LOC110501694 (LOC106582055)


Basic Information

Item Value
gene id LOC110501694
gene name LOC106582055
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28072420 ~ 28076571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579432.2
TCGGGAAATGAAACCGAAAGTTCCTAGATATGATCTGCTGAAACGGAATTGGTTAGATCGGCATATATTGCTGGCATAATCTGTCAGGAAGTTGCTATAACAAGTTTCAGCACCTATTTCTGATTTTAAATTAGCTCTTTAATTCTGAAGATGTCAAGATTGAATTACAAGGAGCGTTATGGTTGCCGACGGCTGTTAGAGATGATGACAAATGATGACATATCCTCACTTCGATTTACTATCACTAACAAAAAGAAGGGTCTTTTCGAGAGCACATCAGAGAATGCAGAGGCATTCCTGAAACGCAGGAAAGTTCAACGTGACTTCATACTCAAATACCTGACGGAGGACGAGGGGGTTGTGATACCCAAAAACAGCAACAAAGACCAGCTAGTGAAGAAGGCCCTTGACGTCTGGACTATTGAGAAGGTGTGTCCACAAGCGTATGAAGAtgtctccttcagtgctttaacAAGAGCAGCAGATTCTCAGAAAGGAATGAGGTTTCCAACAGCACATGTCCCCCCTCAACCTGTCTACTCTAAGCCGCACTACACATCCCAGATGTTGGACCTTCAAAGCCCAGCAGCTGAGACCAATCCAGGACCAGCTGTGACTATTGTGAGACAAATTGAGACTAGTTTGAGACCAATTGGTCTGAGAACAAGTGAGAGTGTCTCTGTTTTCTCTGAGGCGACATACAGTGCTGGCTTTGACCACCTGGCCTTGGCCAGACAGTTTTGTCAGTGGTTCTTCCAGCTTCTCAACAGTCTGAACCCCTCCTTGGGTCAGCCTCCTCAGGAGTGGGGACCACAACACTTCTGGGAGGATGTGAGGCTACGTCTTCTCTCCAGCGCCGGAGAGCAGTATACAGAAGAGTACGAAGGAGCAGCAATGACCAGCCTGCGTCTCCTGGCCCTGGCGAGGGACGAGAGGCTGCTATTGAGCCCCAACCTGGATCCTGGTGGCCTGAAGGCCCTGCCCTCCCCCCACGGCCTGGTGCTGGTGGCTGTGGCAGGGaccatccacagagacagagaatgtgtCGGCATTTATGAGCAGGCGTTTGGCCTCATACGCTCCCCACTGGACCAGAACAAATGGAAGATCAAGTTCATGGTCTTGAAGGTGAGGGGCCAGGAGGCTCTCAGGGTGGGAGAGAACCTGCTGTCTCCAATATTAACATGGGATTCCAATGACCTGCAGCTCCTCTGTAGATGATGGGGGACCTGGTGTGATCGTCAGCAGGGGTCTTCAACCGAGGGTCCGCAGGTCTGGATCCTAACTATGGAGACATTTTAAATATGATTTATAAAATGGTACAGTACATGAATTATCATGTAATGCTTCATAAGTTGCCTACTTCTAGGTTTACTCATTGTCAGAAAAGGACTATTTAACTGTTCTCTAGTTTGGTACATTTTCCCCCCCAGCTAATAAATCATTATACTGTAATTGACCTCAGTAACCTCTGATCTATTTGTTCTAATTATTTGTAGcctttatttaggaatgtagtcatTGAGACCAAAATCTATTTTTTTTCAAGGGAGTCCTGCATAGATACACCTTTTACATTATATCTACGAAGTCCAAAAGCTGTGAAAACAAGGCCACCACTAACTTTTTAATTTGTGTTCTTTCACCCTCAATCTCTCTCCGTCGCGctgtcctctctcactctgtgtgagAGTGTAGCCCATAGGCCTGGCTCTGTGTGAGAGTGTAGCCCATAGGCCTGGCTCTGTGTGAGAGTGTAGCCCATAGGCCTGGCTCTGTGTGAGAGTGTAGCCCATAGGCCTGGCTCTGTGTGGGAGTGTAGCCCATAGGCCTGGCTCTGTGTGAGAGTGTAGCCCATAGGCCTGGCTCTGTGTGGGAGTGTAGCCCATAGGCCTGGCTCTGTGTGAGAGTGTAGCCCATAGGCCTGGCTCTGTGTGGGAGTGTAGCCCATAGGCCTGGCTCTGTGTGAGAGTGTAGCCCATAGGCCTGGCTCTGTGTGGGAGTGTAGCCCATAGGCCTGGCTCTGTGTGAGAGTGTAGCCCATAGGCCTGGCTCTGTGTGGGAGTGTAGCCCATAGGCCTGGCTCTGTGTGAGAGTGTAGCCCATAGGCCTGGCTCTGTGTGGGAGTGTAGCCCATAGGCCTGACTCTGTGTGAGAGTGtagcacctctgattcagaggggttgagttaaatgctgaagacacatttcagttgaatacattcagttggacaactgactaggttgccCTTCCCcaccagaacccaaaatataatcttattttactccaatgtttataAACACAAACAAATACTCTATAGCCTCAACGTGGTTAACAACTATAATGTTGATGTCATGGGTGGTCAgtctttgcatccatagctctctatgaatttgagagtgggtTTGAGGACCTTTTTACTGATGATTATGTTTTGCTTTTCATGTATTGACGTGTATATTGATGTCTATTATTGATGTGCatagtgtgtgttgatgtgtatgcagggctcatctgtaaaatagACCTTGTTCTCAGCATGACTTCTTGTCGAAATAAAGGTTGAATCAAAACAA
