LOC110501693 (LOC106582057)


Basic Information

Item Value
gene id LOC110501693
gene name LOC106582057
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28036917 ~ 28052019 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579430.2
GATAGGCGCAAGGTGAACAAGCCAGTATGGCGGAGGAGGAAAGTGATTTGGAAACAGACAGACTAGAATTGAAACTGGAGACTTTGTACATATACTCTAACGACAACTGTTCAGTACAAAGCAAAGAATATTGCTCCGAGTTTTGTAAGCTGGTGGAGGAGCATACAGAGAGATGGCAGGTGCCGCTGCCCCAGCTGAAGGTGCTGCGGACAGCTCTTACCTGCTTCACCAGAGCCACTGCTGCCTACCCCGATGACTGTCAGCATGTCAGTTACGCTCTCAGCAGTCTGGCCTTGAGCTTCTTTGAGCTGATGCTGTTCTTCGGTAAAGAGGAGTGCCAGGAGGCCCCCTTGAAGGACATACTAGCCTCTTTTCAGGCCTGCCACCGCCGCCTGCTGAGACACAGGAACGTCTACCTGCTACAAGTGAGGCAGGTGATCAAAGATGGCGGCCCCTGGGAGAGACCCACTCTGCAGGCCATCCTGAAAGACACAGTCCTCACACAGACAGAAGTGGAGAAGTATCTGAGCTCGGAGAAGCCAGTGTTCTTTGAGCTGCGTGTGCGATACCTGCAGGCCTGTGAGCGCGTGCAGGAGGCCATGGCCCTGGCTAAGAGTTGTCTGGAGCACCCAGAGGTGGGGAGGCACCTGTTCTTCCACCAGGCCTACCTCACCTGCCTGTACAAGGCCTCACTGCATGAACACCTGCTCAAGGAGGTGGCTGAGATAGATGGCAGAGACGCAGTAGAGATAATCTGTAACGCAGAGAGCCAGGAGAAAGAAGAGCTGCTGCTCTCTCTTTGCAAAGCCTTCCTCAGTCAACAGCTCAACAACGGAGACATGTACTACATCTGGGATCTGGTGTTCCTGTGGAGCAGACTGCACCTCAGGGCCCATCCCACTAAGCAGGGCTTCCTGTCTGAGTGTCACCAGCTGATGCTCTCCGCCATCAACGCCAGAGCCATCTTCCCCTTCATCAAAGTCATCACAGCAGAGATGGGTAGTGAGGGAGTGCCGCTATGTGTGGAGCTGTGTACTGCAGCATTGCAGACAGACCTCCAGTCTGACCCTGTGACTCGCAGCCTGTTGTGTAAGACCATCGCCTTCCTGCTCCCCCGCGACCTGGAGGTGTGCCGCCTCTGTGCCCTGCTGGTGTTCTGTCTGGAGCGCAGTGTGGAGGCCTACAAGACCGTGTATCTGCTCTACACACATCCAGACGAGGAGCCACACCCCCTCCACACTCCTGTCAAAACCAACATACGCTTCTATATCTTACAGGTGCTGAAGGAAGGGCTGTTCTTCGACCCAGAGTTCTGGAACCTCCTGACCCTGAGAACCCACTGTTTGGAGCTTATGACTGACAAAGCCATGAGGGAGGCTCTCAATgaggtgaaggaggaagaggatTTGGAGCAGGTAGAGGAGGAGTGGATACCAAGTTACTGGATGGAGGAGGAGACATGcaggatacacacagacacctccCACCTCCAACCACACACTAACACAGCACTGGAGAACTCTGAGACTGCAGGGCAGGAGCATGAGGAGGGAGAGTATGGGGATCCTCCTGAGTCACAGACAGATGACTTCCTagtgaggaggaagagaaggtgtAGGTCTGATGTTGACTATGCTGATGACCCAGACATTAAGTACTCCCTCAGACACAATCCCAGTTCTGGAAGCTCCACCAAGCTACCGGCCAATCGGCAGAGGGAATACCTGGCCAGACACGTGAAGAACAAGATCATGAAGAGACGCGGCAGGAAACCAAGATGGCTGCTCctggagatgaccagacagacagagaatgtGTCCCCGGGGAGAAAAAGGgcgagagggaagggaagggagggtaaAAGAGAGAAATGGGAAAGAGGAGAATGTAAGagtgagagatgggagaggggaaaggggagaaGAAAGCGAGGCGAAGGGGATGAGGGTAAAAAAGCGAGGAGGCAGGGAAGGGAAGGTAAGAGACCTTACCCCAGGACTATACGTGGCATGGAGCTGTCCTTCCCTGAAAATGAAGTGCCTGTGGATCAGGAGGTGGTACAGAATTGTGTAGAACCCAGTAATAGTGTTGCACTGCAGCACAGTGACGCAGAGAACTATGTCAACATGGGACTGCCTAATGGCCTACATGGTGAGAGACCGTTTGAGTATGAaccagagacagaaatagagcttTCAGAAGTAGAGCCTTCAGACATAAATCCTTTAGACTTAAAACCTTCAGTAGTAGAGCTTTCTGTTGTAGAGCCTTCTGTTGCTGAGCCTTCAGAAGTGAAGGTTTTCGAAGGTCCCAGTGAGCAGACCGACCCAGAGCTGGACGGCCCAGCTTTGGACATGGAGGAGTGTCCACTAACACTGTTCCACATCTATGCCAAATCCTCTAAAGGGACAGATGCTAAGGAATTACAACCTTTGACGGAAGGTAGTGATGTCACAGCGTTGGAGGCGGGACCGGACTCAAACACTCAGGGTGAAGACACAAAGCCAGGCAAGGCTCCTGTCCGCTCCAAACACCTGCGCTTCCACTGCAACCACTGCCAAAAGCTCTTCAAGGGAGGCAACGTGGTGAGACACACCCTGGCCCACCTGAAGCTGAGGAAGACCAGGCTCAGCTGCGTCTTCTGTGGCAAACACTTCCAACGGTACAACCGTGCCAAGGAACACGTTCTAGAGCACGTAGAGGAACTGAGAACCACCACGCTCAATAGTAAGATCAAACCTGCTGTCAATGGAGATGCAAAACTGTCGGAGAACGTTAATCAAGCTTCGGAGAACGAGACTAAGCCCACTGAGAATGTGACAGAGCCCCCTGCTCCGATGGATCAGCCTCCCAAACCCAAACGTGTTAAAGCCAAGCCAGTGGTCAGCAAGCAGAGTAGAATCATTCAGAACCTGAGAAACCTGATCAGAAAGACCCAGAAGTGGAAAACGAACACGGACAACCAGGTGTCAGTGGAAGTGAAGGATGAACAGGTGACTGTGAAGGATAAGGTGGTGATTGTGAAAGAGGTGGTGCCTGGggaggagactgagggaggagagaagaatgagtgtgaaggagaagaggaggggaagcaGAAGCAGTACCACCTGTGTCCTGCGGAGGGCTGTGACAGCATCTTTATGAAGATAGGCCCATCGCTGCTGAGACACGCAGTCAACTACCACATGGAGGACGCAGCTGTCCTGGAGAAGACCTTCCAGTGGGGGAAGGGGAAGTGCCAGATCTGCCAGAGGCACCTGCTGGTGTTCGAGCACTACAGAGACCACATGAAGCTCCATGATGCTCCTCTGAAACAGGCGTGCCTCCACATGAGCTGTGGCCAGTGCTTCAAGACCTCCCAGGAGCTCAAAGACCACATGGACACCCACCGGCCACTCCGCGCCCCCTGTGGGTACTCCGGCTGTAGGGAAATCTtctttaccctcccctctctccacggcCACGAGTGGAGACACTACACCCAGCCCCAGTCTAAAGATGAGCTGGAGCAGGGCGCTACCAAAGAGCTGAGCCCTAAGGGCGAGGCCTCCTGGAAACAGAGGGTGAAGAGCCATAATGTGACAGTGCACGGGTGGAAGGAAACGCCTATTCCCAAATCCAGGCGCTCTGATCCTCACATGAAGTGCATTTACTGTAACAGGTACCTGTGGAACTACCAGCACTTCCTAGACCACATGAAGATCCATGATGATCCTCTAAAACAGGTGTGTCTCCATCAGAACTGTGGCCAACGCTTTTCCAGAACCCACCTGCTCTGGGAGCACATGGAGACCCACCGGCCTCTCCAGGCCCTCTGTGGGTACTCCGGCTGTAGGCTGATCTTCTCacgcctcccctctctccatgacCACGAGTGGAGGCACTACACTCAGGGCCAGCCTAAAGATGAGCCGACAGAGGAGCAGAGCGCTACCAAAGAGGGGCAGACTCTGGAATCAAACCTCAACAGTAAAAACAATGACGGCCCTGTGGCGACTCCAGGCACTGGTGCTGTCACCAGACCTCCCAGTGACTGCACACACAAACTAATCAACGGCCATGATGGAGAGGACCAGAAAGACCAAGCACCTGAGACATATGTCCCTGCCACCAATACCACCTTCCCCACACAACCCCATCCCAGTCTCGTCCAAAACCTCACTGAGTCAACGACCATGAGGGATGTGGACAATATCGTCACTTTGGCTCAGGTGATGCCTTGCGGAGGGGAACCAGTTATTGCGGAACATAAGACCTTCAAACCAGAGGATCCTTCCTACTTACCCCTGGCCAAAGCCCCCCTCATCCGCCCGCCCCCCTCTACATACCTGACCGAGGCAGCCCTCAGCATGCGCAAGCGCAGGAAACCCAACGAGGTCACTTCCTGTGGGGCTGGCAAGAAGAATAAGGCTACAGTAAAGAGGCACGTGGTGGGGAGGAAGAATGCGTTGCAGGAGGTGGTGGCTgagaaggaggtagaggatgATGGCCCCCCTCAAAGACAGCGCTGCTCCAAGTGTTTCTCCTCTTTCCCTAGTCCAGAGGAACTGAAGAGACACCTCTCCCAAAACACCTGCTCCTCCCTCTTCAACTTTGACTCTGATGATGACAGTTAGTGGTAAAGAGGAATGGGAGTGAAATGATGTTCAGAAAAATGTTTTGTTGGTGTTCGAGCACTACAGAGACCACACGACACTCCAGGATGCTCCTCTCAGAAAACAGGTGGAGACTTGTCTATCTGTACTCTCTGAACTGGGCCTAACACAGGCACTGTTAGCACCCAGTCGGCTCTGAGAGCTGTAGGGCCAGTGTCATGGCACACTATAATACTGGTCACTAaaaatacaacacaactctggagtAAGTGTTATTACCACAATACACTGTACATAGGTCTAGACCGAACAGTATTGCATTTCAGTCATTGACAcgactttgtttcaacaagtcttATTTGCTTTAAAATCATAGTATGACGAATCACTCTAGGTTACTAATAGTGTTTCAAAAGTACTTCTAATTATGTtctgtttggcatacatttttgttcagtgttttaaGACTTTTTCTAATGACAAAAGAGATGGTTTCACAATGTATTAGAAATTGGTAATCTATGCATTTGATGAGAAATATTTTGTAAAAGAGCATCAAAATGAATTTGAGAATAAAAATCACTGAAGAACCCATAATGTGATAAACGATGTGCACTTACCTGCATTCGTCGTTTATTTATATGTACGAATGTTGATATATTTATTAGGTTTGTACTTAATGTAAATATCCTTCTCAATTCAACTCTATTTTTCTTAAAGAAAAATGTATGACTTGTTTTCAATAAACAATTTACAGTATGAACCAAA
>TU2054839
GGTGAACAAGCCAGTATGGCGGAGGAGGAAAGTGATTTGGAAACAGACAGACTAGAATTGAAACTGGAGACTTTGTACATATACTCTAACGACAACTGTTCAGTACAAAGCAAAGAATATTGCTCCGAGTTTTGTAAGCTGGTGGAGGAGCATACAGAGAGATGGCAGGTGCCGCTGCCCCAGCTGAAGGTGCTGCGGACAGCTCTTACCTGCTTCACCAGAGCCACTGCTGCCTACCCCGATGACTGTCAGCATGTCAGTTACGCTCTCAGCAGT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106582057

