LOC110501696 (LOC106582163)


Basic Information

Item Value
gene id LOC110501696
gene name LOC106582163
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28538705 ~ 28548565 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959043.1
acagttttagaaacttctgagtgttttctatccaatactaataataatatgcatattgtGAAGCTGAGTAGGCGGCAGTtaactctgggcacgctattcgtccaaagtgaaaatgctgccccctatcccaaatacGTTTTTTAAACATAGTGGCGGGTCAATTTTGACCCTAAAGACAACACAAAGGTTAAAATAACAAAGACAATAAAtgtttttgtcaagttccttaaatgtgctgtgAATGTTCCTAAGTCAAGCAAGTATCCTGCACCAATCCCAGAATGTTGTGGGAAGGCTGTATGCTAAATAAGCATAGGATAACCATGCTCTCACAAAGCCCTAAGAAACATAGTTcccagaacgttatgtgctagctgggggtACTCCAAACTATCCAGACACTGCATTAGAAATTAGGAAATGCGGTATATATACGCTTCAGAATAAACTTATGAAGCCTACAAACTGTTATAATAATCAACATGTTCTGCtgtctagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaaaaggtCACTTCTCTGAGCGCTCTCATTATATCGTTATGTCAGGGAGATGTACTAGTGAAGGGAAATGGCTTGCAgcaaaaacataaacaagagaACTTCTCATGGGAAGAAAAGCTGAAGTAGATTCACTGGTGCTGCAGATAAACGTTGtgctcatccatctctccctgccATCCTAAGCCACAAACACTACTTGTAGCTTAGTGGACCAAAGGGCTTAAGGAATTTCTCAGGAATGTTCTTGTCTATGCATTATTAACTATAGAAGAGCTTCTCAGCTAGTACATAACATTCTGACAAAATACTTTATTTATTGGTATTTCATTACATTAACAGAAAGTTTCCTAAAAATTCAAACATTGTTACATTTAATAACAATTTTGGGAACGCTCTCAggctggtttgacattgggaatgttctcaaatagttcagagaacattAGGAAACAGTGTTCTTCTATGGGAATTTCAGCATTTCAGCATAAcctttcctacaggtttcctcttGGTTCTATCAACTTGTTCCAAGAACATTAATAAACCTTCCATCAAAACCACAATAAAACTTTAGTAACTTTCAGATAACATTCTAACATGTAGGCCAATTTTCTATTCTCAGCATCagcaaaactctctctatcctcgaTCCTGTTAAGTATGTTCAGGGGAGTTGGGCGCGCCCACTAGTTTGCCACACCTGACCTTAATAAGtgtttgtttcctttgaaatggggtctgtttgaatagactaaaacgAACAGCTTTGTATGCTTAAAAAAACATGGTATgatagctccatcctggtggcatAGGAGACGTATTCCATGGATAAAAACAGAAGGTTAAAAACATGGTATgatagctccatcctggtggcatAGGAGACTTATTCCATGGATAAAAACAGAAGGTTAAAAACATGGTATgatagctccatcctggtggcatAGTAGACTTATTCCATGGATAAAAACAGAAGGTTAAAAACATGGTATgatagctccatcctggtggcatAGGAGACTTATTCCATGGATAAAAACAGAAGGTTAAAGGTTGGAATCTCACTGATGCTGTGTCTTGtcacaaaaaaaactaaatgttTGCGTGATAAATGGCTAAGGAAAtacatttccatgtgtcctatctgtgcttcaATAAAGTTAACCCCAAATAAGCTAACAGTGGTTTTgaaagttttaaggaagttatAAAAAAATGTCTAAATAACCTCAGGGCATTAATAAAACctaagacgttctcagaacctccctgcaacctaaaaataagCATTCCCTGTGGATGCAACATTTTCACTTCTTTTCTCATAATGTTTAAAAAACGTTACATTTTACTGTTCAGGAAACTTATGGATTtgttcccacaaccaatgtgaaaccaaaaacatacgttcccacaacttccaagaaACCAAATGTGTTAGCGGGGTTGCGATGCTATAAACAAACAAAGTGAAGATAGACGCGATTCCAATTCAAAGTGGACACACCAATGTAAATATTTACCTCATACAATCTTGAGTTCCTCATTGTAATGATGATTAATTGGGATGAACAAGAAAGGAAAGGTCACCTGGTAAAAAGTGTTGACTGAAACGGCTTTGTTCAAAACAGTGTTTTGGTCTTCTCTTTAGGCATACCcataaacagtgcattcggaaagtattcagaccccttgactttttccatattttgctacgttacagccttgttctaaaatgtttaGGCTCTGTTCTGTGGTGCTAACTTTACCAAAAGGCCTCAACTGACAGGTTCTGCTATCCTCCTGAGGGAACTCCACTCTGACCATGAGGGACCGTCTGGAGGAGCTGCGTCAGAGGGCCCAGGAGTTCCGGGAGGCAAGAAACAAGGCAGATGAAACCCCATTCCCTGAGGAAGACGCTGACCCAGATGACCCAGTGTGGGTTAGTGTCGCCACCCCGCAGCAGGCTGTGGTGTTTGAGGAGGAACCAGTCCTGGACAACTTCCTGTCCGAGGCTCAGCATATCCGCGGTGACATCACTGAGCTCGAAACCGAGGTGAAGAAGTTTAGCCAGCATCAAAGGAGCCTGGTGGCAGCCATGCGTCGTTTCAGTGTGATGAAGAAGGAGAGCAGTGTAACGACGGACATCAAGCTGCAGGCAGAGAGCATCCACAGACGGCTGGACGCCCTCTTCAAGAAGGCACAGAGTTTAGAAGGCCTGCAGGGACTGGCTACAGCCACTACACGCATCCAACGCTCCCAACACGCAGCGCTACACAGACAATTCCAGCAGGTAATGCGTTTGTACAACGACTCCATTCTCAATAAACAGGAGCGGTGTAAACACTTCATCATCCGTCAGCTGGAGGTGTCTGGTCGCGACGTCACCGAGGAGGAAGTGGACCAAATGGTTTCTGCGGGGAAGTGGGAGGTGTTTAACCAGAACCTCCTCCACAATGAACGCATCACACGCTCTAAGCTGTCTGAGATCGAGCAGAGACACAAGGAGCTGGTGAATCTGGAGAGCAACATGAAAGAGCTGAGAGATCTGTTCATGGATGTCTTTATTTTGGTGGAGGAGCAGGGAGACTACATAGACCACATCCAGACCAGCGTAGAGAAGACACAGGACTATGTCACCGTCAGTAACGAGAAGTTTAAAATGGCTGCCAGGTACAAGAAAAATAACCCTTTGAGGAGGctgtgctgctgttgctgccccTGGAGGTGATGCACAtagaggagagactggagactggagatGCCCCTGGAGGTTTTTcagatggggagaggaagagttCTGGAGAGTCTGCAGGTGGCATTTCACTTATAAGAATCTTCAGAGGAGaccgcgtgaatcaggccttcgtagtcgaattgctgcaaagaaaacactactaaagaacaccaatgaGAATGAGAGAcctgcttgtgccaagaaacacgagcaatggacattagaccggtagcaatctg
>XM_036959044.1
AGAGAAGTTATTCCTCTGTTATAGCAGTTTTCTGGCTAACTGTTAACATAGAGGAAAACTAACAGAACAGGCACACCTGTGTCCTACAGCTAACAGGTCTATGAAGTGGAGGGCTAAGAAGATGCCATGAGGATTATGTTCAGGAGGATGGGATAAACATGTTGTTAACTTTATGGATACTTTATGGAGAAATCCACTCTCCATGGCTTGGCTCAAGTGGTAGTTACATTCCTGGTCAAGAATAAAGGGTCGTTTCTACAACAAGGACTACTAACTACAACAAGGACTACTAACTACAACAAGGACTACTAACTACAACAAGGCCTCAACTGACAGGTTCTGCTATCCTCCTGAGGGAACTCCACTCTGACCATGAGGGACCGTCTGGAGGAGCTGCGTCAGAGGGCCCAGGAGTTCCGGGAGGCAAGAAACAAGGCAGATGAAACCCCATTCCCTGAGGAAGACGCTGACCCAGATGACCCAGTGTGGGTTAGTGTCGCCACCCCGCAGCAGGCTGTGGTGTTTGAGGAGGAACCAGTCCTGGACAACTTCCTGTCCGAGGCTCAGCATATCCGCGGTGACATCACTGAGCTCGAAACCGAGGTGAAGAAGTTTAGCCAGCATCAAAGGAGCCTGGTGGCAGCCATGCGTCGTTTCAGTGTGATGAAGAAGGAGAGCAGTGTAACGACGGACATCAAGCTGCAGGCAGAGAGCATCCACAGACGGCTGGACGCCCTCTTCAAGAAGGCACAGAGTTTAGAAGGCCTGCAGGGACTGGCTACAGCCACTACACGCATCCAACGCTCCCAACACGCAGCGCTACACAGACAATTCCAGCAGGTAATGCGTTTGTACAACGACTCCATTCTCAATAAACAGGAGCGGTGTAAACACTTCATCATCCGTCAGCTGGAGGTGTCTGGTCGCGACGTCACCGAGGAGGAAGTGGACCAAATGGTTTCTGCGGGGAAGTGGGAGGTGTTTAACCAGAACCTCCTCCACAATGAACGCATCACACGCTCTAAGCTGTCTGAGATCGAGCAGAGACACAAGGAGCTGGTGAATCTGGAGAGCAACATGAAAGAGCTGAGAGATCTGTTCATGGATGTCTTTATTTTGGTGGAGGAGCAGGGAGACTACATAGACCACATCCAGACCAGCGTAGAGAAGACACAGGACTATGTCACCGTCAGTAACGAGAAGTTTAAAATGGCTGCCAGGTACAAGAAAAATAACCCTTTGAGGAGGctgtgctgctgttgctgccccTGGAGGTGATGCACAtagaggagagactggagactggagatGCCCCTGGAGGTTTTTcagatggggagaggaagagttCTGGAGAGTCTGCAGGTGGCATTTCACTTATAAGAATCTTCAGAGGAGaccgcgtgaatcaggccttcgtagtcgaattgctgcaaagaaaacactactaaagaacaccaatgaGAATGAGAGAcctgcttgtgccaagaaacacgagcaatggacattagaccggtagcaatctg
>XM_036959045.1
AGAGAAGTTATTCCTCTGTTATAGCAGTTTTCTGGCTAACTGTTAACATAGAGGAAAACTAACAGAACAGGCACACCTGTGTCCTACAGCTAACAGGTCTATGAAGTGGAGGGCTAAGAAGATGCCATGAGGATTATGTTCAGGAGGATGGGATAAACATGTTGTTAACTTTATGGATACTTTATGGAGAAATCCACTCTCCATGGCTTGGCTCAAGTGGTAGTTACATTCCTGGTCAAGAATAAAGGGTCGTTTCTACAACAAGGACTACTAACTACAACAAGGACTACTAACTACAACAAGGACTACTAACTACAACAAGGTTCTGCTATCCTCCTGAGGGAACTCCACTCTGACCATGAGGGACCGTCTGGAGGAGCTGCGTCAGAGGGCCCAGGAGTTCCGGGAGGCAAGAAACAAGGCAGATGAAACCCCATTCCCTGAGGAAGACGCTGACCCAGATGACCCAGTGTGGGTTAGTGTCGCCACCCCGCAGCAGGCTGTGGTGTTTGAGGAGGAACCAGTCCTGGACAACTTCCTGTCCGAGGCTCAGCATATCCGCGGTGACATCACTGAGCTCGAAACCGAGGTGAAGAAGTTTAGCCAGCATCAAAGGAGCCTGGTGGCAGCCATGCGTCGTTTCAGTGTGATGAAGAAGGAGAGCAGTGTAACGACGGACATCAAGCTGCAGGCAGAGAGCATCCACAGACGGCTGGACGCCCTCTTCAAGAAGGCACAGAGTTTAGAAGGCCTGCAGGGACTGGCTACAGCCACTACACGCATCCAACGCTCCCAACACGCAGCGCTACACAGACAATTCCAGCAGGTAATGCGTTTGTACAACGACTCCATTCTCAATAAACAGGAGCGGTGTAAACACTTCATCATCCGTCAGCTGGAGGTGTCTGGTCGCGACGTCACCGAGGAGGAAGTGGACCAAATGGTTTCTGCGGGGAAGTGGGAGGTGTTTAACCAGAACCTCCTCCACAATGAACGCATCACACGCTCTAAGCTGTCTGAGATCGAGCAGAGACACAAGGAGCTGGTGAATCTGGAGAGCAACATGAAAGAGCTGAGAGATCTGTTCATGGATGTCTTTATTTTGGTGGAGGAGCAGGGAGACTACATAGACCACATCCAGACCAGCGTAGAGAAGACACAGGACTATGTCACCGTCAGTAACGAGAAGTTTAAAATGGCTGCCAGGTACAAGAAAAATAACCCTTTGAGGAGGctgtgctgctgttgctgccccTGGAGGTGATGCACAtagaggagagactggagactggagatGCCCCTGGAGGTTTTTcagatggggagaggaagagttCTGGAGAGTCTGCAGGTGGCATTTCACTTATAAGAATCTTCAGAGGAGaccgcgtgaatcaggccttcgtagtcgaattgctgcaaagaaaacactactaaagaacaccaatgaGAATGAGAGAcctgcttgtgccaagaaacacgagcaatggacattagaccggtagcaatctg

