LOC110501714 (LOC106582170)


Basic Information

Item Value
gene id LOC110501714
gene name LOC106582170
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29835498 ~ 29846456 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579457.2
ctcttcccctctcgtctcctctcctctgcacaTGCCATTCAAGAACAGCTGTCTATGCTCTACAAAAACTGACACGGACACACCATCTACAGAGTTTGGTCTGAAATCACAGGCCAGGACCATTTACAATCTTTATTCAGGTCTATAGCTGGGAGCCTGGGACAGAAGCACCAGCCATGTGAGAAACACAAGGTTTACTCAGGGTCAGAAAGGAGTGGTGAgacccacagagatcctattcaaTTAAGTTATTCTATGGTGAGACCTGTCGATCTGAGAGCAGTGATCTCTGTGATGTCACCAGCAGGTGGAAGCAGATCACTCATTGACATCTTCCACTGAGTTCCTCACTAGCCAAAGGACCAAAGACAGCTAAGGGACATGTTCCAAACCAAACCCTGGCCCCTTCACACAGGTTCTTATTATAGATCTAagaggagtgggtgtgtggaaacGCAATGTATTCCTGATTCCTATTCAAAATCTTTTGATTTGGATTTGGGAAGAGAATATCCTAGTCAGGTGAatgcagtcagtcagtgtggtTCAGTTCCTTGGTTCCACTGGTTTATTCAGTGAAGTATGAATATAGTTATATAAGTACGTAATAATGTTGACATCCCTCTGTTACAGAATTTATGGGAGTCTTTTATACTGCAGTCTAACCTGCCTCTTTCTTTTTTCTCCCTTTGTTGGGGTCATGTCAGAACCTGCCAAGTTTACTGGAAAACTATGCCAAATGTTCTACTATAGGTTAGTACACTCGATGGACTACACTCGATGGACTACACTCGATGGATAGACTACACTCGATGGATAGACTACACTCGATGGACTACACTCGATGGATAGACTACACTCGATGGATGGACTACACTCAATGGATACCCTACACTCGATGGATAGACTACACTCGATGGATACCCTACACTCGATGGACTACACTCGATGGATAGACTACACTCGATGGATGGACTACACTCGATGGATAGACTACACTCAATGGATAGACTACACTCGATGGATGGACTACACTCAATGGATACCCTACACTCGATGGATAGACTACACTCGATGGATACCCTACACTCGATGGACTACACTCGATGGATAGACTACACTCGATGGATAGACTACACTCGATGGATACCCTACACTCGATGGACTACACTCGATGGATGGACTACACTCGATGGATAGACTACACTCGATGGATACCCTACACTCGATGGACTACACTCGATGGATAGACTACACTCGATGGATGGACTACACTCAATGGATACCCTACACTCGATGGATAGACTACACTCGATGGATGGACTACACTCAATGGATACCCTACACTCGATGGATAGACTACACTCGATGGATACCCTACACTCGATGGACTACACTCGATGGATAGACTACACTCGATGGATACCCTACACTCGATGGACTACACTCGATGGATGGACTACACTCGATGGATAGACTACACTCAATGGATAGACTACACTCGATGGATAGACTACACTCGATGGATAGACTACACTCGATGGATAGACTACACTCGATGGATAGACTACACTCGATGGATAGACTACACTCGATGGATAGACTACACTCGATGGATAGACTACACTCGATGGATAGACTACACTCGATGGATAGACTACACTCACTGGGTTAAAATGACAATCAACATACAATGAAAGATAGTCTATGACACAATGCTGAATATTTACATTCACTTATCTGAAGATACTTACAATTACATTTCACTGAAACTCGAGGCCAAGTCTTGAGGTTTTATGCTTGGTATCTGTAGACCAcgttgtgacaactgctgatgtaaaacggGATTTATAAAAttaaatacatgtgattgattgaATGAATCTTCAAGTGGCAGCTACACTCATCATACCTCATCCTACCTCTCCACTTCGAGCCGCGTGTATGAGTTCCATGGGCGTGTGCACGCAGAgtcctatccctcctctccctctatatacAGTACCGTTAAAACTTTCCTCCAATCAGTGTAGCTCTAATAACCAAGTGGAGTTTGTCCCGTACCTTTTGTTCACTTTCACTCGGGTTTGGTTTGGCACAGTATGAGGTGTTGGTCCTAGTGATTCGGTATTGTCTTTATGCAAACAGTTCCTTTCACCGACAGCATGCCTATTGTCACAGTCATGGTTTATATGGAGGCAGCGGTGGATGTGAGGATTACATCAGTTTGAGGAGCGCTGATCcaggctgtgtttctctctgaGCCCCTGACAGCGCCGTCTCAGCCATGAGTTGTCTGGATGTGATGTTTTACCAGAGTTATGGAGCTCACTATCTCCCTGCGTCTTCAGCAGCAGCGGCAGCAGCCTACAAAGCGGCATACTACCATCATCAACAGCACCAGCAGCAGAAGAAGCTGGGTGTGTACAGCAGGATGCAGCAGGACAGCGAAGAGCAGCACTGTCCAGGGGGGAGACAGCAACAGCAgcgtgggggaggaggggggagactgGCAGGGGAGCATTGGGTCCAACGGGGTCTGGAGGGTTCTGGGCTGAGGGGCTGTGGGGGTACTGGGAAGGACAGCCAGCCTGCTGAGGCAGAGTACCTGAGCTCCAGGTGTGTTCTGTTCACCTATTTCCATGGTGACATTGGGGATGTGGTGGATGAACATTTCTCTAGGGCTCTGAACCAAACCAGTGCCTTCACTGGAGAGATGAAGACGTCTAGGACCACCCCCATGCACACCTCTGCCTCGGTTGGACTGTGGAAAGacAGTGTATCTCTCTCGGAGGCCCAGTGTGgttccctgtcctcctctctgtgGGGTGGAGGTTACCCGTCCCAGACcagcccctgtctctccgtcCACCCAGACTTCTCCCCCAGCCCAGCAGCCTTCCATGCACCAGACAGTGCGCTGTGGACTGGCCACGTTCTGCCCCAGCCCAGCCTCCCTCCTACAGCTTCTCTCCCAGACCCCTGGGCCTACAGCCGCAACCCTCAGACATCCGCCAGCTACACACACGCCCAcaatgtctacacacacacacaccctcacacacacatgtacccCCACCACACCCACCCGGTCATACATCCCCACCCGTCCCATGACCCAGGCCTAGACCCCAGGTTCAGCCCTCTGCTCCTGCCTGGTGTGAAGACTCAGAGCCCCCTAGCCCACAGCCCTGCTGGACATagcacacacagtaacacacacagtaacacacacagcagCCAGAGCCCAGGGATACACAGTGGTGTGAAGATAGAGGTGGAGCAGGCCAGCCCCAACCCCCCCACCCTGACCCCCCCAGCCTGGCCCGCAGCTCTACACACACCCTTGGATACCTACGACTCAGGTCTGGATCAGGACAAAGTCAATACTGTTTGGTTCTGAGAGAGAGGATATGACATCACTGTGACATCACCCTGGCACTGAGCTGTGACCAGCTCTAACAGAACCCCCTGGAACCACAACACATTTCCTGTGTACTCACTCTCAAGTAGAAGACTCTCCGCTCACTAGAAAAAGTCCAGGGTGggtttacagatgtaggatcttaatttgatcattctTTTATTGATAAGAATTTTACTgcaaagcaggaaatgcaaacttgtagagtatttcagttttaaaaaggcttctaaagtttgtaatttccactttgaggTTTTAGACTTAATTTTCCCTAATGAATGAAATGTATAAACCCCTACAAACATGTCAATTTATTATAATCcagataataattcacatttcctgttgctgcaggattattttactgctgtagcaaactttctcaaattaagatcctacatctgtaggtctTTTAGAAAGCACTGGAGAAGCCTAGACCACTCTCCATGCCTCACACCACTCACCAGGGATACTTCTGATCACTTCTTGGCCAAATATTTTTCAAATTTGTACCAAAAGTATTAGCTGGCTGTTTCGGACCTAATATACCACATGATCGTTCTGTTTAAAGAACTTAGTTTGTGGGAACACTGCTCAGCCAAGCctctttctgatattttttttacttcGTGCTATGTGTGTAACTATGTGTGTAATTGACTGTaatatattttgtatatagtaCTTTAATTTGATGTGATTGTCATTTCCTTAAAGTGTTTGATTGTTGCTAATTGTTTTTCACCAaccctgtgttgtcatgttgcctAGTATTCTATATGTGCGGAGAAATCATGTAATTACTGATGTGTAATAAATTGCTAAGTTCTATTGGCAAACATTTCCTCATCTTTAA
>TU2057452
ttgtaatttccactttgaggTTTTAGACTTAATTTTCCCTAATGAATGAAATGTATAAACCCCTACAAACATGTCAATTTATTATAATCcagataataattcacatttcctgttgctgcaggattattttactgctgtagcaaactttctcaaattaagatcctacatctgtaggtctTTTAGAAAGCACTGGAGAAGCCTAGACCACTCTCCATGCCTCACACCACTCACCAGGGATACTTCTGATCACTTCTTGGCCAAATATTTTTCAAATTTGT
>TU2057451
GGGGTACTGGGAAGGACAGCCAGCCTGCTGAGGCAGAGTACCTGAGCTCCAGGTGTGTTCTGTTCACCTATTTCCATGGTGACATTGGGGATGTGGTGGATGAACATTTCTCTAGGGCTCTGAACCAAACCAGTGCCTTCACTGGAGAGATGAAGACGTCTAGGACCACCCCCATGCACACCTCTGCCTCGGTTGGACTGTGGAAAGacAGTGTATCTCTCTCGGAGGCCCAGTGTGgttccctgtcctcctctctgtgGGGTGGAGGTTACCCGTCCCAGACcagcccctgtctctccgtcCACCCAGACTTCTCCCCCAGCCCAGCAGCCTTCCATGCACCAGACAGTGCGCTGTGGACTGGCCACGTTCTGCCCCAGCCCAGCCTCCCTCCTACAGCTTCTCTCCCAGACCCCTGGGCCTACAGCCGCAACCCTCAGACATCCGCCAGCTACACACACGCCCAcaatgtctacacacacacacaccctca

