGGTGAAGAGAGCCATAGAGAcgagggaggagatgggagactaTGTGAGGGCCTACTCTGTCTCTCAGTTCCAGAAGACCCACAGCTTTCCTGAGGATGAAGACTTCCTGCAGAGAAAGGAGAAGGCTGTGAAAGCAGTCCTAGATGTATCAGAAGTGTATAAACCTCAGAGGAAGTACAAGAGACAGGTTGAAGCAGGAGAGCTGCTGGATGAAGAGTCCAGGGTTCACTCCACCTTGCTGGAGTATGGAAGAATGTCAGATTACCTTCTACGATATGGATTCAGCAAGCAGACAAAACAGGACAAGACAGAGGATCGGAAAGCCTCGTTGACCCCGGGCTCTCAGGCCACGCCTCAAGGGATGACAGAGGTGtcgcaggaggaggaggacctgcaGGCAGCAGAGGAGATGCGCATCAAAACACTGATGACCAGCATGGCTGCCATGGCGACTGAGGAGGGGAGGCTAACAGCTAGCACCGTGGGCCAGATAGTTGGGCTACAGTCTGAGGAGATTAAACAGATAGCATCTGAGTACGCTGAGAAGTCAGAGCTGTCTACAGAGGATCGTCCAGAGCGGTACGGGCCAGTCCAGCAACACCGAAGGATGGTAACCTCTCTAAACAAACAGATCCAACAGAAAACCAAGCAGTTGGAGGAGCTACAAGCCAAGCGCTTGGAGGTAAAATCAGGGTGTGAGCAGGCTAAGAGCAAACTGATGGAGGccacagagcagacagagagactggagaaAGAGCTGAGTGCCCTGGAAGAGGCTGAGGGCCAGGCGGATACTGGTCTGTTGGAGAAGCTGAGGGCTCTGGTAGGCATGAATGAGAACCTAAAGCACCAGGAGCAGGAATTCCGAACACACTGTAGAGAGGAGATGGTTCGCCTGCAGCAGAACATTGAGAACCTGAAGATTGAGTCAGGAGATGATACGGAGGATGAGAAGgAGAGGAGTCAGCTAATAGAAAAGCAGTACAACACAGACAAAGAGAAGCTACAGAAAATCAGACTATTGATGGCCCGTAGGAACCGTGAGATCGCCGTCCTGCAGAGGAAGATAGATGAGGTGCCGAGCAGGGCAGAACTGACCCAGTATCAGAAAAGGTTTATTGAGCTCTATGGCCAAGTTTCAGCAACACATAAAGAGACCAAGCAGTTCTTCACCTTGTATAACACATTAGATGACAAGAAGGTTTACCTGGAGAAGGAGGTGAACTTGCTGAATTCCATCCATGACAACTTCCAACAGGCAATGGCATCTTCGGGGGCCAAGGAACAGTTCTTGAGACAGATGGAGCAGATAGTCGAGGGAATCAAACAAAGCCGCATCAAGATGGAGAAGAAGAAGCAGGAGAACAAGATGAGGAGAGACCAGCTGAACGATGAGTACCTCGAGCTGCTGGATAAACAGAGGCTCTACTTCAAAACTGTCAAGGACTTCAAAGAGGAGTGCCGGAAGAATGAAATGCTGCTATCCAAGCTGAGAACTAAGGGTGCTTCGTAACTCAAATAATCTCTTATTGTTTATAAAAACTCATCTCAAAACAAATCTCAAATCTCATCAGTCAATGACTTTGTCTTGCTGTCAGAATTATGTATTCTCTTATTGGAGGTCATCATTGTTTTGTCTTATTCTGCCTATTGTATTGTGCTTTGAGATTCCATGTTTATTTGCAGCATGTAGTTAGGGATGTCACTCGTGGCAGGGCAGAGGGATTCTTGAGAGAAGGACATTAACTGCCCTGTGCACTGTGACGTGAGGAATGTTCGCTCTACTTATGTGCAATTGGCTCTAACGTGCAGGGCTATCTGTACAGTTGTATTCATTAGCTTTCTCAGATGTTGATTAGAGTGTAACAGTGCAGAATGAGGCATGGTTGACACTGTTACTAAACTACAGCATTTCAAATTAATAAATGCTATGCAGAAATATGGTTCACGTTTATGCTGACAATTTTTttcaatcaaaatcaaatgttttaCCCGTGTCTTATTCTCTGTCTATCGTTTCCAACAGTTTACTATCAAGTTGGCACTTAATAAAATAAACTATGCACAGTCA
>XM_036959040.1
