LOC110502085 (LOC106582160)


Basic Information

Item Value
gene id LOC110502085
gene name LOC106582160
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28977890 ~ 28984226 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038813.1
AGCTAAGGTTATATGGCCCACTCTCAGACGACTGGAAACATGTTAGTCAGGTGAAGACCCAGACACAAGACATTGTCCCAACTATTGGCTTCAATATAGAAAAATTCAAGAGTTCAAGTTTGTCTTTCACAGTGTTTGACATGTCTGGTCAGAGCAGATATAGAAACCTATGGGAACATTACTACAAAGAGAGTCACGCGATCATATTTGTCATCGATAGTGGAGACAAGTTACGAATGGTCGTTGCCAAAGAGGAACTTGATACTCTTCTCAATCACCAAGGTAAGAGAATGAGacagtaagaaagagagagagacaggaagagtaAGTGTaagagtaagagagggagagaaggggagaaagacagacagacagacagacagacagacagacagacagacagacaaacacactttCTTCACTTGTTCTCTGGTGTTCCTGCTCCCTCCAGACATCTGCAGTAGGAGG
>TU2056145
ACTGGACTGCCAACCTGCTGTCTAGTTACATAGTCCTCATATCCATGGCAACATTCTATTTTAGAACCTTAGACTAAATTGTAGCGATAAATTGTAGAAACTTTAGATTATATATTGAGGGGGTAGATGGCTTATACCGAATTCACATTTAAACCTTAGGTTCAGATGTTGTAAGCAGGACAAATGGGCCTGTTTGATAAACTGTCGGGTTGGCTGGGTCTGAAGAAGAAAGAAGTGAACGTGTTGTGTTTGGGACTGGACAACAGCGGGAAAACCACCATCATCAACCAACTCAAGCCCAGTAATGTAAGTCCACTGACATGGCCTAACTATAATTGAACATATGGGCCTACTGTAGTCCATTGACTGATGTATTTGATTGGGTTCTAAATTGAAACGGATTAACGTGGTGGCCTGCTCTAGGCGCGCGCGTCCTTTGCGCGCTGGCCTGTCAATGGAAAGAGACGGAGTTGTGTATCTGAGTTGAGTGAGCTGAGCCATGGAGATGGTGGTTATACATAAGCGCTGTGAGTGTTAACCGTTGTggttatacactacatgaccaaaagtcattgaacatctcattccagaattaatatggagttggtcccccctttgctgctataacagcctccactcttctgggaaggctttccactagatgttggaacattgctgcagggacttcctTCCTTTCACCCACAAGAGCAttactgatgttgggcaattaggcctggcttgcaggcAGCGTTCTAATTCATatcaaaggtgttcaatggggttgaggtcagggctctgtgcaggcccgtcaagttcttccacactgatcttgacaaatcAGTTCTGTATGAACCTTGCTTTGTGcccaggggcattgtcatgctgaaacagaaaatggccttttccaaactgttgccacaaagttggacgcacggaatcgtctagaatgccatttttgtatgctgtagtgttgatttccctttactggaactaaggggcctagcacaaaccatggaaaacagccccagaccattatttctcctccaccaaactttacagttggcactatgcatttggacaggtagcgttctcctggcatccgccaaacccagattcgtccgtcggactgccaaatggtgaagcgtgattcatcattccagagaacgcgtttccactgctccagagtcagcAAGCattacaccattccagccaacgcttggAATTGCGCATGGGGATCTGAGGCTTGTGTGTGgttgcttggccatggaaacccgttTCATGAAGCTCCAATGAACAGTTCTTgcgctgatgttgcttccagaggcagtttggaacttacAACATTTCCCAATGGGGAAAATAAAGTCAAAGTCAgtaaagtagtgagtgttgcaactgagggtAGATGATTTTCaccgcttcagcactctgcggtcccattctgtgagcttgtgtggccttccaCTTTGTGACTTaaccattgttgctcctagatgtttccacttcacaataacagcacttacatttgagctctagcagggcagaaatttgacgaacggacttgttggaaaggtggcatcctatgacggtgccacgttgaaagtcacagagctctTAAGTAAGGCCCATGaatttgatacacctgtcagcaatgggggTGGCTGAAGtaaccgaatccactaatttgaaggagtgtccacatacttttgtatatatagtgtatattagaACTGTGAATTTTAGGCATTGTGGTTATaagcagtgatgtagtggtaaacaAAAACATAGGTGGGTAAACTGATCGCCAGTCGCGGTGAAAAGAGTAACGTTCCCTATACTTTCCATGAATTCTTTCCCAAAAGGTGGGCGTACTGTCATGCAAAAAATAAAGGTGAGTAAATTGTGTTACTTGCGTTTactctccactacaccactgattataagagctgtgagtgttatCACGTTGTGGTTATACATACGAGCTGTGAGTGTTATCGCGTTGTGGTTATACATGCGAGCTGTGAGTGTTATCGCGTTGTGGTTATACATACGAGCTGTGAGTTTTATCGCATTGTGGTTATACATACGAGCTGTGAGTTTTATCGCATTGTGGTTATACATACGAGCTGTGAGTGTTATCGTGTTGTGGTTATACATACGAGCTGTGAGTGTTATCGCGTTGTGGTTATACATACGAGCTGTGCGTGTTATCGCGTTGTGGTTATACATACGAGCTGTGTGTGTTATCGCGttgtggttatatacagtataagaCCTATGTGTTATTGCATTCGTTACTCTGCAATTATCCACTGCTTGCTTGTTTTCAGCTAAGGTTATATGGCCCACTCTCAGACGACTGGAAACATGTTAGTCAGGTGAAGGTCAGTACAGCCTATTTCACCCTATTTTAACATTTCTTTTTGATACACTTCAGTtattgtttgtctgtctgtgttttgttTGTGCGTATTACAGACCCAGACACAAGACATTGTCCCAACTATTGGCTTCAATATAGAAAAATTCAAGAGTTCAAGGTAGTAATTAACTTGTAATGTAAACTATGATTAACTTAGTGAACCGGGAAAAAGTCATACTAATTATATTACTATAGTGCGTTAATGCGTAACATGTATTTTGTCTCTACAAAGTTTGTCTTTCACAGTGTTTGACATGTCTGGTCAGAGCAGATATAGAAACCTATGGGAACATTACTACAAAGAGAGTCACGCGATCATATTTGTCATCGATAGTGGAGACAAGTTACGAATGGTCGTTGCCAAAGAGGAACTTGATACTCTTCTCAATCACCAAGACATCTGCAGTAGGAGGATGCCTGTGCTGCTCTTTGCTAATAAGAGTGACCTGAGAGAAGCCATGTCTTCAGTCAAAGTCTCTCAGCTGCTCTGTCTGGAGAACATCAAGGACAAACCCTGGCACATCTGTGCCAGTAATGCTGTAAAAGGAGAGGGCCTACAGGAGGGGGTGGACTGGCTACAAGGTACATAactgcgtgtgcgtgcatgtacgTGTACTTTTTTCTGATGGAATTCTGGCACCTATATTGAATCATTCTGTTTTGTTCTACCTTACCCATAGAGCAAATTGCACAGTAAGTATAATGTGTGCTCACATTAGTTTATGTCACTGTGGtggatgtagatgatgatgttgttgatggGTTTGGAGCAGGGGAGACTATTCAGTCTGTAACAGGTATAATGTTGACGTGTGTCTCATGATAATTCATCTCCCCTACTCTTAACCCTCTAGTGAAGGGCTTTTCTAATGTAGTTGTGGAGCTTCAGGTCTCATTGTTGAGGCTGTTTGTTGTTGTAACTATCATCTCATGAATTGTCCATACATTTATAAACATATATTGTCCATATGTTTATCAACAGATCATATCAGAATAATGAATGAAATTAAATGAATGAAAGGCTTACGATGAAGGATTgtgatggagagaagagggaCCTCCACAACTACAGCATGGCTCCTCCAACCAGCTGTGTCATTGCTTATCTTCTGTCactatttacatacagtatgtggtgCAAGGGAATCatctgtttttcctttctatttgATACTCTGTCATGATGCCTACTGAtgcctactgtatgatactgtTGTAAAGTGTGGATGTGAAGTGTTGTTGAACCGCTTGCTGCAGTGAAGAGAGACCACCCTCTGAGATGGATTCACCTGGGATGGCATGTAGTCTCGGGGTTTTACGAGCGTTGGACCAGCAACCGAAATGTCgatggttcgaatccccaagccaacgaggtgaaaaatctgtcgatgtccccttgagcaaggtacttaaccctaattgctcttgtaAGTCGCTCTTGATAAGAGCctctgctgaatgactaaaatgtaaatgtgatcaGACTGTTATTCAGTTACAGCACgtgatgtgtaactgtgttgtctgCTTGTGGAAAGATATGATTAATGTATTCTGTTGTTAAACATTTTACCCTCCATATTTCTGAACTGTACTTGATGCTCGTTTTGTATGCCATTAAATGTGCTGTGATGTTTTCAGACATAGTACACCAGTCAGTGCTACAATATATTGCTATATATGTTGGGATGTTTTAATGAAAACAATTAAAGGCGTAGCATTTGC
>TU2056148
