LOC110501699


Basic Information

Item Value
gene id LOC110501699
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28819330 ~ 28826708 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038812.1
GGAAATAAATGTATGGTGTTCATACCAGTCAGTCTGATTACTCTTAGCATTACGATTGCCATTCTAATTGTAGGTTGTTGTTTTAATGTTTGTCACAGCTTTCCTGACATTTGAGATCCCACTTACTAGTTTATCAGAGACAAAGCTGTATGATGGGTCTGGAACTGAAGTTGATGGGGATGTGTTTGAGGAGGTGGTGACACGGCCAGATTTAGGTGTTTTCAAGCTCACACTGAACAATGATGCTAAAGTTATGTGCTGGTTATCAAGTCGTGGTTATTTGTGGCATCACTTTCAATATAACCATACATTTGACATGTCTGTGTTGTTATTGTGTATTTCAGAATCTTCCCTGGTGAGTCCTGTCTCTGCCAGTTCTGTGATGGGTGGTTCAGACCATGAGTCGGATGATACAATTATTTTGAGCGAGGATGGAAGCCCCTCACGAAAGCATCAAAGATCTGATGACGAAGCAAAAAAAGGTAAGTTGGTAATTCATTCTTCAATTCTTCTTGCCACCAAATTGATTTGTCACtgctgtttttttgtgtttttttttttacatactgaAGAAAAAAACCTGGTGGAGGTTGTCATCAAGGAATACTCCAAAGCTAAAAGCCTGACTGACTGCACCAGACGAAAGATGATCAACATTCTGGTTTCGGCGATGACAGAGACTCATGGGACATCAACACCACGCAGTGTGAGAGAAACGTTTGCACAAGGCATCGTCTCCTTGTTCCCATAACCTGAAGGATCCCTACAACACAAATGGATATATTGAACATAATTTTGTGCTGCTGTTTGGAGAGGGAATATCAGCCAGGTCTTTGGAGTGGTGGCCAACTACATTCAAGCAAAATATCATCATGCTAAGCAAGACCCTAAGCAAGACCCCTGATTGAGCTGAACTTCAGGAGCTGATCCAGATGGAAGAATCTGCAGTTAATGAGGGAGCTGACACAAATGCTGACGGATGGGACGGTGACCtttcctccatccttctcctgcTCCATTTGATTCCTTCATCACAAGGCTGCAAAAGACCAGGCAAGATGTCCGCATCCCAAGCTGAACAGCATCTTGTGATATTCTAAAAGGCAGGAACCAGTATCCAGGAGCATCTTTATGCGATTGACCAGAGCCGCCAACCATATCTTCTTGCAGTCAGGACCAGGAGGAGCAGCATCCATGCTTACTTCATCATCCTGGACAAACGGGACTTGCCGTGCAAGTCAAAGAGGGCTCTTGGTGCCTTTGATGAGCTTTTCAAGACTCACTTTGTTTTTGGTACTGCAATGTTGTGCAACATGTACACCTTCATACAGACAACTGTGTACATCATAGACATTGGTGAGGTTAAGGAGACTCCAAGGGTTGCTGAGCTCAGAGCTAGACTCCTGCACTAATGCCGATTAAGTTATGATGATATGTTTTGTTTGCCAAGCTAGTCATGGAAGTACCAACTTGCTCGTGAGGCATCTCAAGTTGATGCATGGAATGTTCCCTGGTAGAACTCTTAGACTAAAATGTGGTCAAGCAGATTGTTGTGTATATGGTACATTTTCAGGCTTTAGGAAGCATTTGAACAGGGCACATTCCGGAGACTGTCAAATTTTGTTAAACGCTAAGTTGGATGCTAATACAGACAGTTGATAATCAGCCAAGAAATGCTGATTTTCCTTCAAATTCTAGTTGtaatcatgttacacaatatctAACAAGAACACACTTGATATGTGTGCATCTGCTATTGCACAACTGCTGGCTGGCTGCAAGTGTAGGTCAGACGACTTTAAATAGTTGTGTATCTTCCATGGAAGAAGCAGATACAGGGTCAAGCTAAAGTGACCGCTCGTCCTTGTATATCTTCAAAGACACAGAAACTGTCACAAATCCAACATTCTTTTCAGGATATTGAAAATCATTTCACATTGTTGGTATACATTAACTGTTTGGTTTTGTGGAATCATTTTGTGCTCGTTATTGTTGCCGTTTTTGCCTCACTGAAAAAGTAGACTTTCAAACTGTTCTTTGAGGATGACCCAAGAGTGACTTTACGAACAAAACACGCACTCAGACCATTGTCAAACTATTCAGTCAAACCCAACACTACCTCATATGTACGCTGTGAAGCATACTTGCTTATTGAACTCTGCAGTACTTCAATACTACAGACTATTTTTCTGTTGATATAATGCATGACATTTTAGAAGGAGTTGCACAATGAGGTAAAACTTGTTATAGTATTTACAAGCCAACTTTGACTGCTAAAGATGTGTACGGTAGAGTTCCTTCATATAGCTATGGCTACACAGAGAGGAGGAATCGTCCACCTGCACTCAAATTGGATCATGGGAGCAATGATTTGGGTCTAAATGCTATTCAGTCTTGGTGTCTTCGTAATTTGACATTGATATTTGGTGATCTTGTACAGAAAGATGATAAATACTGGCTaactctgttactactactattgtGTTTTCTCCTATACTAACAGAGGGCATGACCATCTATCTGAAGCACTTAATTGCTGAACATCATAGGCTTTTCAATTATTTGTTTCCTGATAGAAATCTGTTACCGAAACACCACTTCATGATACATTATCCTTGTTGTATAAGGAATATTGGGCCCATTCTTCCCTCATGGTGTAAATGTGCTACGAAGCAAAAACAATTTCTTTAAAAAGCAACTGAAGAGTTTTAAGAATGTCACTATGAACTTAGCCAAGAAACACAAATGACATGGCATATAACTGAGAAACCTTCAGCCAGGATGGACAAGCTATCAGCCAGGATGGACTAGCTATAGGTCCAGGATGGACTAGCTATAGGTCCAGGATGGACTAGCTATAGGTCCAGGATGGACTAGCTATAGGTCCAGGATGGACTAGCTATAGGTCCAGGATGGACTAGCTATAGGTCCAGGAAGGATGTCAAGGCTCAATGACCTGAAAGAAGGCCATGAGATGCTGCCAAGTTGAATGTCTCAGTGcacacaaatgttttgtcagtTAAATGGGTAAAGCACCATGGTACAGAATATCGCCTTGATTTGGCCATATGTGGTGAAGTAGTCATTGAAATGCAGGTATTTTACTAAATGAAGGCTATTGTTTTGAAagagaaatgttttgttgtttgggTCAGGTCTTGAAACCTTATGTTTTGATCATTTGCATGCATTTAAAGTTGTTTTGAAGCAAAGTCCACCATGCAAGGTATTTCATGTACCACAAACCTTTTGATTTCCTCATGTCATATGGAGCAAAGGATTTTTTTTGACTACATTGTCCCCTACTGTCACTTGATAACAGTTTAAGCCAGGTCTGAGACTTATGGTTTGGTTGTGAGAAACAAATTTGTTTTAATGTGAAAGTCAGTATTTTCCAACAAACCTTTTGATTTGCTCATGTCATATGGAGCAAGGGATTCTTTTGACTACATTCTACTGTCACTTGATAACAGTGTAAGGCAGGGCTGAGACTTGTGGTTTGGTCATAATAAACATATTTGAATGTTGAAACAGCTTTGCTTGAGCTTTGCTCCTCACCGG
>TU2056195
GGAATACTCCAAAGCTAAAAGCCTGACTGACTGCACCAGACGAAAGATGATCAACATTCTGGTTTCGGCGATGACAGAGACTCATGGATTGAACATAATTTTGTGCTGCTGTTTGGAGAGGGAATATCAGCCAGGTCTTTGGAGTGGTGGCCAACTACATTCAAGCAAAATATCATCATGCTAAGCAAGACCCTAAGCAAGACCCCTGATTGAGCTGAACTTCAGGAGCTGATCCAGATGGAAGAATCTGCAGTTAATGAGGGAGCTGACACAAATGCTGACGGATGGGACGGTGACCtttcctccatccttctcctgcTCCATTTGATTCCTTCATCACAAGGCTGCAAAAGACCAGGCAAGATGTCCGCATCCCAAGCTGAACAGCATCTTGTGATATTCTAAAAGGCAGGAACCAGTATCCAGGAGCATCTTTATGCGATTGACCAGAGCCGCCA
>TU2056199
CTAATTGTAGGTTGTTGTTTTAATGTTTGTCACAGCTTTCCTGACATTTGAGATCCCACTTACTAGTTTATCAGAGACAAAGCTGTATGATGGGTCTGGAACTGAAGTTGATGGGGATGTGTTTGAGGAGGTGGTGACACGGCCAGATTTAGGTGTTTTCAAGCTCACACTGAACAATGATGCTAAAGTTATGTGCTGGTTATCAAGTCGTGGTTATTTGTGGCATCACTTTCAATATAACCATACATTTGACATGTCTGTGTTGTTATTGTGTATTTCAGAATCTTCCCTGGTGAGTCCTGTCTCTGCCAGTTCTGTGATGGGTGGTTCAGACCATGAGTCGGATGATACAATTATTT