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579430.2 False 5366 mRNA 0.51 13 28036917 28052019
TU2054839 True 276 TUCP 0.50 2 28036928 28038078

Neighbor

gene id symbol gene type direction distance location
ccdc93 ccdc93 coding upstream 153 28028462 ~ 28036764 (+)
LOC110501690 LOC106582058 coding upstream 101601 27930952 ~ 27935316 (+)
LOC110501688 LOC106582045 coding upstream 154017 27880850 ~ 27882900 (+)
LOC110502120 sctr coding upstream 209323 27799755 ~ 27827594 (+)
trnaa-ugc-173 NA coding upstream 291556 27745286 ~ 27745361 (+)
LOC110501694 LOC106582055 coding downstream 20401 28072420 ~ 28076571 (+)
LOC110502084 NA coding downstream 184201 28236220 ~ 28400108 (+)
trnaa-ugc-174 NA coding downstream 238206 28290225 ~ 28290297 (+)
LOC110501697 LOC106582162 coding downstream 649848 28701867 ~ 28702664 (+)
epha6 LOC106582188 coding downstream 703771 28755790 ~ 28976739 (+)
G1795484 NA non-coding upstream 48446 27987418 ~ 27988471 (+)
G1795476 NA non-coding upstream 56541 27980131 ~ 27980376 (+)
G1795411 NA non-coding upstream 124042 27898367 ~ 27912875 (+)
G1795358 NA non-coding upstream 201611 27834522 ~ 27835306 (+)
G1795544 NA non-coding downstream 35363 28087382 ~ 28087586 (+)
G1795546 NA non-coding downstream 36160 28088179 ~ 28088401 (+)
G1795549 NA non-coding downstream 39003 28091022 ~ 28091293 (+)
G1795949 NA non-coding downstream 96205 28148224 ~ 28156995 (+)
G1795967 NA non-coding downstream 136210 28188229 ~ 28188523 (+)
G1793717 NA other upstream 1720674 26315826 ~ 26316243 (+)
G1793045 NA other upstream 2305163 25731326 ~ 25731754 (+)
G1792649 NA other upstream 2740360 25294546 ~ 25296557 (+)
LOC110501609 fam155a other upstream 3023262 24848514 ~ 25013655 (+)
G1795550 NA other downstream 39546 28091565 ~ 28092116 (+)
LOC110502085 LOC106582160 other downstream 925871 28977890 ~ 28984226 (+)
LOC110501700 LOC106582186 other downstream 956605 28997763 ~ 29010281 (+)
G1797582 NA other downstream 1692173 29744192 ~ 29744854 (+)
LOC118943632 LOC100194703 other downstream 1871538 29917773 ~ 29933035 (+)
G1795519 NA non-coding downstream 5271 28043349 ~ 28043675 (+)

Expression


Co-expression Network