LOC118943584 (LOC106582182)


Basic Information

Item Value
gene id LOC118943584
gene name LOC106582182
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29227671 ~ 29243652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959065.1
ATCTGTGATACTTTGCTGCTCAGCCTGTTGATGTGTTTACTATAATGGCAGATGCAATGGACTTGATGAATTGTTCAATTTGCCTGGATCTACTGAAAGATCCGGTGGCTATTCCCTGTGGACACAACTACTGTATGGGCTGTATTGAGGACTGCTGGAATCAGGGTGATCTTAACGGTGTCTACAGCTGCCCAAACTGCAGAAAGACCTTTACCCCGAGGCCTGTTCTGAACAAAAATACTCTACTGGTTGAATTGGTGGAGAAACTGAAGAATACAGGACTACATGCTGCTTTAGCTGCTCACTGTTATGCTGAACCTGGAGATGTGGAGTGTGATTTCTGCATTGGGAGAAAACTCAAATCTGTGAAATTctgtctggtgtgtctggccTCTTACTGCGAGACTCATCTACAGCCTCATTATGAAGTAGCTCCATTAAAGAAGCACAAGCTGGTCAAAGCATCCACACAACTCCATGAGATGATCTGCTCTCATCATGacaaactgctggaggtttaCTGCCGTACAGATCAGCAGTGTATCTGTTATCTTTGTACAGTGGATGAACATAAAGGCCATGATACAGTGTCAGCTGCAGCAGAAAGAAATGAAAAACAGaaaCAGTTGGATGAGAAACAGCAGATATTAAAGCAGAGAATCCAGAAGACGGAGATGGGGGTGTTGGAGGCGAGACAGTCTATACAGTTTGTCAAGAGCTCTGCACAGGCAGCAGTGGAGGACAGTGAGAGGATCTTTCCTGAGCTTATCCGCTCCATTGAGAGAAGGAGCTCTAAGGTGAAGCAGCTGATCAAAGCCAAGGAGATGGCTGAAGTGAGTCGAACTGAAGGACACCTGAAGCaactggaggaggaggtggttgagctaaggaggaaagacgctgagctggagcagctctcacacacagaggatcacatCCATTTCCTCAAGAGTTTCCAGTCTTTCTCTGTCCCGCCGGGAATTGAGGGCTTACCCAGCACTTttaaccctcatgtctccattgAGGATGTCAAGAAGTCCCTCTCTGAACTACAAGACCGAATGGAGAATGTATTCAATGAGGAAATGGTAAAGATATCTAGAAAAGTTGGATATGCCTTTCATTTAGCCAGTAGCCCAATGAGGAAAATCCTCTTCTGCTTTGGAGAATGCACCCCTGGCTTCAGCTTCCAACCAGTTATCAGTCCCTCCAAGTCCCCGGCCAAGCTGAACCGGATCAGGGTGTCTGTGGACGAGGACCAGGACGTGACTCAAGACAAACAGGCTACTAAAACCAAAGTCTTTACTGGTGGGTCAGCTTCAGTGGGAGGATTTACTTTTAGATTTGGGGCCGACTCTCAGCCCACCACCAACCCTCCCATCCCTGAGTCTGGCTACTTCATCAAGCCCTTCATCGTACCTGTCCAACCAGCTAAGAGCATTGGGCGAAAGCCTGTGGACTTTGGGAAGATGTCTTTTGGCCAGCCAATCCCTGCTGAGCCTCCTAAAGTGCTTAGCTTTGGTGCTGGAATAGTCGCCCAGTCCACTCCATCATCCGCTGCCTTTAAATTCAACTCCAACTTTAAATCCAATGACGGGGACTTCACCTTCAAGTCCAAAAACAATGAGAGCCTGTTAGGTCTTCTGACGTCAGACATTCCCACCAAATCAGAGGACCCCTCAGAGGGGAAGCCCCAATATCCTCCTAGCCTGGGAGGGATACTTACCTTTGGCACTAAAAGCGCTCTTGGGTTCTCCTTTAATGACTCAATCCAGATCCAGGACAAACCAAACCTGTTTGGAAAATTTGACCAGCCATTTAGTTTCACTGATGTAACCACGCCGGTATTTGGGCTGGCAAACACAGCAGTGGAGGAGAAGGGAGCCGAGAGCAATAACGACAGCACTCATGTGGAGGAGGACAAGAATGGGCCTCACTTTGAGCCTATTGTGCCCCTCCCTGACAAAGTAGACGTGaagactggagaggaggaagagaaggagatgtTCTGTAACAGGGCCAAGCTGTTCAGATTCGATGCGGAGACAAaagagtggaaagagagaggtatCGGCTTAGTCAAAATCCTAAAGCACAATACATCAGGGAAAGTGCGTCTACTGATGAGGAGGGAGAAGGTTCTAAAGGTCTGTGCTAACCACTACATCACGCCAGATATGCTCCTGAAACCAAATGCTGGATCTGACAAGTCCTGGGTCTGGAATGCCGTTAATTATGCGGATGAGGAACCAAGGCCTGAGCAACTGGCCATCCGGTTCAAAACGGAAGACGAGGCATTGCTCTTCAAGACAAAGTTTGAAGAGGCTCAGAAGATCGTTCCCAAATCTCCAGAAAAGCAGCAAGATCAGTCATGTAGGGAAAAAAAATATCCTAAACACTCTGCCCCAGAGGCGACAAACTTTGGTGCCCAGTTTGCAAAGAAGTACGGGGAGTGGGACTGCAATGTGTGCTGTGTAAGAAATGCAGCTAAAGttatgcagtgtgttgtctgCCAGACTGCCAACCCTAATGCCCCATCAAAGCTGGACAGCGCACCGGCTACTGACATCAAAGGCTTTACTAGTGGGGCAGCTTCAGTGGGAGGATTTACTTTTGGATTTGGAGCTGACTCGTCAAAAGACACCAGCAGCGCAGGATCTATTGGAAAAGGATTTGGGTCTTTTGGAGCTCATATACCCTCCTCCTTTACGTTTGGAACCAGTGGCACCACTTATATACCTGCTGCTGGTTTTGGTGCCCAGTTTGGAAAGAGGCAAGAAACCACAAAAGTATCAGCAGAATCAAAGCCCTCAACCATGCCATTTGGCTCTGGATTTGGTGTGCAGTTCGGCATAAATCCAGGGCAGTGGGACTGCGATACATGCACTTTAAGAAATGAGGCATTTGCAAACAGATGTCTCTCTTGTCAAACTCCTAACCCTTCAGGAAAACCTGCTGCTGGTGCCCCAGCTTTGGCAACCCTCTCAATTGGGTCTGGATTTGGTGCACAGTTTGGCAAAAAACCAGGGCAGTGGGAGTGTGACACGTGTCTTGTTAGAAATGAGGAGTCTGCTAGCAGTTGTGTTTCTTGTCAAACTCCAAACTCTGTAGCCAAAACAGATGTAGATGAAGCAGCAGAATCAAAGCCCTCAACCATGCCATTTGGTGCCCCGGCTTTGGCAACCCTCTCAACTGGGTCTGAATTTGGTGCCCAATTCAGCAAAAAGCTAGGGCAATGGGACTGTGATACATGCGTTGTAAGAAATGAGGCTTCTTCAAGCAGTTGTGTTTCTTGTCAAACTCCTAACCCTTCAGCAAAATCAACAGTAGAGGTAGCACCAACAACAGAGCCAACAGTGTCAGACTTTGGTGCTGCTTTTTCAAGGAAGGATGGACAATGGGACTGTGACACCTGTCTAGTGAGGAATGATGCATCTGCCTCTAAGTGTGTTTCCTGCCAGACACCCAACCCCAATGCTAGCAGCTCCTCTCTTAGGGCCATGTTTGCCAGGCAGGAGAGACAGTGGGACTGTGACACATGTCTAGTCAGAAACAACGACTCTGCTAGTCAATGTGTCTCCTGTCAGATGCCCAATCCCAATTTTAAGAGCATAGCCACAGCCGCCACTTCCAGCTCATCCTTCAGCTTTAACTTCGGGAGTCGGACTGCCTCTACTCAACCCACAGGCACTGGGTTTAAAGCGAACTTCAAGGGTGACAGCTCTTTGCAGTTTGGCACAGGCAAAGTTGATAAAAGTTCCCCTGCATCCTTCAAGTTTGAGACCCCTCCTCAGGCTGAAAGCAGTACCCCCAGTGCTGCAGGCTTCTCTTTCACCATGCCCATCCCAGCAGGTGGCTTTAAGTTTGGCACTCAGGAAACTGCAAAGGAAACCCTACCAGCTGAAACTCAGACCCCTGCTTCAGGGTCTGCGTCAATGTTCCTGAAGAATATCGCAGAGCAGCACAGAGAGAAGGAATTTGGTGTCAGTGTATATGCATCAGTGCTGTCAGTGGACAAGACGGGTCAGGATGAAAATCCCCTCTTCATTGGCAAACCCAACGACTTCAGTTTTGCAGACTTGGCTAAAAACTCACAAGGAGACTTCCAGTTTGGTCAGACTGACTCCAATTTCAAAGGCTTCACCCGCGCTGGTGAGCAGCTGTTCACATCCCTTCAGTCAAACCAGAGGGCAGACACCTCAGCTGACCAGGATGAAGAGGGCATATACAAGACAGAGGATATTGACGATATCCAGTTTGAGCCTGTGGTCCAGATGCCAGAGAAAGTGGACCTGGTCACAGGAGAAGAGGACGAACAGGCTCTCTACTCTCAGAGAGTGAAGCTCTTCAGGTTTGATGGAGACATCAGCCAGTGGAAGAAGAGGGGCGTTGGGGTCCTCAAGTTCCTGAAGAACGCCACCAATGGCAGGCTCAGGGTGCTGATGAGGAGAGAGCAGGTCCTGAAGGTGTGTGCCAACCACTGGATCACCACCACCATGAACCTGAAGCCCTTGGCTGGCTCCGACAAGGCCTGGATGTGGCTGGCTAATGACTTCTCTGATGGAGATGCCAGACTGGAGCAACTCGCTGCCAAGTTTAAAACCCCTGAGCTGGCTGAAGAGTTCAAGCTGAAGTTTGAGGAGTGTCAGAGGCTCCTGTTAGACATCCCACTGCAGACTCCTCACAAGCTTGTTGACACAGGCAGAACTGCACATCTCATCCAGAAGGCAGAGGAGATGAAGTCCGGCCTGAAAGATCTTAAATCTTTCCTGACCGATGACAAAACCAAGATCAAGGATGACGACAGCCATGCTAACATCACGACAGCCAGTAACACCTCTGGTCTGAATATCAAGCCCCACGCAGAGAACACTGGCCCTACCTTAGAATGGGACAACTATGACCTGAGAGAGGAGGCTCTGGACGACAGTGCTGACACCTCTGTCTACGCCTTACCCCTGGAAAGCAGCCCAATCAGGAAGAACCTCTTCTGCTTTGGAGAATCCACAGAGGGCTTCAACTTCAGCTTCCAGCCTGTCGTCAGTCCCGCCAAGTCGCTGGCCAAGATGAACCAGAGCGGGGTGTCTGCGGACGAGGAGCAGGACATTAGCCAGGAGGAGGAGCGGGACGGCCTGTACTTTGAGCCTGTGGTTCCCCTGCCAGATCTGGTGGAGATCTCCACTGGAGAGGAGAATGAAAACGTGTGTTTCAGCCACAGGGCAAAGCTGTATCGCTATGACAAAGACCTGAAccagtggaaggagagaggcatcGGAGACCTCAAGATACTGCAGAACTGCGATACCAAACGAGTCAGACTCATCATGAGGAGAGACCAAGTCCTGAAAATCTGCGCCAACCATTGGGTCACATCTTCTATGAAGTTGGAGCCCATGAAGGGTGCTGAGAAGGCATGGGTCTGGAGCGCTATTGACTTTGCCGAGGTAACTAAGGGAAATGTTGAGCAGTTAGCTGTGAGATTCAAACTGAAGGATGTGGCTAACTCCTTCAGAGATATATTTGACCAGGCTAAAACTGCCCAAGAGAATGAGATTCTGGTCACTCCAATCGCCTCCAGTGAGACCTTTACTCAGGAGGAAGCAATAGCGACGGGGACAACCGTGTGTGGACGAGCTGCTGTGGCCATCCTGGAGGAGACCACCACAGAACGGACGGAGCTGTATCATGAGACTTTACACACCCCTGACTGTAAGTCCTCCACCGGTACTCCACATAGCCCTCTCAACCTCTCCAGGATGGTGATGTCCCCACCCAAGTTCCTCTTTGGAACAGACTCTCTCCAAAAGTTTTACGGCAGCAGCCCACCGTCATCCAAGGAGGATAGTTCTCCAGAGAGCTCCAAGGTTAAAGACAGCAGTCGGACCTCCCAGCCTTTAACTGCATTCAAAATCTCAGAAAAGGATGAGGACTTTGAGACAGCAGTTAAAGCCCTGAATGGAAAACTGTACCGGGATCCTCCTGAGAGAGAGGCTGCAAGTGCAGGTTCTGCAGGCCAGGCCGAGGCAGGTGTTGAAGGTCTGGACCCGGAGGTTGAGGTTTTATGGGAGAAGAGGCCAACTCCAGAGGAGGAACAGAAAGCCAGGAACCTGCAGCTGCCTTCAACCTTCTTCTGTGGTGTAGGCAGCGACAGCGAGGCAGAGAAGGACAAGCCAGAGGACTTTGAGACAGAGTTCCGCAAAGCACAGGAGGCTCTGGATGCTGAGAGAAGCTCAGACCCTGTTTCATCTGAGGATGTGTCCTCCAGCACCTGCGATTCAGTGCCAGAACAACAGGTCCCAGACCAGTACCCCAGCAGCCAGGAACAGGCTTCAGATCAGTCTGGGGCAGAAGTCCAGTCCACTACAGCAGAAGAACAGGTCTCAGATAAGTCCTTAACCATACAGGAGGCTGAAATCCCAACCCCAGGTAGCCAGGAACAAGCCACAGAACAGTCGGTTACCATCCAGGAGGCAGAAGTCCAGTCTTCTACAGCAGAGGAACATGTCCCAGATCAGTCCTTAACCATACAGGAGGCTGAAATCCCAACCCCAGGTAGCCAGGAACAAGCCACAGAACAGTCGGTTTCCATCCAGGATGCTGACATCCAGTCCTCTACAGCAGAAGAACAGGTCTCAGTTCAGTCATTAACCATTCAGGAGGCAGAGGTCCAGTCCTCTACAAAGGAGCAGCAGACTCCAGATCAGTCAGACTCCACTTCAACACCATCGCAGACTGCCGTCTCCCGCAGCAGGGAGCAGGCTACAACTCCAAACCCTTCAGAAAAACCTGCTGCTAGTGCCCCAGCTTTGGTAACCCCCTCATTTGGTTTTGGATTTGGTGCACAGTTTGGCAAAAAGCCAGGGCAGTGGGAGTGTGACATGTGTCTTGTTAGAAATGAGGAGTCTGCAAGCAGTTGTGTTTCTTGTCAAACTCTAAACCCTGCTGCCAGCAGCGGGGAACAGGTTCCAGATCAGTCAGACTCTACTCCTGCAGCTACCAGCAGCAGCCCTATAGACCTGTCTGCCAAGAAGACCTCTGAGCCAGACTCCAATACTACATTTACTACAACCACTACTCAGGATGCTCCTAACTCATTTGGCTCATTGGGCTTCAGTGCTCTAGGAGGGGAAGGATTCTCCTTTGCTGATCTGCCACAGAACACTGGGGGGGAATTTGCCTTTGGAAAACAAGATTCCAACTTCTCGTGGGCGAACGCCGGGGCTACGTTGTTTGGAGCTGCAGACCCAGCCAAAGCTGacggaggggaggaggagtgtgatgaagGGGACACTAATAATGTGGGCATTGACTTTGAACCCATAGTCTCTCTACCAGAGGTGGAGACTAAGTcaggggaggaggatgaggagatccTGTTTAAGGAGCGTACCAAGCTGTACCGCTGGGAGAGAGACCTGGGCCAGTGGAAGGAGAGGGGTGTGGGAGACATCAAGATCCTCTTCCACCCCGATAAGAGGTTCTACCGGGTGCTGATGAGGAGGGAGCAGGTGCTGAAGGTCTGTGCCAATCACACCATCTGTCAGAGCATGGAGCTCAAACCCATGAACACCTCTAACCAAGCCCTAGTCTGGACAGCTACTGACTTTTCAGaggGTGAGGGTAAGGTGGAACAGTTGGCAGCCAAGTTTAAGACCGCGGAGCTGGCCGAGAGTTTCAGGAAGGTCTTCTGTGAGTGTCAGAGTCGAATGAGCCAATCAGAggcctccaccctctcctccccccagctgTCCAGGGTACAGGAACATTCCAGAGACACCAATCCCCAGGTGTACCTCTCTATCTCCGCTGACGACGAGCCCCTGGGAACGGTCACCATAGAACTGTTCTCTCACATCGTCCCCAAGACAGCTGAGAACTTCAGAGCTCTGTGTACAGGACAGAAAGGCTTCGGGCTGCGCAACACTGTCTTCCACAGGGTCGTACCCGACTTCATGTGTCAGGGTGGAGACATCACCAACCAGGATGGGACAGGAGGGAAATCCATCTACGGGCACAAGTTTGAGGATGAGAATTTTGACGTGCGCCACACAGGCCCAGGGCTGCTGTCCATGGCCAACCACGGCCGAGACACCAACAACTCCCAGTTCTTCATCACTTTGAAGAAGGCTGAGAACTTGGACTTCAAACATGTGGCCTTTGGCTTCGTCAGAGAGGGCATAGATGTTGTTCGCAGCATGGGAAAGCTGGGCACCAAGACTGGCCAACCCAGCAAGAAGATTGTCATCACCGAATGTGGACAACTGTAGAGCTTCGTTCTGTtcactgactgttgacatctcaACTGTAGAGCTGAGATCTGGtcactgactgttgacatctcaACTGTAGGGCTGAGATCTGGTCACTGACTATTGACATCTCAACTGTAGAGCTTCGTTCTGGTCACTGACTGTTGACAACTCAACTGTAGAGCTTCGTTCTGGTCACTGACATTGGACATCTCAACTGTAGGGCTGAGATCTGGtcactgactgttgacatctcaACTGTAGGGCTGAGATCTGGtcactgactgttgacatctcaACTGTAGAGCTTCGCTCTGTTCACTGACATTGGACATCACAACTGTAGGGCTGAGATCTGGTCACTGACTGGACGTCTATCGGCCTTCGCTCTGGCCATGGACTGGACAGTGATAGGTTTTCAAACTGTGGAGTGGACAACTATAGTAGGAAAATCTCAAATGAGACCCTATACCTCATGTAAtgtgaaacatgttttttttttttaccagagcccaTGTGGAGTGCACTAAGGGTTCTGGTAGTGTACTACAGGGGAAATAGCGTGTCATTTGAGACAGAGATGGTCTACTTTTCATAAGTGTTAACCCACCCTGAAGGTAGCATGTGACTGTGTGAATCCCCAGTCTGTATTTTTGTGTATAATGCACATTCACTTTTCATGTGTTCCAATAAGAGTTGAAAACGCTGGTTCCTTCATAAGCTCCCTAACTTGATTGTTTTGCATAATTAAGCCTTCATTGAGATTAACAAGAAACCTTGTTTAAGAACCAACCTCTGTTCATTTGAACGAttttcctctctcctgctccctgTGAATACTTTtaggtgtggtggtgtgtttttgtgtatACATTGATTTCATAATGTACAAATCATTGAGACGAACCTTGTTCATCTTAAACTCCGAAAGTAGGAATATGATGAACTATAACCTGCTGTGTGACACTTTGGGAGAGGGATGACATAATATCTTATGGTTGTGGAAGAACCTTCTATGGTATTCTGTTGACAAATATCACTTGGAGTTGAAACAATTCTTATGGTCAATATATAAATGATGCTGGAGAATGTCTTTAGAAATAAAGTTGCTTTATACTGATAA

Function

NR:

description
E3 SUMO-protein ligase RanBP2-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959065.1 True 9372 mRNA 0.50 14 29227671 29243652

Neighbor

gene id symbol gene type direction distance location