GGTATTGCAACTTTTAGAACAGTTGCATCGCTTCAAATGCACCATTCGTGTTACCTCAATACTCACTTTATCaactctctcatcactctactgtggCCGTGGTACAGTCGATATTTAGCTGAGTTTACCCTACTTGCATTGAAATCGTAAACACAATTTCTTACGGAATGACCAAAGTCATATGCTTTCGTCATGTGACTACACACCACACCAGTCCAACATGGCGGCCACGTCTGTTTTCCAGAGAGTGAGGACAGGGTCGAAAATAGGAGCTCAATATGATCAAGAAGGAAATCTTATTCAGGTTGAAACACGGGAGGACGAGGAGCAGAGTGTCAAGCTTGCAGAAATCCTGGAACTTCTGCTTGCTGCTGGATACTTTAGAGCCCGAATCAAAGGACTGGGACCTTTTGATAAGGTGGTTGGAGGGATGACATGGTGCATCACAACATGTAACTTCGACATTGACGTGGATCTACTGTTCCAGGAAAATTCAACTATTGGACAGAAAATagctctcacagagaaaataGTGTCTGTTCTGCCCAAAATGAAGTGCCCTCACCGCCTGGAGCCCCATCAGATCCAAGGGCTGGATTTCATCCATATATTTCCAGTGATACAGTGGCTGGTGAAGAGAGCCATAGAGAcgagggaggagatgggagactaTGTGAGGGCCTACTCTGTCTCTCAGTTCCAGAAGACCCACAGCTTTCCTGAGGATGAAGACTTCCTGCAGAGAAAGGAGAAGGCTGTGAAAGCAGTCCTAGATGTATCAGAAGTGTATAAACCTCAGAGGAAGTACAAGAGACAGGTTGAAGCAGGAGAGCTGCTGGATGAAGAGTCCAGGGTTCACTCCACCTTGCTGGAGTATGGAAGACGATATGGATTCAGCAAGCAGACAAAACAGGACAAGACAGAGGATCGGAAAGCCTCGTTGACCCCGGGCTCTCAGGCCACGCCTCAAGGGATGACAGAGGTGtcgcaggaggaggaggacctgcaGGCAGCAGAGGAGATGCGCATCAAAACACTGATGACCAGCATGGCTGCCATGGCGACTGAGGAGGGGAGGCTAACAGCTAGCACCGTGGGCCAGATAGTTGGGCTACAGTCTGAGGAGATTAAACAGATAGCATCTGAGTACGCTGAGAAGTCAGAGCTGTCTACAGAGGATCGTCCAGAGCGGTACGGGCCAGTCCAGCAACACCGAAGGATGGTAACCTCTCTAAACAAACAGATCCAACAGAAAACCAAGCAGTTGGAGGAGCTACAAGCCAAGCGCTTGGAGGTAAAATCAGGGTGTGAGCAGGCTAAGAGCAAACTGATGGAGGccacagagcagacagagagactggagaaAGAGCTGAGTGCCCTGGAAGAGGCTGAGGGCCAGGCGGATACTGGTCTGTTGGAGAAGCTGAGGGCTCTGGTAGGCATGAATGAGAACCTAAAGCACCAGGAGCAGGAATTCCGAACACACTGTAGAGAGGAGATGGTTCGCCTGCAGCAGAACATTGAGAACCTGAAGATTGAGTCAGGAGATGATACGGAGGATGAGAAGgAGAGGAGTCAGCTAATAGAAAAGCAGTACAACACAGACAAAGAGAAGCTACAGAAAATCAGACTATTGATGGCCCGTAGGAACCGTGAGATCGCCGTCCTGCAGAGGAAGATAGATGAGGTGCCGAGCAGGGCAGAACTGACCCAGTATCAGAAAAGGTTTATTGAGCTCTATGGCCAAGTTTCAGCAACACATAAAGAGACCAAGCAGTTCTTCACCTTGTATAACACATTAGATGACAAGAAGGTTTACCTGGAGAAGGAGGTGAACTTGCTGAATTCCATCCATGACAACTTCCAACAGGCAATGGCATCTTCGGGGGCCAAGGAACAGTTCTTGAGACAGATGGAGCAGATAGTCGAGGGAATCAAACAAAGCCGCATCAAGATGGAGAAGAAGAAGCAGGAGAACAAGATGAGGAGAGACCAGCTGAACGATGAGTACCTCGAGCTGCTGGATAAACAGAGGCTCTACTTCAAAACTGTCAAGGACTTCAAAGAGGAGTGCCGGAAGAATGAAATGCTGCTATCCAAGCTGAGAACTAAGGGTGCTTCGTAACTCAAATAATCTCTTATTGTTTATAAAAACTCATCTCAAAACAAATCTCAAATCTCATCAGTCAATGACTTTGTCTTGCTGTCAGAATTATGTATTCTCTTATTGGAGGTCATCATTGTTTTGTCTTATTCTGCCTATTGTATTGTGCTTTGAGATTCCATGTTTATTTGCAGCATGTAGTTAGGGATGTCACTCGTGGCAGGGCAGAGGGATTCTTGAGAGAAGGACATTAACTGCCCTGTGCACTGTGACGTGAGGAATGTTCGCTCTACTTATGTGCAATTGGCTCTAACGTGCAGGGCTATCTGTACAGTTGTATTCATTAGCTTTCTCAGATGTTGATTAGAGTGTAACAGTGCAGAATGAGGCATGGTTGACACTGTTACTAAACTACAGCATTTCAAATTAATAAATGCTATGCAGAAATATGGTTCACGTTTATGCTGACAATTTTTttcaatcaaaatcaaatgttttaCCCGTGTCTTATTCTCTGTCTATCGTTTCCAACAGTTTACTATCAAGTTGGCACTTAATAAAATAAACTATGCACAGTCA

