tnfsf11 (LOC106582173)


Basic Information

Item Value
gene id tnfsf11
gene name LOC106582173
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29706812 ~ 29727741 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579453.2
ACAGAGGGAGCCGCTAGTCTTCTGCCCACCCACTGTTTATAgctctcctctgtcagaaactCAGAACTTCCTTCCTTGCAGTAAGAGTAGTCTATTCATCCAGAGCACCAGGACTCACCATGGCAGCTAATGACTACCGAGGCTACCTGAGGAACCACGCCGACATGGAGGGCGCTCAGTCCCGCTACCACCCGTCCCATGGCTCGGAACCCAAATATAGACCGTTTATATTCGTTACTCTGGCTGTTATGGGATTGCTGCAGATTGCATCGAGTGTGGCGATCTTGTTACACTTGACAGGTTATCTCCAAGAGGTCGATCTCTCCTCTGCAACGCAGCAGCCAATGGAGGAAGTGCAGATGGAACCCATCATGTTCGACGCCCTGAAGGACCCGAGGAAAGGCAGACAACGCTGCAAGAACCAGGAGAGGGAGGGGCTTCCATCAGCTCATCTACCAATCAGAGCAACTATAGACTATGTGAAGAAAGGGGAGCTGAGAGCAGCTATGATCCATTGGGATGAGGCGCAGGGCCACCTGAAGAAGATGCGTTACCATGACGGCCGTCTCCTGGTGGATGAGCCAGGCCTGTACTCCGTCTACGCCAAGACCTGTTTCCGCTACTACGACCTGGGACCTGACACAGAGCCTGGCGATGCTACGCCCCAGGCCGTGGACGTGAACAACGCCCAGCTCATCCAGTATATCTCCCACGAGAAACACACGTCCCTGCCCAGCAAGTCTGTGGTGCTGATGAAGACAGGCAGCACCATGCGCTGGAATAACTCCCAGTATAACATGTACTGTGCCCAGCAGGGCAGGGGGGTGATGCTACAGCAAGGGGATGGACTGTTTGTTAATGTGTCCAATGCCTGGATGCTGGATCCTGAACCAGAGGGGACGTACTTTGGGGCGATCAAGATAGGGAACTGAAACCGcgtacagaggaggaggaggatgtgctACTGAACGTTCTATAGACGTAACTGCCAAAGaaccactgagagagagacagagcacttGTTGTATGTAACATTactgaatttgtatttgatttgttTGAGTTTTTTATTGAAAGGAATGGGCTATGTTGCTCTTCACCAGATAGAGAATTAGGATATGCAGTCATTTAAGTGAGGTGATATGGATACCTCCGTTCACTCACTAGGCCTCAACAAAACCCATATGTCGTTCACACATAGACTTAACCTGTTCCTTATGGTTCAAAACTGCACAGGATGCTTTTTAGTTCAACATTTTATAAAGTTGATAGTTATCAACCATTTTATATTGTTGATATTTCCCATTCCAGGGAGCACTTTTGAAAAATGTTGTTACGATGTGTTTTTTAAAGTATAGCAGTGTGGATCCTATCTTCTGTTTATCAGCCGACACAAAGTCATTCCTCATCGCTAGTCTGGCCCCTCATAGTTTACAAAACATTGTCATCGTCCTGAACAGAAGCACAGCTGGGGTATTTTGTTTATAACTGAGGAGAGTTTCCACCAGTGTACACTTTggtacattcttagaaaaaagggttccaaaagggttcttcgtctgtccccataggagaccactttttggttccaggtagaaccctttttggttccaggtaagggttctacatggaactcaaaagggttctacctgaaaccaacaGGGTTCTACCTTGAatcaaaaggggttcttcaaagggttctccaatggggacagccgaagaacccttttaggttttagatagcaccttttatttttggagaaaaataattctccccaattttgtgatatccaattggtagttacaatcttttctcatcgctgcaactccccaacgggctcggaaGAGGTAAAGATCGAGTCAtacgtcctctgaaacatgacccgtcAAGCCATGCTTTTGCTTAACACctgctcacttaacccagaagccagctgcaccaatgtgttggaggaaacacggTTCAACTGACAACTGAAGTCAGCATGCAGGCGCCCgacctgccacaaggagtcgctagagcgaaATGAGCGAAGGaaagccccccggccaaaccctcccctaacccggacgatgctgggctaattgtccgttgccctatgggactcccggtcatggccggctgtgacacagcctggaatcgaactccaggctgtagtgatgcctcagcactgcgatgcagtgccttagaccacagcagcaccttttttttctaagagtgtaccataAGTATAGTGTAGCCATTAGCCAATGatgctcctctgtctctcttgggTAATGATGAACTCAAGTTTAGAGGGTGAGGAGGTTATTCAGTAGTTAACACAGTATTACTGTCCATTCAGGCCCAGGCAACATTTAATATTACATAGACATTATTTAAAGGAATAACAACAGCTGTGTAAGAACAATGATAAATACTGTATCAATCACTATTGATTTTTGTTTTCCAAGGAAATACAGAAAAGTGGGTATAGAAGTACTCCATAACTGCATGTACTTAGTTTAACCAGGAGAGACCTGCTGCAATCATCCCATTAACTGAGGGGAACATGGTTGTGGTTTGGGTCAAAAGTATTTTTTCTTATTTTGATTCGTTTTCCCCCAAATGACACAGTATTGAACTATTTAGTCCAGTTTTTGGTGGTTTCTACAAGTAATGATTATCAAAACGCTTAAACAACTTACGTGAAGATGCATACTGAAGATAGCTGGCCTGTCTTACCgtaggggaggagagcagagattcCTGTCTTTATGAAACTAACGGATCCAAATTGACTTTGGTCCACCTTTTAACTTATAGTTCCTTTTTTCATTTGACTCTTTGAGGTAAATGAGAATATGcactaaatgtatttatttattagctATAACAATGCAGATTGGGACCATTGCTTAAATGACCTGTCTGCTGTAAAATCTTGTGTATTTGATGTCTGTATTACAGTAGGAAGTACTTTGTTTATTAGTAGATGCGCTTTTATTGTCCAAACACAGGGGCTCAATGTTAAAttctgtatttgtatttttttattacgACAATTCTGTGTGCACTTGGCTAGCCGAAGCAGAATATACTGTCCATCATAAGACCGTAGCAAACTTCAGTTTAAAAATCTtgtacattcttttttttttatttgatgttTATTTATGTCAATTTAACTAATAAAATCATTACTTTTATA