LOC110501703 LOC106582182 coding upstream 14829 29178871 ~ 29212842 (+)
LOC110501702 LOC106582183 coding upstream 59918 29102113 ~ 29167753 (+)
LOC110501701 LOC106586531 coding upstream 133173 29063639 ~ 29094498 (+)
LOC110501700 LOC106582186 coding upstream 217390 28997763 ~ 29010281 (+)
LOC110502121 cld14 coding upstream 233122 28993333 ~ 28994549 (+)
tpt1 tpt1 coding downstream 11705 29255357 ~ 29258127 (+)
LOC110501705 NA coding downstream 17278 29260930 ~ 29264418 (+)
LOC110501706 LOC106582180 coding downstream 47285 29290937 ~ 29292575 (+)
tsc22d1 LOC107713726 coding downstream 97135 29340787 ~ 29427406 (+)
LOC110501709 LOC106582175 coding downstream 256498 29500150 ~ 29589083 (+)
G1796862 NA non-coding upstream 184214 29043150 ~ 29043457 (+)
G1796841 NA non-coding upstream 200203 29027075 ~ 29027468 (+)
G1796839 NA non-coding upstream 201998 29024618 ~ 29025673 (+)
G1796835 NA non-coding upstream 207075 29020043 ~ 29020596 (+)
G1796685 NA non-coding upstream 227878 28999581 ~ 28999793 (+)
G1796954 NA non-coding downstream 4285 29247937 ~ 29248165 (+)
G1796955 NA non-coding downstream 5847 29249499 ~ 29249774 (+)
G1796971 NA non-coding downstream 31945 29275597 ~ 29275818 (+)
G1796977 NA non-coding downstream 52052 29295704 ~ 29295929 (+)
G1796994 NA non-coding downstream 71939 29315591 ~ 29315838 (+)
LOC110502085 LOC106582160 other upstream 243445 28977890 ~ 28984226 (+)
G1795550 NA other upstream 1135555 28091565 ~ 28092116 (+)
LOC110501693 LOC106582057 other upstream 1189593 28036917 ~ 28052019 (+)
G1795411 NA other upstream 1314796 27898367 ~ 27912875 (+)
G1797582 NA other downstream 500540 29744192 ~ 29744854 (+)
LOC118943632 LOC100194703 other downstream 679905 29917773 ~ 29933035 (+)
G1798168 NA other downstream 1257004 30500656 ~ 30545954 (+)
G1798397 NA other downstream 1645009 30888661 ~ 30891067 (+)
G1798579 NA other downstream 2002829 31246481 ~ 31292205 (+)

Expression


Co-expression Network