LOC110501718 (LOC106582166)


Basic Information

Item Value
gene id LOC110501718
gene name LOC106582166
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29940139 ~ 29995646 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579462.2
TGTGCTACAGACACCATAACCATcccacactaaacacaaatggactgacagacagatgGTCAGCCGTTCTGCTGTCATGCTAAAGACTAAGGAACAGAGAGACGCAGACCGAAACCGTTTTTCCCACCTGCTAATGAGTTAGACACAGTAAATGGACCCGCCCACCTACAATAACGCTCAATAGATAAAGCATTAGACGAAGgtaatatggagagagagacgttCTGCCTCAGTGGAGGTAAAGAAGAGAGGGATTAGGGAGAGGCGACGATGAAAGACAGATCACGTAAGACAGAAATCAAAGGGACTACTGAGTGGTGTGGCTggaggGGAAGGTGTGAAGATGTTACAGAAAGGAAGTCAGAAAgagtctctcttcctctgtttgtTATTGgTGTCCTGTCCTCCTTTTCTCAGGTCAGAGTACAGTAGTTGTGGAGAGTTTGAGTTCTACAACCAGACCCTCAGTAGCTGCCAGCCCTGCCCACCATGCCAACCTGGACAGGAGCCCCACATGAACTGTGGCTATGGGATTAAGGATgaggactttgtgtgtgtgtcgtgtccgCCGGGGAAGTACTCGAAGGGAAAGTATGAGATCTGCAGGAGACATAAGGACTGTGAAGGTCTGTACCGTGCTACAGTACTCAAACCTGGGACACCAGACAATGATGCAGACTGTGGACCCTGCTTACCTggGTATTACATCCAGGAGAACCGGCCCAGGAACCTGTATGGGATGGTCTGTCACTCGTGTCAAAATGCACCGCGCAACACTAAAGAGTGCATGCTTACCAAAGTTGTGCTGTCAGGCAAAGCCCCCAGTGTCTCAACCAGCAGTACCACCATGTTCCCTCACCCTCACAAAGACCCCACAGGACAGGGTCACCTAGCAACTGCTCTCATCATCGCCATGTCAACCATCTTCATCATGGCCATCGCCATTGTCCTCATCATCATGTTCTACATCCTCAAAGCCAAGCCCAGCGGACAGgCATGCTGCTCTGGTCAGGTGGTGAAGGCTGTGGAGGCTCAGACCAACAAACAGGAGGATAAGAAAGATGTTCCAGACAATGTTGTAATTTTCTCCGAAAAGGATGAATTTGACAAACTCAAACCTACGCCTCCGAAGACGGTGAAAAGtgaGAATGATGCATCGTCAGAGAACGAGCAGCTGTTGAGTCGTAGTATGGATAGTGATGAGGAGGCAGCATTGGAGAGGCAGGGGGCAGCCGATCCTAACCCCAGCCTCTGTCTCCTGAACCTGGGAACCAAGCCGGACCTCTGCCTGCTTTCCCTGGGGCTCCTCAACAAGGATAAGACTGGATCCAACCCCACCAGCCCTATCAACGCTAACAACATTAGCAATAGCAATGCAAACatcatcaataacaacaacaaggcTACAGGGATTCAGAGCCGGAGGAAAAAGATCCTCGATCTGTATGCTAGAGCCTGCAATGTGGCCGAGGgTCTAAGTCCTACAGAACTACCATTTGACTGTCTGGAGAAGGCCAGTCGGATGCTGAGCTCCTCCTACAGTAGTGAGGCAGCCGTGGTGAAGACCTGGAGACACCTGGCAGAGAGTTTTGGCCTGAAGAGGGATGAGATCGGAGGGATGAGTGACGGCCTGCAGCTGTTTGAGAGGATCAGTACAGCCGGATACAGCATCCCAGACCTGCTAACCAGACTGGTGCAGATAGAGAGACTGGATGCTGTGGAGTCACTATGTTCTGATGTACTGGGAGGAGGAGATACACACACTGTCCCTCTGTCCTCACCACGGTGTGCAAGCGTCTGACTCATATACACACTAATgttcacacacactcatatacacacatgcaACAGACGCATGTGCATATACCCGCACATACATTCAGAAACAAACAGTTTTATCCCTCAACATGAAGAATGTCAGCAGGCCTCTCCAGATCTGAAATCTCTCtcctcctcgtctctctgtcttcctctggcaATGGACTGGCAATTAACCTCGCTCGACAAAAGCTTTTTATAACCTTCTTTAACATTTTTGCTTTTGTTTACATAGATCACATGTAGTACATTTCATAatatcagattttaaaaatggcATAATGGACCTCTGCCAGGACCCCTGTGGCCCCAGACCCTCTATTACCCCGCCTGCCCCCAGCGGTCAGCTGCTGCCACTGGCTCTAATTGGTTATCGTGTGGCGGTCTGGTATAATAGTGTTGTGGTTCACAGTCGAGACTTTCAGCACCTAATTAACCACTAAAACCAATGAACCAGTAAAGACCAGATGCCAGAGACTATTAAAGAGACTGCTAACAGACTAGGCCTACTGCAGCCTGAGGAATGCAGGGAGACAGAACTCCAGGAGACCCAGCACTGAGCAACGCTATGGTCAGCCGGGCTCTGACACTATGCTGGGTGATTCCACAggatggcagccattttgtgccaaAAAGCtcagcacatacagtggggagaacaagtatttgatacactgccgattttgcaggttttcctacttacaaagaatgtcgaggtctgta