Function

symbol description
ccdc93 Predicted to be involved in Golgi to plasma membrane transport. Predicted to be located in early endosome. Orthologous to human CCDC93 (coiled-coil domain containing 93).

NR:

description
coiled-coil domain-containing protein 93 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579428.2 False 2704 mRNA 0.46 23 28028462 28036764
XM_036959039.1 False 2701 mRNA 0.46 23 28028462 28036764
XM_036959040.1 True 2683 mRNA 0.46 22 28028462 28036764

Neighbor

gene id symbol gene type direction distance location
LOC110501690 LOC106582058 coding upstream 93146 27930952 ~ 27935316 (+)
LOC110501688 LOC106582045 coding upstream 145562 27880850 ~ 27882900 (+)
LOC110502120 sctr coding upstream 200868 27799755 ~ 27827594 (+)
trnaa-ugc-173 NA coding upstream 283101 27745286 ~ 27745361 (+)
LOC110501682 LOC106582074 coding upstream 332077 27688732 ~ 27696385 (+)
LOC110501693 LOC106582057 coding downstream 153 28036917 ~ 28052019 (+)
LOC110501694 LOC106582055 coding downstream 35656 28072420 ~ 28076571 (+)
LOC110502084 NA coding downstream 199456 28236220 ~ 28400108 (+)
trnaa-ugc-174 NA coding downstream 253461 28290225 ~ 28290297 (+)
LOC110501697 LOC106582162 coding downstream 665103 28701867 ~ 28702664 (+)
G1795484 NA non-coding upstream 39991 27987418 ~ 27988471 (+)
G1795476 NA non-coding upstream 48086 27980131 ~ 27980376 (+)
G1795411 NA non-coding upstream 115587 27898367 ~ 27912875 (+)
G1795358 NA non-coding upstream 193156 27834522 ~ 27835306 (+)
G1795519 NA non-coding downstream 6585 28043349 ~ 28043675 (+)
G1795544 NA non-coding downstream 50618 28087382 ~ 28087586 (+)
G1795546 NA non-coding downstream 51415 28088179 ~ 28088401 (+)
G1795549 NA non-coding downstream 54258 28091022 ~ 28091293 (+)
G1795949 NA non-coding downstream 111460 28148224 ~ 28156995 (+)
G1793717 NA other upstream 1712219 26315826 ~ 26316243 (+)
G1793045 NA other upstream 2296708 25731326 ~ 25731754 (+)
G1792649 NA other upstream 2731905 25294546 ~ 25296557 (+)
LOC110501609 fam155a other upstream 3014807 24848514 ~ 25013655 (+)
G1795550 NA other downstream 54801 28091565 ~ 28092116 (+)
LOC110502085 LOC106582160 other downstream 941126 28977890 ~ 28984226 (+)
LOC110501700 LOC106582186 other downstream 971860 28997763 ~ 29010281 (+)
G1797582 NA other downstream 1707428 29744192 ~ 29744854 (+)

Expression


Co-expression Network