Function

NR:

description
transcription cofactor vestigial-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579457.2 False 4283 mRNA 0.47 4 29835498 29846456
TU2057452 False 278 lncRNA 0.35 1 29835843 29836120
TU2057451 True 493 TUCP 0.59 2 29838277 29843180

Neighbor

gene id symbol gene type direction distance location
LOC110501713 LOC106582171 coding downstream 64648 29745369 ~ 29770850 (-)
tnfsf11 LOC106582173 coding downstream 107757 29706812 ~ 29727741 (-)
dnajc15 dcj15 coding downstream 215590 29606063 ~ 29619908 (-)
LOC110501708 LOC106582177 coding downstream 394427 29433552 ~ 29441071 (-)
LOC118943585 NA coding downstream 510229 29324145 ~ 29325269 (-)
pou1f1 pou1f1 coding upstream 26804 29873260 ~ 29876558 (-)
LOC110501718 LOC106582166 coding upstream 93683 29940139 ~ 29995646 (-)
mxra5b LOC106582197 coding upstream 446654 30293110 ~ 30322552 (-)
LOC110501725 LOC106586504 coding upstream 518149 30364605 ~ 30382857 (-)
mab21l3 mab21l3 coding upstream 552719 30399175 ~ 30402935 (-)
G1797781 NA non-coding downstream 90581 29743316 ~ 29744917 (-)
G1797808 NA non-coding downstream 93393 29741860 ~ 29742105 (-)
G1797804 NA non-coding downstream 98571 29736669 ~ 29736927 (-)
G1797779 NA non-coding downstream 146699 29688596 ~ 29688799 (-)
G1797863 LOC107688654 non-coding upstream 12262 29858718 ~ 29867193 (-)
G1797869 NA non-coding upstream 24245 29870701 ~ 29872087 (-)
G1797935 NA non-coding upstream 123515 29969971 ~ 29977559 (-)
G1797958 NA non-coding upstream 153259 29999715 ~ 29999982 (-)
G1797961 NA non-coding upstream 154814 30001270 ~ 30001578 (-)
G1797556 NA other downstream 174551 29659467 ~ 29660947 (-)
G1797146 LOC106582182 other downstream 591849 29211664 ~ 29243649 (-)
LOC110501699 NA other downstream 1008853 28819330 ~ 28826708 (-)
G1796401 NA other downstream 1208607 28626138 ~ 28626891 (-)
G1796239 NA other downstream 1396727 28434915 ~ 28451815 (-)
G1797936 NA other upstream 125102 29971558 ~ 29978535 (-)
G1798732 LOC106582226 other upstream 224619 30071075 ~ 30071764 (-)
G1798781 NA other upstream 313778 30160234 ~ 30160686 (-)
G1798869 NA other upstream 640533 30486989 ~ 30519672 (-)
LOC110502090 LOC106586488 other upstream 1114631 30960714 ~ 30963603 (-)
LOC110501714 LOC106582170 other upstream 2157 29835498 ~ 29846456 (-)

Expression


Co-expression Network