>XM_036959070.1
TTGTGCTACAGACACCATAACCATcccacactaaacacaaatggactgacagacagatgGTCAGCCGTTCTGCTGTCATGCTAAAGACTAAGGAACAGAGAGACGCAGACCGAAACCGTTTTTCCCACCTGCTAATGAGTTAGACACAGTAAATGGACCCGCCCACCTACAATAACGCTCAATAGATAAAGCATTAGACGAAGgtaatatggagagagagacgttCTGCCTCAGTGGAGGTAAAGAAGAGAGGGATTAGGGAGAGGCGACGATGAAAGACAGATCACgGGAAGGTGTGAAGATGTTACAGAAAGGAAGTCAGAAAgagtctctcttcctctgtttgtTATTGgTGTCCTGTCCTCCTTTTCTCAGGTCAGAGTACAGTAGTTGTGGAGAGTTTGAGTTCTACAACCAGACCCTCAGTAGCTGCCAGCCCTGCCCACCATGCCAACCTGGACAGGAGCCCCACATGAACTGTGGCTATGGGATTAAGGATgaggactttgtgtgtgtgtcgtgtccgCCGGGGAAGTACTCGAAGGGAAAGTATGAGATCTGCAGGAGACATAAGGACTGTGAAGGTCTGTACCGTGCTACAGTACTCAAACCTGGGACACCAGACAATGATGCAGACTGTGGACCCTGCTTACCTggGTATTACATCCAGGAGAACCGGCCCAGGAACCTGTATGGGATGGTCTGTCACTCGTGTCAAAATGCACCGCGCAACACTAAAGAGTGCATGCTTACCAAAGTTGTGCTGTCAGGCAAAGCCCCCAGTGTCTCAACCAGCAGTACCACCATGTTCCCTCACCCTCACAAAGACCCCACAGGACAGGGTCACCTAGCAACTGCTCTCATCATCGCCATGTCAACCATCTTCATCATGGCCATCGCCATTGTCCTCATCATCATGTTCTACATCCTCAAAGCCAAGCCCAGCGGACAGgCATGCTGCTCTGGTCAGGTGGTGAAGGCTGTGGAGGCTCAGACCAACAAACAGGAGGATAAGAAAGATGTTCCAGACAATGTTGTAATTTTCTCCGAAAAGGATGAATTTGACAAACTCAAACCTACGCCTCCGAAGACGGTGAAAAGtgaGAATGATGCATCGTCAGAGAACGAGCAGCTGTTGAGTCGTAGTATGGATAGTGATGAGGAGGCAGCATTGGAGAGGCAGGGGGCAGCCGATCCTAACCCCAGCCTCTGTCTCCTGAACCTGGGAACCAAGCCGGACCTCTGCCTGCTTTCCCTGGGGCTCCTCAACAAGGATAAGACTGGATCCAACCCCACCAGCCCTATCAACGCTAACAACATTAGCAATAGCAATGCAAACatcatcaataacaacaacaaggcTACAGGGATTCAGAGCCGGAGGAAAAAGATCCTCGATCTGTATGCTAGAGCCTGCAATGTGGCCGAGGgTCTAAGTCCTACAGAACTACCATTTGACTGTCTGGAGAAGGCCAGTCGGATGCTGAGCTCCTCCTACAGTAGTGAGGCAGCCGTGGTGAAGACCTGGAGACACCTGGCAGAGAGTTTTGGCCTGAAGAGGGATGAGATCGGAGGGATGAGTGACGGCCTGCAGCTGTTTGAGAGGATCAGTACAGCCGGATACAGCATCCCAGACCTGCTAACCAGACTGGTGCAGATAGAGAGACTGGATGCTGTGGAGTCACTATGTTCTGATGTACTGGGAGGAGGAGATACACACACTGTCCCTCTGTCCTCACCACGGTGTGCAAGCGTCTGACTCATATACACACTAATgttcacacacactcatatacacacatgcaACAGACGCATGTGCATATACCCGCACATACATTCAGAAACAAACAGTTTTATCCCTCAACATGAAGAATGTCAGCAGGCCTCTCCAGATCTGAAATCTCTCtcctcctcgtctctctgtcttcctctggcaATGGACTGGCAATTAACCTCGCTCGACAAAAGCTTTTTATAACCTTCTTTAACATTTTTGCTTTTGTTTACATAGATCACATGTAGTACATTTCATAatatcagattttaaaaatggcATAATGGACCTCTGCCAGGACCCCTGTGGCCCCAGACCCTCTATTACCCCGCCTGCCCCCAGCGGTCAGCTGCTGCCACTGGCTCTAATTGGTTATCGTGTGGCGGTCTGGTATAATAGTGTTGTGGTTCACAGTCGAGACTTTCAGCACCTAATTAACCACTAAAACCAATGAACCAGTAAAGACCAGATGCCAGAGACTATTAAAGAGACTGCTAACAGACTAGGCCTACTGCAGCCTGAGGAATGCAGGGAGACAGAACTCCAGGAGACCCAGCACTGAGCAACGCTATGGTCAGCCGGGCTCTGACACTATGCTGGGTGATTCCACAggatggcagccattttgtgccaaAAAGCtcagcacatacagtggggagaacaagtatttgatacactgccgattttgcaggttttcctacttacaaagaatgtcgaggtctgta