ACTGGACTGCCAACCTGCTGTCTAGTTACATAGTCCTCATATCCATGGCAACATTCTATTTTAGAACCTTAGACTAAATTGTAGCGATAAATTGTAGAAACTTTAGATTATATATTGAGGGGGTAGATGGCTTATACCGAATTCACATTTAAACCTTAGGTTCAGATGTTGTAAGCAGGACAAATGGGCCTGTTTGATAAACTGTCGGGTTGGCTGGGTCTGAAGAAGAAAGAAGTGAACGTGTTGTGTTTGGGACTGGACAACAGCGGGAAAACCACCATCATCAACCAACTCAAGCCCAGTAATCTAAGGTTATATGGCCCACTCTCAGACGACTGGAAACATGTTAGTCAGGTGAAGGTCAGTACAGCCTATTTCACCCTATTTTAACATTTCTTTTTGATACACTTCAGTtattgtttgtctgtctgtgttttgttTGTGCGTATTACAGACCCAGACACAAGACATTGTCCCAACTATTGGCTTCAATATAGAAAAATTCAAGAGTTCAAGGTAGTAATTAACTTGTAATGTAAACTATGATTAACTTAGTGAACCGGGAAAAAGTCATACTAATTATATTACTATAGTGCGTTAATGCGTAACATGTATTTTGTCTCTACAAAGTTTGTCTTTCACAGTGTTTGACATGTCTGGTCAGAGCAGATATAGAAACCTATGGGAACATTACTACAAAGAGAGTCACGCGATCATATTTGTCATCGATAGTGGAGACAAGTTACGAATGGTCGTTGCCAAAGAGGAACTTGATACTCTTCTCAATCACCAAGACATCTGCAGTAGGAGGATGCCTGTGCTGCTCTTTGCTAATAAGAGTGACCTGAGAGAAGCCATGTCTTCAGTCAAAGTCTCTCAGCTGCTCTGTCTGGAGAACATCAAGGACAAACCCTGGCACATCTGTGCCAGTAATGCTGTAAAAGGAGAGGGCCTACAGGAGGGGGTGGACTGGCTACAAGGTACATAactgcgtgtgcgtgcatATCATATCAGAATAATGAATGAAATTAAATGAATGAAAGGCTTACGATGAAGGATTgtgatggagagaagagggaCCTCCACAACTACAGCATGGCTCCTCCAACCAGCTGTGTCATTGCTTATCTTCTGTCactatttacatacagtatgtggtgCAAGGGAATCatctgtttttcctttctatttgATACTCTGTCATGATGCCTACTGAtgcctactgtatgatactgtTGTAAAGTGTGGATGTGAAGTGTTGTTGAACCGCTTGCTGCAGTGAAGAGAGACCACCCTCTGAGATGGATTCACCTGGGATGGCATGTAGTCTCGGGGTTTTACGAGCGTTGGACCAGCAACCGAAATGTCgatggttcgaatccccaagccaacgaggtgaaaaatctgtcgatgtccccttgagcaaggtacttaaccctaattgctcttgtaAGTCGCTCTTGATAAGAGCctctgctgaatgactaaaatgtaaatgtgatcaGACTGTTATTCAGTTACAGCACgtgatgtgtaactgtgttgtctgCTTGTGGAAAGATATGATTAATGTATTCTGTTGTTAAACATTTTACCCTCCATATTTCTGAACTGTACTTGATGCTCGTTTTGTATGCCATTAAATGTGCTGTGATGTTTTCAGACATAGTACACCAGTCAGTGCTACAATATATTGCTATATATGTTGGGATGTTTTAATGAAAACAATTAAAGGCGTAGCATTTGC
>TU2056154
GTTTTCTGTTGTGGTGTCCACAGAGAGAGTCACGCGATCATATTTGTCATCGATAGTGGAGACAAGTTACGAATGGTCGTTGCCAAAGAGGAACTTGATACTCTTCTCAATCACCAAGACATCTGCAGTAGGAGGATGCCTGTGCTGCTCTTTGCTAATAAGAGTGACCTGAGAGAAGCCATGTCTTCAGTCAAAGTCTCTCAGCTGCTCTGTCTGGAGAACATCAAGGACAAACCCTGGCACATCTGTGCCAGTAATGCTGTAAAAGGAGAGGGCCTACAGGAGGGGGTGGACTGGCTACAAGATCATATCAGAATAATGAATGAAATTAAATGAATGAAAGGCTTACGATGAAGGATTgtgatggagagaagagggaCCTCCACAACTACAGCATGGCTCCTCCAACCAGCTGTGTCATTGCTTATCTTCTGTCactatttacatacagtatgtggtgCAAGGGAATCatctgtttttcctttctatttgATACTCTGTCATGATGCCTACTGAtgcctactgtatgatactgtTGTAAAGTGTGGATGTGAAGTGTTGTTGAACCGCTTGCTGCAGTGAAGAGAGACCACCCTCTGAGATGGATTCACCTGGGATGGCATGTAGTCTCGGGGTTTTACGAGCGTTGGACCAGCAACCGAAATGTCgatggttcgaatccccaagccaacgaggtgaaaaatctgtcgatgtccccttgagcaaggtacttaaccctaattgctcttgtaAGTCGCTCTTGATAAGAGCctctgctgaatgactaaaatgtaaatgtgatcaGACTGTTATTCAGTTACAGCACgtgatgtgtaactgtgttgtctgCTTGTGGAAAGATATGATTAATGTATTCTGTTGTTAAACATTTTACCCTCCATATTTCTGAACTGTACTTGATGCTCGTTTTGTATGCCATTAAATGTGCTGTGATGTTTTCAGACATAGTACACCAGTCAGTGCTACAATATATTGCTATATATGTTGGGATGTTTTAATGAAAACAATTAAAGGCGTAGCATTTGC

