LOC118943585


Basic Information

Item Value
gene id LOC118943585
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29324145 ~ 29325269 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038814.1
GGTCGTCAACTGTTTGTGACCCAACTGTTATCAACTGCACGTGAAGAACAGAAATCAAAGGATTGCTGCTATGTCTGAAAAAACGGAGGTTGATTTAACCGGAGCTAAGCAAAACCATGGCGTATGGCTAGTAAAGGTTTCCAGTGCCGAGCCCAGCAGTGCGCCAACGCGTCAGGGAAAGGAGAGGTTGGAAAGTGTCATTCACACTGAATGAGGACCTGACCAGCCTGTCTGCATTTGGGGAGAAGGCAGCGTCGGTACGAGCCCCACGGGACCATCCAATGACCATGCACAGTGTAGGGGGAAAGACTATGGCTGTGTTCACTGAAAGCT

Function

NR:

description
general transcription factor IIF subunit 2-like isoform X1

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0006413 translational initiation biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005674 transcription factor TFIIF complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038814.1 True 333 mRNA 0.51 3 29324145 29325269

Neighbor

gene id symbol gene type direction distance location
LOC110501699 NA coding downstream 497437 28819330 ~ 28826708 (-)
trnan-guu-200 NA coding downstream 604013 28720059 ~ 28720298 (-)
LOC110501696 LOC106582163 coding downstream 775580 28538705 ~ 28548565 (-)
LOC110502083 LOC101162407 coding downstream 1261462 28058893 ~ 28062683 (-)
LOC110501691 LOC106582059 coding downstream 1305029 28009421 ~ 28019116 (-)
LOC110501708 LOC106582177 coding upstream 108283 29433552 ~ 29441071 (-)
dnajc15 dcj15 coding upstream 280794 29606063 ~ 29619908 (-)
tnfsf11 LOC106582173 coding upstream 381543 29706812 ~ 29727741 (-)
LOC110501713 LOC106582171 coding upstream 420100 29745369 ~ 29770850 (-)
LOC110501714 LOC106582170 coding upstream 510229 29835498 ~ 29846456 (-)
G1797202 NA non-coding downstream 7210 29316671 ~ 29316935 (-)
G1797189 NA non-coding downstream 29999 29293901 ~ 29294146 (-)
G1797188 NA non-coding downstream 30901 29292897 ~ 29293244 (-)
G1797179 NA non-coding downstream 54483 29269364 ~ 29269662 (-)
G1797168 NA non-coding downstream 73931 29249766 ~ 29250214 (-)
G1797285 NA non-coding upstream 102217 29427486 ~ 29427693 (-)
G1797288 NA non-coding upstream 105361 29430630 ~ 29430833 (-)
G1797290 NA non-coding upstream 107373 29432642 ~ 29432881 (-)
G1797296 NA non-coding upstream 117317 29442586 ~ 29442813 (-)
G1797146 LOC106582182 other downstream 80496 29211664 ~ 29243649 (-)
G1796401 NA other downstream 697254 28626138 ~ 28626891 (-)
G1796239 NA other downstream 885374 28434915 ~ 28451815 (-)
G1796204 NA other downstream 989524 28334224 ~ 28334621 (-)
G1797556 NA other upstream 334198 29659467 ~ 29660947 (-)
G1797936 NA other upstream 646289 29971558 ~ 29978535 (-)
G1798732 LOC106582226 other upstream 745806 30071075 ~ 30071764 (-)
G1798781 NA other upstream 834965 30160234 ~ 30160686 (-)

Expression


Co-expression Network