>XM_021579431.2
CGGGAAATGAAACCGAAAGTTCCTAGATATGATCTGCTGAAACGGAATTGGTTAGATCGGCATATATTGCTGGCATAATCTGTCAGGAAGTTGCTATAACAAGTTTCAGCACCTATTTCTGATTTTAAATTAGCTCTTTAATTCTGAAGATGTCAAGATTGAATTACAAGGAGCGTTATGGTTGCCGACGGCTGTTAGAGATGATGACAAATGATGACATATCCTCACTTCGATTTACTATCACTAACAAAAAGAAGGGTCTTTTCGAGAGCACATCAGCATCAATTGATGCCATCCTTTCAAACACAGAGAATGCAGAGGCATTCCTGAAACGCAGGAAAGTTCAACGTGACTTCATACTCAAATACCTGACGGAGGACGAGGGGGTTGTGATACCCAAAAACAGCAACAAAGACCAGCTAGTGAAGAAGGCCCTTGACGTCTGGACTATTGAGAAGGTGTGTCCACAAGCGTATGAAGAtgtctccttcagtgctttaacAAGAGCAGCAGATTCTCAGAAAGGAATGAGGTTTCCAACAGCACATGTCCCCCCTCAACCTGTCTACTCTAAGCCGCACTACACATCCCAGATGTTGGACCTTCAAAGCCCAGCAGCTGAGACCAATCCAGGACCAGCTGTGACTATTGTGAGACAAATTGAGACTAGTTTGAGACCAATTGGTCTGAGAACAAGTGAGAGTGTCTCTGTTTTCTCTGAGGCGACATACAGTGCTGGCTTTGACCACCTGGCCTTGGCCAGACAGTTTTGTCAGTGGTTCTTCCAGCTTCTCAACAGTCTGAACCCCTCCTTGGGTCAGCCTCCTCAGGAGTGGGGACCACAACACTTCTGGGAGGATGTGAGGCTACGTCTTCTCTCCAGCGCCGGAGAGCAGTATACAGAAGAGTACGAAGGAGCAGCAATGACCAGCCTGCGTCTCCTGGCCCTGGCGAGGGACGAGAGGCTGCTATTGAGCCCCAACCTGGATCCTGGTGGCCTGAAGGCCCTGCCCTCCCCCCACGGCCTGGTGCTGGTGGCTGTGGCAGGGaccatccacagagacagagaatgtgtCGGCATTTATGAGCAGGCGTTTGGCCTCATACGCTCCCCACTGGACCAGAACAAATGGAAGATCAAGTTCATGGTCTTGAAGGTGAGGGGCCAGGAGGCTCTCAGGGTGGGAGAGAACCTGCTGTCTCCAATATTAACATGGGATTCCAATGACCTGCAGCTCCTCTGTAGATGATGGGGGACCTGGTGTGATCGTCAGCAGGGGTCTTCAACCGAGGGTCCGCAGGTCTGGATCCTAACTATGGAGACATTTTAAATATGATTTATAAAATGGTACAGTACATGAATTATCATGTAATGCTTCATAAGTTGCCTACTTCTAGGTTTACTCATTGTCAGAAAAGGACTATTTAACTGTTCTCTAGTTTGGTACATTTTCCCCCCCAGCTAATAAATCATTATACTGTAATTGACCTCAGTAACCTCTGATCTATTTGTTCTAATTATTTGTAGcctttatttaggaatgtagtcatTGAGACCAAAATCTATTTTTTTTCAAGGGAGTCCTGCATAGATACACCTTTTACATTATATCTACGAAGTCCAAAAGCTGTGAAAACAAGGCCACCACTAACTTTTTAATTTGTGTTCTTTCACCCTCAATCTCTCTCCGTCGCGctgtcctctctcactctgtgtgagAGTGTAGCCCATAGGCCTGGCTCTGTGTGAGAGTGTAGCCCATAGGCCTGGCTCTGTGTGAGAGTGTAGCCCATAGGCCTGGCTCTGTGTGAGAGTGTAGCCCATAGGCCTGGCTCTGTGTGGGAGTGTAGCCCATAGGCCTGGCTCTGTGTGAGAGTGTAGCCCATAGGCCTGGCTCTGTGTGGGAGTGTAGCCCATAGGCCTGGCTCTGTGTGAGAGTGTAGCCCATAGGCCTGGCTCTGTGTGGGAGTGTAGCCCATAGGCCTGGCTCTGTGTGAGAGTGTAGCCCATAGGCCTGGCTCTGTGTGGGAGTGTAGCCCATAGGCCTGGCTCTGTGTGAGAGTGTAGCCCATAGGCCTGGCTCTGTGTGGGAGTGTAGCCCATAGGCCTGGCTCTGTGTGAGAGTGTAGCCCATAGGCCTGGCTCTGTGTGGGAGTGTAGCCCATAGGCCTGACTCTGTGTGAGAGTGtagcacctctgattcagaggggttgagttaaatgctgaagacacatttcagttgaatacattcagttggacaactgactaggttgccCTTCCCcaccagaacccaaaatataatcttattttactccaatgtttataAACACAAACAAATACTCTATAGCCTCAACGTGGTTAACAACTATAATGTTGATGTCATGGGTGGTCAgtctttgcatccatagctctctatgaatttgagagtgggtTTGAGGACCTTTTTACTGATGATTATGTTTTGCTTTTCATGTATTGACGTGTATATTGATGTCTATTATTGATGTGCatagtgtgtgttgatgtgtatgcagggctcatctgtaaaatagACCTTGTTCTCAGCATGACTTCTTGTCGAAATAAAGGTTGAATCAAAACAA