Function

NR:

description
tumor necrosis factor ligand superfamily member 11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579453.2 True 3191 mRNA 0.44 4 29706812 29727741

Neighbor

gene id symbol gene type direction distance location
dnajc15 dcj15 coding downstream 86904 29606063 ~ 29619908 (-)
LOC110501708 LOC106582177 coding downstream 265741 29433552 ~ 29441071 (-)
LOC118943585 NA coding downstream 381543 29324145 ~ 29325269 (-)
LOC110501699 NA coding downstream 880104 28819330 ~ 28826708 (-)
trnan-guu-200 NA coding downstream 986680 28720059 ~ 28720298 (-)
LOC110501713 LOC106582171 coding upstream 17628 29745369 ~ 29770850 (-)
LOC110501714 LOC106582170 coding upstream 107757 29835498 ~ 29846456 (-)
pou1f1 pou1f1 coding upstream 145519 29873260 ~ 29876558 (-)
LOC110501718 LOC106582166 coding upstream 212398 29940139 ~ 29995646 (-)
mxra5b LOC106582197 coding upstream 565369 30293110 ~ 30322552 (-)
G1797779 NA non-coding downstream 18013 29688596 ~ 29688799 (-)
G1797778 NA non-coding downstream 18553 29687991 ~ 29688259 (-)
G1797560 NA non-coding downstream 41474 29664893 ~ 29665338 (-)
G1797529 NA non-coding downstream 65973 29640566 ~ 29640839 (-)
G1797467 NA non-coding downstream 114356 29592229 ~ 29592456 (-)
G1797804 NA non-coding upstream 8928 29736669 ~ 29736927 (-)
G1797808 NA non-coding upstream 14119 29741860 ~ 29742105 (-)
G1797781 NA non-coding upstream 15575 29743316 ~ 29744917 (-)
G1797556 NA other downstream 45865 29659467 ~ 29660947 (-)
G1797146 LOC106582182 other downstream 463163 29211664 ~ 29243649 (-)
G1796401 NA other downstream 1079921 28626138 ~ 28626891 (-)
G1796239 NA other downstream 1268041 28434915 ~ 28451815 (-)
G1797936 NA other upstream 243817 29971558 ~ 29978535 (-)
G1798732 LOC106582226 other upstream 343334 30071075 ~ 30071764 (-)
G1798781 NA other upstream 432493 30160234 ~ 30160686 (-)
G1798869 NA other upstream 759248 30486989 ~ 30519672 (-)

Expression


Co-expression Network