>XM_021579461.2
gaaaatgtatattttcctGTGAGGAGGAGCTACTGTGGATCGCCGGCCATGCACACGGTGGGCTGAAAACAGCCAGATTAACGAAGGATTTGTTTACAGCTGTTTAGATATTGGTGATGCCTGTCAGACGGCTCAATAGAGTCTGATCATTAAGCTACAGCAGTCCGCTCAGAGATATAGGCTACTCGCCGCCAGACCTGTCCCGTCTCAACTCCACTCTACACGCAGgGGAAGGTGTGAAGATGTTACAGAAAGGAAGTCAGAAAgagtctctcttcctctgtttgtTATTGgTGTCCTGTCCTCCTTTTCTCAGGTCAGAGTACAGTAGTTGTGGAGAGTTTGAGTTCTACAACCAGACCCTCAGTAGCTGCCAGCCCTGCCCACCATGCCAACCTGGACAGGAGCCCCACATGAACTGTGGCTATGGGATTAAGGATgaggactttgtgtgtgtgtcgtgtccgCCGGGGAAGTACTCGAAGGGAAAGTATGAGATCTGCAGGAGACATAAGGACTGTGAAGGTCTGTACCGTGCTACAGTACTCAAACCTGGGACACCAGACAATGATGCAGACTGTGGACCCTGCTTACCTggGTATTACATCCAGGAGAACCGGCCCAGGAACCTGTATGGGATGGTCTGTCACTCGTGTCAAAATGCACCGCGCAACACTAAAGAGTGCATGCTTACCAAAGTTGTGCTGTCAGGCAAAGCCCCCAGTGTCTCAACCAGCAGTACCACCATGTTCCCTCACCCTCACAAAGACCCCACAGGACAGGGTCACCTAGCAACTGCTCTCATCATCGCCATGTCAACCATCTTCATCATGGCCATCGCCATTGTCCTCATCATCATGTTCTACATCCTCAAAGCCAAGCCCAGCGGACAGgCATGCTGCTCTGGTCAGGTGGTGAAGGCTGTGGAGGCTCAGACCAACAAACAGGAGGATAAGAAAGATGTTCCAGACAATGTTGTAATTTTCTCCGAAAAGGATGAATTTGACAAACTCAAACCTACGCCTCCGAAGACGGTGAAAAGtgaGAATGATGCATCGTCAGAGAACGAGCAGCTGTTGAGTCGTAGTATGGATAGTGATGAGGAGGCAGCATTGGAGAGGCAGGGGGCAGCCGATCCTAACCCCAGCCTCTGTCTCCTGAACCTGGGAACCAAGCCGGACCTCTGCCTGCTTTCCCTGGGGCTCCTCAACAAGGATAAGACTGGATCCAACCCCACCAGCCCTATCAACGCTAACAACATTAGCAATAGCAATGCAAACatcatcaataacaacaacaaggcTACAGGGATTCAGAGCCGGAGGAAAAAGATCCTCGATCTGTATGCTAGAGCCTGCAATGTGGCCGAGGgTCTAAGTCCTACAGAACTACCATTTGACTGTCTGGAGAAGGCCAGTCGGATGCTGAGCTCCTCCTACAGTAGTGAGGCAGCCGTGGTGAAGACCTGGAGACACCTGGCAGAGAGTTTTGGCCTGAAGAGGGATGAGATCGGAGGGATGAGTGACGGCCTGCAGCTGTTTGAGAGGATCAGTACAGCCGGATACAGCATCCCAGACCTGCTAACCAGACTGGTGCAGATAGAGAGACTGGATGCTGTGGAGTCACTATGTTCTGATGTACTGGGAGGAGGAGATACACACACTGTCCCTCTGTCCTCACCACGGTGTGCAAGCGTCTGACTCATATACACACTAATgttcacacacactcatatacacacatgcaACAGACGCATGTGCATATACCCGCACATACATTCAGAAACAAACAGTTTTATCCCTCAACATGAAGAATGTCAGCAGGCCTCTCCAGATCTGAAATCTCTCtcctcctcgtctctctgtcttcctctggcaATGGACTGGCAATTAACCTCGCTCGACAAAAGCTTTTTATAACCTTCTTTAACATTTTTGCTTTTGTTTACATAGATCACATGTAGTACATTTCATAatatcagattttaaaaatggcATAATGGACCTCTGCCAGGACCCCTGTGGCCCCAGACCCTCTATTACCCCGCCTGCCCCCAGCGGTCAGCTGCTGCCACTGGCTCTAATTGGTTATCGTGTGGCGGTCTGGTATAATAGTGTTGTGGTTCACAGTCGAGACTTTCAGCACCTAATTAACCACTAAAACCAATGAACCAGTAAAGACCAGATGCCAGAGACTATTAAAGAGACTGCTAACAGACTAGGCCTACTGCAGCCTGAGGAATGCAGGGAGACAGAACTCCAGGAGACCCAGCACTGAGCAACGCTATGGTCAGCCGGGCTCTGACACTATGCTGGGTGATTCCACAggatggcagccattttgtgccaaAAAGCtcagcacatacagtggggagaacaagtatttgatacactgccgattttgcaggttttcctacttacaaagaatgtcgaggtctgta

Function

NR:

description
PREDICTED: tumor necrosis factor receptor superfamily member EDAR-like isoform X1

GO:

id name namespace
GO:0060348 bone development biological_process

KEGG:

id description
K05162 EDAR; tumor necrosis factor receptor superfamily member EDAR

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579462.2 False 2541 mRNA 0.49 11 29940139 29993639
XM_036959070.1 False 2499 mRNA 0.49 11 29940139 29993640
XM_021579461.2 True 2440 mRNA 0.50 11 29940139 29995646

Neighbor

gene id symbol gene type direction distance location
pou1f1 pou1f1 coding downstream 63581 29873260 ~ 29876558 (-)
LOC110501714 LOC106582170 coding downstream 93683 29835498 ~ 29846456 (-)
LOC110501713 LOC106582171 coding downstream 169289 29745369 ~ 29770850 (-)
tnfsf11 LOC106582173 coding downstream 212398 29706812 ~ 29727741 (-)
dnajc15 dcj15 coding downstream 320231 29606063 ~ 29619908 (-)
mxra5b LOC106582197 coding upstream 297464 30293110 ~ 30322552 (-)
LOC110501725 LOC106586504 coding upstream 368959 30364605 ~ 30382857 (-)
mab21l3 mab21l3 coding upstream 403529 30399175 ~ 30402935 (-)
si:dkey-67c22.2 LOC106582233 coding upstream 407556 30403202 ~ 30414069 (-)
LOC110502089 LOC106582237 coding upstream 461188 30456834 ~ 30459539 (-)
G1797869 NA non-coding downstream 68052 29870701 ~ 29872087 (-)
G1797863 LOC107688654 non-coding downstream 72946 29858718 ~ 29867193 (-)
G1797781 NA non-coding downstream 195222 29743316 ~ 29744917 (-)
G1797958 NA non-coding upstream 4069 29999715 ~ 29999982 (-)
G1797961 NA non-coding upstream 5624 30001270 ~ 30001578 (-)
G1797962 NA non-coding upstream 7367 30003013 ~ 30003216 (-)
G1798731 NA non-coding upstream 71783 30067429 ~ 30067655 (-)
G1798769 NA non-coding upstream 138092 30133738 ~ 30137205 (-)
G1797556 NA other downstream 279192 29659467 ~ 29660947 (-)
G1797146 LOC106582182 other downstream 696490 29211664 ~ 29243649 (-)
LOC110501699 NA other downstream 1113494 28819330 ~ 28826708 (-)
G1796401 NA other downstream 1313248 28626138 ~ 28626891 (-)
G1798732 LOC106582226 other upstream 75429 30071075 ~ 30071764 (-)
G1798781 NA other upstream 164588 30160234 ~ 30160686 (-)
G1798869 NA other upstream 491343 30486989 ~ 30519672 (-)
LOC110502090 LOC106586488 other upstream 965441 30960714 ~ 30963603 (-)
G1799132 LOC106582249 other upstream 981248 30976894 ~ 30995302 (-)

Expression


Co-expression Network