Function

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 6 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038813.1 False 468 mRNA 0.43 4 28980218 28981201
TU2056145 False 4147 lncRNA 0.43 5 28977890 28984226
TU2056148 False 1747 TUCP 0.41 6 28977890 28984226
TU2056154 True 1047 lncRNA 0.43 4 28980898 28984226

Neighbor

gene id symbol gene type direction distance location
epha6 LOC106582188 coding upstream 3479 28755790 ~ 28976739 (+)
LOC110501697 LOC106582162 coding upstream 277554 28701867 ~ 28702664 (+)
LOC110502084 NA coding upstream 583868 28236220 ~ 28400108 (+)
trnaa-ugc-174 NA coding upstream 689921 28290225 ~ 28290297 (+)
LOC110501694 LOC106582055 coding upstream 903647 28072420 ~ 28076571 (+)
LOC110502121 cld14 coding downstream 12132 28993333 ~ 28994549 (+)
LOC110501700 LOC106582186 coding downstream 16562 28997763 ~ 29010281 (+)
LOC110501701 LOC106586531 coding downstream 82438 29063639 ~ 29094498 (+)
LOC110501702 LOC106582183 coding downstream 120912 29102113 ~ 29167753 (+)
LOC110501703 LOC106582182 coding downstream 197670 29178871 ~ 29212842 (+)
G1796642 NA non-coding upstream 39080 28932411 ~ 28941138 (+)
G1796636 NA non-coding upstream 83342 28896642 ~ 28896876 (+)
G1796634 NA non-coding upstream 86418 28893212 ~ 28893800 (+)
G1796627 NA non-coding upstream 98427 28881516 ~ 28881791 (+)
G1796683 NA non-coding downstream 5371 28986572 ~ 28986873 (+)
G1796685 NA non-coding downstream 18380 28999581 ~ 28999793 (+)
G1796835 NA non-coding downstream 38842 29020043 ~ 29020596 (+)
G1796839 NA non-coding downstream 43417 29024618 ~ 29025673 (+)
G1796841 NA non-coding downstream 45874 29027075 ~ 29027468 (+)
G1795550 NA other upstream 888102 28091565 ~ 28092116 (+)
LOC110501693 LOC106582057 other upstream 942140 28036917 ~ 28052019 (+)
G1795411 NA other upstream 1067343 27898367 ~ 27912875 (+)
G1793717 NA other upstream 2663975 26315826 ~ 26316243 (+)
G1793045 NA other upstream 3248464 25731326 ~ 25731754 (+)
G1797582 NA other downstream 762991 29744192 ~ 29744854 (+)
LOC118943632 LOC100194703 other downstream 942356 29917773 ~ 29933035 (+)
G1798168 NA other downstream 1519455 30500656 ~ 30545954 (+)
G1798397 NA other downstream 1907460 30888661 ~ 30891067 (+)

Expression


Co-expression Network