Function

NR:

description
uncharacterized protein C3orf38 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579432.2 False 2575 mRNA 0.47 4 28072420 28076571
XM_021579431.2 True 2604 mRNA 0.47 4 28072421 28076571

Neighbor

gene id symbol gene type direction distance location
LOC110501693 LOC106582057 coding upstream 20401 28036917 ~ 28052019 (+)
ccdc93 ccdc93 coding upstream 35656 28028462 ~ 28036764 (+)
LOC110501690 LOC106582058 coding upstream 137104 27930952 ~ 27935316 (+)
LOC110501688 LOC106582045 coding upstream 189520 27880850 ~ 27882900 (+)
LOC110502120 sctr coding upstream 244826 27799755 ~ 27827594 (+)
LOC110502084 NA coding downstream 159649 28236220 ~ 28400108 (+)
trnaa-ugc-174 NA coding downstream 213654 28290225 ~ 28290297 (+)
LOC110501697 LOC106582162 coding downstream 625296 28701867 ~ 28702664 (+)
epha6 LOC106582188 coding downstream 679219 28755790 ~ 28976739 (+)
LOC110502085 LOC106582160 coding downstream 903647 28977890 ~ 28984226 (+)
G1795519 NA non-coding upstream 28745 28043349 ~ 28043675 (+)
G1795484 NA non-coding upstream 83949 27987418 ~ 27988471 (+)
G1795476 NA non-coding upstream 92044 27980131 ~ 27980376 (+)
G1795411 NA non-coding upstream 159545 27898367 ~ 27912875 (+)
G1795358 NA non-coding upstream 237114 27834522 ~ 27835306 (+)
G1795544 NA non-coding downstream 10811 28087382 ~ 28087586 (+)
G1795546 NA non-coding downstream 11608 28088179 ~ 28088401 (+)
G1795549 NA non-coding downstream 14451 28091022 ~ 28091293 (+)
G1795949 NA non-coding downstream 71653 28148224 ~ 28156995 (+)
G1795967 NA non-coding downstream 111658 28188229 ~ 28188523 (+)
G1793717 NA other upstream 1756177 26315826 ~ 26316243 (+)
G1793045 NA other upstream 2340666 25731326 ~ 25731754 (+)
G1792649 NA other upstream 2775863 25294546 ~ 25296557 (+)
G1795550 NA other downstream 14994 28091565 ~ 28092116 (+)
LOC110501700 LOC106582186 other downstream 932053 28997763 ~ 29010281 (+)
G1797582 NA other downstream 1667621 29744192 ~ 29744854 (+)
LOC118943632 LOC100194703 other downstream 1846986 29917773 ~ 29933035 (+)

Expression


Co-expression Network