Function

NR:

description
syntaxin-19-like

GO: NA

KEGG:

id description
K08487 STX11; syntaxin 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959043.1 False 3614 mRNA 0.43 5 28538705 28542955
XM_036959044.1 False 1523 mRNA 0.50 5 28538705 28548565
XM_036959045.1 True 1509 mRNA 0.50 5 28538705 28548565

Neighbor

gene id symbol gene type direction distance location
LOC110502083 LOC101162407 coding downstream 476022 28058893 ~ 28062683 (-)
LOC110501691 LOC106582059 coding downstream 519589 28009421 ~ 28019116 (-)
LOC110501689 LOC106582060 coding downstream 625786 27903582 ~ 27912919 (-)
acbp acbp coding downstream 700132 27834422 ~ 27838573 (-)
LOC110501686 LOC106582063 coding downstream 721582 27776571 ~ 27817123 (-)
trnan-guu-200 NA coding upstream 171494 28720059 ~ 28720298 (-)
LOC110501699 NA coding upstream 270765 28819330 ~ 28826708 (-)
LOC118943585 NA coding upstream 775580 29324145 ~ 29325269 (-)
LOC110501708 LOC106582177 coding upstream 884987 29433552 ~ 29441071 (-)
dnajc15 dcj15 coding upstream 1057498 29606063 ~ 29619908 (-)
G1796297 NA non-coding downstream 1201 28537079 ~ 28537504 (-)
G1796264 NA non-coding downstream 26948 28511294 ~ 28511757 (-)
G1796239 NA non-coding downstream 86890 28434915 ~ 28451815 (-)
G1796224 NA non-coding downstream 138434 28394836 ~ 28400271 (-)
G1796176 NA non-coding downstream 290257 28248127 ~ 28248448 (-)
G1796302 NA non-coding upstream 3300 28551865 ~ 28552108 (-)
G1796328 NA non-coding upstream 16760 28565325 ~ 28584782 (-)
G1796363 NA non-coding upstream 48925 28597490 ~ 28597697 (-)
G1796376 NA non-coding upstream 57739 28606304 ~ 28607422 (-)
G1796377 NA non-coding upstream 59328 28607893 ~ 28608240 (-)
G1796204 NA other downstream 204084 28334224 ~ 28334621 (-)
G1795850 NA other downstream 557326 27980664 ~ 27981379 (-)
LOC110501685 LOC106582064 other downstream 795106 27741372 ~ 27770708 (-)
G1796401 NA other upstream 77573 28626138 ~ 28626891 (-)
G1797146 LOC106582182 other upstream 663099 29211664 ~ 29243649 (-)
G1797556 NA other upstream 1110902 29659467 ~ 29660947 (-)
LOC110501714 LOC106582170 other upstream 1289712 29835498 ~ 29846456 (-)

Expression


Co-expression Network