Function

NR:

description
uncharacterized protein LOC105357795 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038812.1 False 3561 mRNA 0.41 5 28819330 28826708
TU2056195 False 458 lncRNA 0.47 4 28821738 28826108
TU2056199 True 359 TUCP 0.41 1 28826287 28826645

Neighbor

gene id symbol gene type direction distance location
trnan-guu-200 NA coding downstream 99198 28720059 ~ 28720298 (-)
LOC110501696 LOC106582163 coding downstream 270765 28538705 ~ 28548565 (-)
LOC110502083 LOC101162407 coding downstream 756647 28058893 ~ 28062683 (-)
LOC110501691 LOC106582059 coding downstream 800214 28009421 ~ 28019116 (-)
LOC110501689 LOC106582060 coding downstream 906411 27903582 ~ 27912919 (-)
LOC118943585 NA coding upstream 497437 29324145 ~ 29325269 (-)
LOC110501708 LOC106582177 coding upstream 606844 29433552 ~ 29441071 (-)
dnajc15 dcj15 coding upstream 779355 29606063 ~ 29619908 (-)
tnfsf11 LOC106582173 coding upstream 880104 29706812 ~ 29727741 (-)
LOC110501713 LOC106582171 coding upstream 918661 29745369 ~ 29770850 (-)
G1796699 NA non-coding downstream 23015 28796110 ~ 28796315 (-)
G1796695 NA non-coding downstream 26726 28792392 ~ 28792604 (-)
G1796687 NA non-coding downstream 63073 28756008 ~ 28756257 (-)
G1796546 NA non-coding downstream 63939 28755142 ~ 28755391 (-)
G1796516 NA non-coding downstream 85382 28733708 ~ 28733948 (-)
G1796736 NA non-coding upstream 33109 28859817 ~ 28860023 (-)
G1796738 NA non-coding upstream 37411 28864119 ~ 28864548 (-)
G1796739 NA non-coding upstream 38291 28864999 ~ 28865208 (-)
G1796741 NA non-coding upstream 44876 28871584 ~ 28871918 (-)
G1796743 NA non-coding upstream 45887 28872595 ~ 28872805 (-)
G1796401 NA other downstream 192439 28626138 ~ 28626891 (-)
G1796239 NA other downstream 380559 28434915 ~ 28451815 (-)
G1796204 NA other downstream 484709 28334224 ~ 28334621 (-)
G1795850 NA other downstream 837951 27980664 ~ 27981379 (-)
G1797146 LOC106582182 other upstream 384956 29211664 ~ 29243649 (-)
G1797556 NA other upstream 832759 29659467 ~ 29660947 (-)
LOC110501714 LOC106582170 other upstream 1011569 29835498 ~ 29846456 (-)
G1797936 NA other upstream 1144850 29971558 ~ 29978535 (-)
G1798732 LOC106582226 other upstream 1244367 30071075 ~ 30071764 (-)
LOC110501699 NA other upstream 179 28819330 ~ 28826708 (-)

Expression


Co-expression Network